BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28395.2
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313543 jgi|Araly1|313543|fgenesh1_pm.C_scaffold_1002323 444 4e-124
> Ahg313543 jgi|Araly1|313543|fgenesh1_pm.C_scaffold_1002323
Length=288
Score = 444 bits (240), Expect = 4e-124
Identities = 272/288 (94%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 26 ATGTCCGCCGCAAGGTCCGTGTTCCGCTCCGCCGCAAGCCGAGCATCGTCCACCGCATTT 85
|||||||||||||||||||| ||||||||||||||||||||||||||| || |||| | |
Sbjct 1 ATGTCCGCCGCAAGGTCCGTCTTCCGCTCCGCCGCAAGCCGAGCATCGGCCGCCGCGTCT 60
Query 86 AGATTCTCCGCCGGACCCAAGCCTATGCCGTCATCGGCACGGACCGCGTTTCGGATGCCT 145
||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 61 AGATTCTCCACCGGACCCAAGCCTATGCCTTCATCTGCACGGTCCGCGTTTCGGATGCCT 120
Query 146 AAACAGAGTCCTCTAACAAATCGCATTTTCAGATCTCCGGTAGAACTAAGCTGTTGCGTG 205
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACAGAGCCCTCTTTCAAATCGCATTTTCAGATCTCCGGTAGAACTAAGCTGTTGCGTG 180
Query 206 GAGACGATGCTCCCTTACCACACTGCCACTGCTTCCGCTTTGCTCAATTCAATGCTCTCA 265
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GAGACGATGCTCCCGTACCATACTGCCACTGCTTCCGCTTTGCTCAATTCGATGCTCTCT 240
Query 266 GTTTCACGCCGTGGTTGGATCGTTGATGGGCTAGACGAGACTAGATGA 313
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTCACGCCGTGGTTGGATCGTTGATGGGCTAGACGAGACTAGATGA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5