BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28400.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473059 jgi|Araly1|473059|fgenesh2_kg.1__3013__AT1G28400.1 1893 0.0
> Ahg473059 jgi|Araly1|473059|fgenesh2_kg.1__3013__AT1G28400.1
Length=1356
Score = 1893 bits (1025), Expect = 0.0
Identities = 1284/1399 (92%), Gaps = 58/1399 (4%)
Strand=Plus/Plus
Query 4 ATATCTAATTGtctcttctcttctctctATCACACTACTACTACTCACATCATGGCTTTC 63
||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| ||
Sbjct 1 ATATCTAATTGTCCCTTCTCTTCTCTCTATCACACTA-TACTTCACACATCATGGCTCTC 59
Query 64 TCCACTAGAGGCTCCCTCTTATTCTTCTTCACTACACTTGTTCTTCTCTCCACCCAAATC 123
|||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TCCATTAGAACCTCCCTCTTCTTCTTCTTCACTACACTTGTTCTTCTCTCCACTCAAATC 119
Query 124 CATGCAAGAGACAGTTACTTCTTTGGAAAATTCCACAGAGAATCCCCCAAAGATCAAAAC 183
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CATGCAAGAGACAGCTACTTCTTTGGAAAATTCCATAGAGAATCCCCCAAAGATCAAAAT 179
Query 184 CCTAACAGTTTCATCCCTCTTGAGACTAGCGAGAAAACCACAGTAGAAGAATCCGTCCTC 243
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CCTAACAGTTTCATCCCTCTCGAGACTAGCGAGAAAACCACAGTAGAAGAATCCGTCCCC 239
Query 244 AACAAGAAAGAGCAAGAACAAGATCCTACCTTTGTCCCCGAGTCCGGAAACGGGTATGGC 303
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 240 AACAAGAAAGAGCAAGAACAAGATCCTACCTTTGTCCCCGAGTCTGAAAACGGCTATGGC 299
Query 304 TTGTATGGTCACGAGACCACATacaacaacaacaacgacaacaaagaagagttcaacaac 363
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 300 TTGTATGGTCACGAGACCACCTACAACAACAACAACAACAACAAAGAAGAGTTCAACAAC 359
Query 364 aacaacaagaacgatgaaaaagtcaacagcaagaCTTTCTCCACTCCAAGCCTGAGCGAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AACAACAAGAACGATGAAAAAGTCAACAGCAAGACTTTCTCCACTCCAAGCCTGAGCGAG 419
Query 424 ACCGAAGAGTCTTTCAACAACTACGAGGAAAATTACCCGAAGA-AGACAGAGAACTACGG 482
||||| |||||||||||||||||||| ||||| |||||||| | || |||||| ||||||
Sbjct 420 ACCGAGGAGTCTTTCAACAACTACGACGAAAAGTACCCGAATACAG-CAGAGAGCTACGG 478
Query 483 CACTAAAGGTTATAACAATGAGGAGTTcaa---caacaacaacaacaagtacgatgcaaa 539
|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 479 CACTAACGGTTACAACAATGAAGAGTTCAATAACAACAACAACAACAAGTACGATGCAAA 538
Query 540 cttcaaggaagagttcaacaacaacaagTACGATGAAAATTACGCCAAGGAAGAGTTcaa 599
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 539 CTTCAAGGAAGAGTTCAACAACAACAAGTACGATGAGAACTACGCCAAGGAAGAGTTCAA 598
Query 600 caacaacaacaacaacaacaactacaactacaaGTACGATGAAAACGTT-AAGGAAGAGT 658
||||||||||||| ||||| |||||||| |||| || ||||||||||
Sbjct 599 CAACAACAACAAC---------TACAA------GTACGATGCAAAC-TTCAAGGAAGAGT 642
Query 659 CTTTCCCCGAGAACAATGAAGACAACAAGAAAAACGTCTACAACTCTAACGCTTACGGGA 718
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 643 CTTTCCCCGAGAACAATGAAGACAGCAAGAGAAACGTTTACAACTCTAACGCTTACGGGA 702
Query 719 CAGAGTTAGAACGTGAAACACCGTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCA 778
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAGAGCTAGAACGTGAAACACCGTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCA 762
Query 779 TGAGTGACACAAGGTTCATGGAGAAAGGTAGCTACTACTACGACCTTTACAACGACAGAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TGAGTGACACAAGGTTCATGGAGAAAGGTAGCTACTACTACGACCTTTACAACGACAGAA 822
Query 839 ACCACGGCCATTACTACCGGAAGTCACACAGTAAAAGCCCCGCCGGTTACTATTCTTCTC 898
||||||||||||||||||| ||| | |||| ||||||||||| ||||| ||||| || |
Sbjct 823 ACCACGGCCATTACTACCGAAAGCCTCACACCAAAAGCCCCGCAGGTTATTATTCATCCC 882
Query 899 CCGCGACCGAGACTAACTACGAACAGCAATCGTACTCGTACGGAAACAACAACGAGGAGA 958
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 883 CCGCAACCGAGACTAACTACGAGCAGCAATCGTATTCGTACGGAAACAACAACGAGGAGA 942
Query 959 ACAGTTTTAAGGATCCGTACAACTCCAAGTGGGAGAAGAACTTGATGAACGAACAGCCTG 1018
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 943 ACAGTTTTAAGGATCCGTACAACTCCAAGTGGGAGAAGAACATGATGAATGAACAGCCTG 1002
Query 1019 AAGAGTTTGTTGAGGAGCAAGGCACTAATCAGTTCAAGCCTTGATGAAGATTGTTATTTG 1078
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1003 AAGAGTTTGTTGAGGAGCAAGGCACTAATAAGTTCAACCCTTGATGAAGATTGTTATTTG 1062
Query 1079 ATTTCCTCTCAAGACTACTACACTCTTAAAAGTACTTTCTTT-T--ATTTCAAACTAAGT 1135
|||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||
Sbjct 1063 ATTTCCTCTCAAGACTACTACACTCTTAAAAGCACTTTCTTTCTTTATTTCAA-CTAAGT 1121
Query 1136 TATATTACTTATCGTTGTTTAGTCAAACTAAATCGTTGTTATCATTGCaa-aacttaaaa 1194
|||||||||||| | |||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1122 TATATTACTTAT--T-GTTTAGTCAAACTATATCGTTGTTATCATTGCAACAAATTAAAA 1178
Query 1195 gtgaaaacaaaaacaaaaaaGAGAAAGGAGtttttttttttttttAGTTAATCGGTGGGT 1254
|||||||||||||||||||| |||||| |||| | |||||||
Sbjct 1179 GTGAAAACAAAAACAAAAAA----------TTTTTT---------AGTTGA--GGTGGGT 1217
Query 1255 TTGCTTTTCTATGGGTTTTTGAACTTTGATGTTTGCGTTTGCATATATTATTCGGTGAAA 1314
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1218 TTGCTTTTTTATGGGTTTTTGAACTTTGATGTTTGCATTTGCATATATTATTCGGTGAAA 1277
Query 1315 -GAAAGATAGTTTATATATATGGTGCTACTTTATGTTATTATTCTCTTA--T---GTTAA 1368
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1278 AGAAAGATAGTTTATATATATGGTGCTACTTTATGTTATTATTCTCTTAGCTTATGTTAA 1337
Query 1369 TTTAATCACTTTTTGGTTA 1387
||||||||||||||||||
Sbjct 1338 ATTAATCACTTTTTGGTTA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5