BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28410.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473060 jgi|Araly1|473060|fgenesh2_kg.1__3014__AT1G28410.1 2019 0.0
> Ahg473060 jgi|Araly1|473060|fgenesh2_kg.1__3014__AT1G28410.1
Length=1405
Score = 2019 bits (1093), Expect = 0.0
Identities = 1296/1390 (93%), Gaps = 29/1390 (2%)
Strand=Plus/Plus
Query 62 CAGAG-GAATCGAAAGAACCTTTACGAGGAAGCTTTGACTCGAAATCTCTCTGAAGAAGA 120
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 29 CAGAGAAAATCGAAAGAACCTTTACGAGGAAGCTTTGACTCGAAATCTCGCTGAAGAAGA 88
Query 121 AGAGGAGAGACGAAACTGTTGGC-TTAGTTTCCGACGCCGGGAACGTCGGAACTCCGGTG 179
||||||||||||||| ||||| | |||||| ||| ||||||| ||||| |||||||||||
Sbjct 89 AGAGGAGAGACGAAATTGTTGTCTTTAGTTGCCGGCGCCGGGGACGTCTGAACTCCGGTG 148
Query 180 AACAGAGAATGGGGCTGCATTTGGCTGCTCTGTTTTTCATCATTTCACCACTCT-TCGTT 238
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 149 AACAGAGAATGGGGATGCATTTGGCTGCTCTGTTTTTCATTATTTCACCACTCTGT-GTT 207
Query 239 TTCTCCTCTCAAGTCCAGCAGCAGATCGGTTCTAATCAGAACTTGATCAATGATCTGGAC 298
||||||||| |||| | |||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 208 TTCTCCTCTGAAGT-C--CAGCAGATCGGTTCTACTCAAAACTTGGTCAATGATCTGGAC 264
Query 299 TCAGCTAAGCTCAGAATATCTCAATTGGAAGCTGTTCTTGAGGCGACAATACAGAAGTTG 358
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 265 GCAGCTAAGCTCAGAATATCTCAATTGGAAGCTGTTCTTGAGGCGACCATACAGAAGCTG 324
Query 359 GATGGTAAGACCCTTTACTTGAAAGAGCGTGAGAAGTTGATCCAAGTTGCTGAAACTCAG 418
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 325 GATGCTAAGACCCTTTACTTGAAAGATCGTGAGAAGTTGATCCAAGTTGCTGAAAGTCAG 384
Query 419 ATCCTTGATTTGCAGTCTGCTTCATACATTGACAAGAGCGGCTTACCTTTGGTTCAAAAG 478
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATCCATGATTTGCAGGCTTCTTCATACATTGACAAGAGCGGCTTACCTTTGGTTCAAAAG 444
Query 479 AGGATAAGCGAGTTAGAAGAAGAGGTGAAACTTCTATGGGCTGCCTTGAGAACAACCAAC 538
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 445 AGGATAAGCGAGTTGGAAGAAGAGGTTAAACTCCTATGGGCTGCCTTGAGAACAACCAAC 504
Query 539 TTCGAGCTACACGTTTTAGAGGATAAAGCAAGAGAAGCTAAGAATAAACTTAAAGCTAAG 598
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 505 TTCGAGCTTCACGTTTTAGAGGATAAAGCAAGAGAAGCTAAGGATAAACTTAAAGCTAAG 564
Query 599 GCTTTGGAAGTTGAACAGATGACAGAAGTTGTTACGGAGCAGTGGATTCAGGTTCAACAT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 565 GCTTTGGAAGTTGAACAGATGACAGAAGTTGTTACGGAGCAGTGGATTCAGGTTCAGCAT 624
Query 659 CTTGAGCAGATGAGAGAATTCAATAACCGAAGGCATCACACACCTAGCAGATGCCCGTTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CTTGAGCAGATGAGAGAATTCAATAACCGAAGGCATCACACACCTAGCAGATGCCCGTTC 684
Query 719 GTGAAGCTCATGAGCGATATCCAAAGAAAACATCTGCCCAAAGTTGATGAAGCATTTGAC 778
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTGAAGCTCATGAGCGACATCCAAAGAAAACATCTGCCCAAAGTTGATGAAGCATTTGAC 744
Query 779 ATTCACTGGAAGGGAAAGAAGGTTCTCTCTGTGCAACCGTATCTCACAAAAGCCCTGTCA 838
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 745 ATTCACTGGAAAGGAAAGAAGGTTCTCTCTGTGCAACCGTATCTCACACAAGCTCTGTCA 804
Query 839 CAGTTAAAAAGCCTCTGGGCAGCTGTTACCAAATATCACCACCAGTTGCAAGGCTTCATC 898
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 805 CGGTTAAAAAGCCTCTGGGCAGCTATTACCAAATATCACCACCAGTTGCAAGGCTTCATC 864
Query 899 GAGCATGAGATGGAAAGAACCGAGATCACAGCGGCTCTCGCAAACAGAGAAGTGGTGTTT 958
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 865 GAACATGAGATGGAAAGAACCGAGATCACAGCGGCTCTTGCAAACAGAGAAGTGGTGTTT 924
Query 959 TTCATGGCATCTGCACTAATTACCTTCCCAGTGTTTGGAGCATGGATGTTACTCTCTTCC 1018
||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 925 TTCATGGCATCTGCATTGATTACCTTCCCAGTGTTTGGAGCTTGGATCTTACTCTCTTCC 984
Query 1019 TAGTTTGGTTTCTGGATGACATGTTCAACCGATGCATCAGCAATGTTCAGATTGGTTTTG 1078
||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||
Sbjct 985 TAGTTTGGTTTCTGGATGACATGATCAACCGATGCATCAGCAGTGTTCATATTGGTTTTG 1044
Query 1079 CTTCTCATTGCTCAAGAAATTGTCTAGTTTTAAGCTTTGAGATCCGTAGGATAATCCTAG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1045 CTTCTCATTGCTCAAGAAATTGTCTAGTTTTAAGCTTTGAGATCCGTAGGAGGATCCTAG 1104
Query 1139 TAGGATCAATTACATCCGTGAACAAACC-AAAATCCGGTTACTCTGTGGTTTAAAGTTTA 1197
||||||| ||| |||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 1105 TAGGATCTATTGCATCCGTGAACAAACCGAAAACCCGGTTAATCTGTGGTTTAAA----- 1159
Query 1198 AACCAGTTATTATGGGGCAAGGTGCACAGTTGTATCCAAGTTCAATTGTTGGAAATTGAA 1257
|||||| ||||| || |||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1160 --CCAGTTGTTATGAGGTAAGGCGCACAGTTGTACCCAAGTTCAATTGTTGGAGACTGAA 1217
Query 1258 TTT-GTTATTGAAAAAAGAGACAAAACCAAAGACATGCAGACAAAAGTCAAGTCC-TTGT 1315
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1218 TTTTGTTATTGAAAAAAGAGACAAAACCAAAGAGATGCAGACAAA-GTCAAGTCCCTTGT 1276
Query 1316 TCGTTGTTTTACCGTTAGATG-T-TT-GTCGTAAGTA----G--G-AGTAGCCTTTGTAT 1365
|||||| ||||| |||||||| | || |||||||||| | | |||||||||| ||
Sbjct 1277 TCGTTGCTTTAC-GTTAGATGATGTTTGTCGTAAGTACTAAGTAGGAGTAGCCTTTTTAG 1335
Query 1366 GGTTTAACGTGAGATGATTTTACTACATGTAGTGTAGTGAAAGTTTATATATACAAGACC 1425
|||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1336 GGTTTAACGTGATATGATTTTACTACATGTACTGTAGTGAAAGTTTTTATATACAAGACC 1395
Query 1426 ACATTATTGG 1435
||||||||||
Sbjct 1396 ACATTATTGG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5