BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28390.2
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921894 jgi|Araly1|921894|scaffold_103175.1 1917 0.0
Ahg473053 jgi|Araly1|473053|fgenesh2_kg.1__3007__AT1G28380.1 169 8e-41
> Ahg921894 jgi|Araly1|921894|scaffold_103175.1
Length=1441
Score = 1917 bits (1038), Expect = 0.0
Identities = 1276/1386 (92%), Gaps = 35/1386 (3%)
Strand=Plus/Plus
Query 54 tctctctctctaaatctctcccatgggttatctctctTGCAACGGCGAATCCGCCGTCGC 113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTCTCTCTCTAAATCTCTCCAATGGGTTATCTCTCTTGCAACGGCGAATCCGCCGTTGC 60
Query 114 AATCTGCGATACTTATAACTGGAATCCTCGTCGACGATCTAAAGTACCGGAGAAACGTCA 173
|||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 61 AATCTGCGATCCTTATAACTGGAATCCTCGTCGAAAATC-AAA--ACCGGAGAAACGTCG 117
Query 174 TCCTCCTAAGCTTCGGGTTTTCAACTACGACGAACTCGCCGTCGCTACTAACGGCTTCTC 233
|||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 118 TCCTCCTAAGCTTCGGATTTTCAACTACGACGAACTCGCCGACGCTACAAACGGCTTCTC 177
Query 234 CGCC-AATAACTTCCTCGGAAAAGGAAGTCACGGCAGAGTTTACAAAGCAGTTCTCGACG 292
|||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 CGCCGGA-AACTTCCTCGGGAAAGGAAGTCACGGCAGAGTTTACAAAGCGGTTCTCGACG 236
Query 293 ACGGAAAGCTTCTCGCCGCCGTCAAGAGAACAACAATCACCACTACCGTTGGTAATAACA 352
|||| |||||||||||||||||||||||||||||||||| | | |||| ||||||| | |
Sbjct 237 ACGGGAAGCTTCTCGCCGCCGTCAAGAGAACAACAATCA-C-C-ACCGCTGGTAATTATA 293
Query 353 ATAACAACGTGAGTCAGGTAGACAATGAGATCGAGATTCTTTCACGGGTTCGTCACCGTT 412
|||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||
Sbjct 294 ATAACAACGTGAGTCAAGTAGACAACGAGATCGAGATTCTTTCAAGAGTTCGTCACCGTT 353
Query 413 GGATGGTCAACTTAATCGGTTACTGCGTTGACCACCGGAGGAAAACAAAGCTGTTAGTCG 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 354 GGATGGTCAACTTAATCGGTTACTGCGTTGACCACCGGAGAAAAACAAAGCTGTTAGTCG 413
Query 473 TCGAGTACATGCCTAACGGTACGCTTCACGATCAGTTACATTCTCGTAGTTCGTTAGATT 532
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 414 TCGACTACATGCCTAACGGTACACTTCACGATCAGTTACATTCTCGTAGTTCGTT--A-- 469
Query 533 CACGGTTAAGTAGTTGGAATCGGAGAATTAAACACGCGCTTCAGATCGCGATTGCTGTCC 592
| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 470 C-CGG-T---TAGTTGGAATCGGAGAATCAAACACGCGCTTCAGATCGCGATTGCTGTCC 524
Query 593 ACGCTCTTCACACCGCAGAGACTCAAGTGATCCACCGTGACATTAAATCGTGTAACGTTT 652
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 525 ACGCTCTTCACACCGCGGAGACTCCGGTGATCCACCGTGACATTAAATCGTGTAACATTC 584
Query 653 TAATAGACGGTGACGGTAACGCTAGGTTAGCTGATTTCGGATTAGCATTGATCGGAAACG 712
| || |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 585 TCATCGACGGTGACGGTAACGCTAGATTAGCAGATTTCGGATTAGCGCTGATCGGAAACG 644
Query 713 TTGACGATGAGCGTTTGAAATATACTCCGCCGGCGGGTACGTTGGGATATTTAGATCCGT 772
||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 645 TTGACGATGAGCGTTTGAAATGTACTCCGCCGGCGGGAACGTTGGGGTACTTAGATCCGT 704
Query 773 CGTACTTAGCACCGGCGGACTTGACGGCTAAGAGCGATGTTTTCAGCTTTGGGATATTGT 832
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CGTATTTAGCACCGGCGGATTTGACGGCTAAGAGCGATGTTTTCAGCTTTGGGATATTGT 764
Query 833 TGTTGGAGATTATTAGTGGTAGAGAAGCCATTGATTTGAATTATAGTCCGTCGTGTATCG 892
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 765 TGCTGGAGATTATTAGTGGTAGAGAAGCCATTGATTTGAATTATAGTCCGTCGTGTATTG 824
Query 893 TTGATTGGGCGGTGCCGCTT-ATCAAACGCGGCG-ATTACGACGCGATTTGTGATTTGAA 950
| ||||||||||||||| || ||||||||||||| ||| || ||||||||||||||||||
Sbjct 825 TAGATTGGGCGGTGCCG-TTAATCAAACGCGGCGAATT-CGCCGCGATTTGTGATTTGAA 882
Query 951 GATTAAGAACCGTCCTTATTACGCCGTGATTCGGAAGTTGGCCG-TTATGGCGGCTAGGT 1009
|||||||||||||||||||| ||||||||||||||| ||| | | |||||||| ||||
Sbjct 883 GATTAAGAACCGTCCTTATTCCGCCGTGATTCGGAAACTGG-TGATGATGGCGGCGAGGT 941
Query 1010 GTGTTAGATCGACGGCGAAGAAACGTCCAGATATGTTAGAGGTTGTTGAGTGTTTGAAAA 1069
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GTGTGAGATCGACGGCGAAGAAACGTCCAGATATGTTAGAGGTTGTTGAGTGTTTGAAAA 1001
Query 1070 CGGTGAGGCAGTTATCTC---C------GGCGTGGAATAAACTGCGGCGGAGGAGTGAAG 1120
|||||||| ||||||||| | ||||||||||| |||| |||||||||||||||
Sbjct 1002 CGGTGAGGGAGTTATCTCAGGCATCTCCGGCGTGGAATAGACTGAGGCGGAGGAGTGAAG 1061
Query 1121 AGAGATCGGAAAATGTTTTGGCGGTTGAGGAAGAGAAGGAAGAGATTCATGTGAGGATTG 1180
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1062 AGAGATCGGAAAATGTTTTCGCGGTTGAGGAAGAAAAGGAAGAGATTCATGTGAGGATTG 1121
Query 1181 TGAGAGGAGGAAGCAGGAAGAATCGGAAGGTATCGAACGTGACGACGAGTGTGGATGATG 1240
|||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||
Sbjct 1122 TGAGAGGAGGAAGCAGGAAGAACCGGAAGGTAACGAACGTGACGT-G--TGTGGATGATG 1178
Query 1241 TTTACGAGAGATTAGTTCCGGAGGAAACGCTGCCGTTTCGTCGTCGGAATTTTGTGCTGA 1300
| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1179 TATACGAGAGAATAGTTCCGGAGGAGACGCCGCCGTTTCGTCGTCGGAATTTTGTGCTGA 1238
Query 1301 GATCGAGATCAGTAGGAGCGAAAGTTGGACCGGATCCATACGACGGGTTTGGTGATGAGA 1360
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 1239 GATCGAGATCAGTGGGAGCGAAAGTTGGACCGGATCCAAACGACGGCTTTGGTGATCAGG 1298
Query 1361 CGGTGGTTACAATGAGATTACTTATTGAGAAAGAAAGACCGGTGACGACGGCAGCGATGA 1420
|||||||||||||||| || |||| |||||||||||||||||||||||||| |||||||
Sbjct 1299 TGGTGGTTACAATGAGAATATTTATCGAGAAAGAAAGACCGGTGACGACGGCGGCGATGA 1358
Query 1421 GGCTGA 1426
| ||||
Sbjct 1359 GACTGA 1364
> Ahg473053 jgi|Araly1|473053|fgenesh2_kg.1__3007__AT1G28380.1
Length=2205
Score = 169 bits (91), Expect = 8e-41
Identities = 123/137 (90%), Gaps = 8/137 (6%)
Strand=Plus/Minus
Query 1546 AAGGAGAACAAAAATGAAACTGGTTCAATTTCATCCAAATATGTTCTACACGAATACATA 1605
|||||||||||||| ||| | |||||| |||||| |||||||||||||||||||||| |
Sbjct 2205 AAGGAGAACAAAAACGAAGCCGGTTCAGTTTCATTCAAATATGTTCTACACGAATAC--A 2148
Query 1606 TATACTA-TATGTAAAATTCAACAATATCATATACAACGAAACATTTACATCAACAGATA 1664
||||||| ||||||||| | | || ||||||||||||||||||||||||||||||||||
Sbjct 2147 TATACTATTATGTAAAA-T--A-AACATCATATACAACGAAACATTTACATCAACAGATA 2092
Query 1665 AATAAATTT-GTTCACA 1680
||||||||| |||||||
Sbjct 2091 AATAAATTTTGTTCACA 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5