BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28430.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1 2348 0.0
Ahg930044 jgi|Araly1|930044|scaffold_302501.1 263 3e-69
Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1 165 9e-40
> Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1
Length=1562
Score = 2348 bits (1271), Expect = 0.0
Identities = 1469/1566 (94%), Gaps = 8/1566 (1%)
Strand=Plus/Plus
Query 4 ACAGTAATGGTCAGCTTTGATCTTCTAAATTGTTTCATCTTTACCCTCATATTCCTCATC 63
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ACAGTAATGGTTAGCTTTGATCTTCTAAATTGTTTCATCTTTACTCTCATATTCCTCATC 60
Query 64 TCAACTCTCTTTCTCTTTGTTTTATTCTATAAGAAACCAAACGATGGATTTGATGTACCT 123
|||||||| |||||||||||||| |||||||| ||| |||| |||||||||||| | |||
Sbjct 61 TCAACTCTTTTTCTCTTTGTTTTCTTCTATAAAAAAACAAATGATGGATTTGATTTGCCT 120
Query 124 CCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCATCTTCTCCTCTTTGCTTCAATC 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCACCTTCTCCTCTTTGCTTCAATC 180
Query 184 CACAAGTGTTTTCAAAAAATCTCATCCAAATACGGACCTTTTCTCCATCTTCGCATTTTC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACAAGTGTTTTCAAAAAATCTCATCCAAATACGGACCTTTTCTCCATCTTCGCATTTTC 240
Query 244 CATGTCCCCATTGTTCTTGTATCCTCTGCCTCAACGGCTTACGATATCTTCAAGACAAAC 303
|||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || ||
Sbjct 241 CATGTCCCCATTATTCTTGTGTCCTCTGCCTCAGCGGCTTACGATATCTTCAAGGCACAC 300
Query 304 GACATTAATGTCTCTTATCGTGGTGATGTTGCAATCGATGAATGCATTGTGTTTGGTTCT 363
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATATTAAAGTCTCTTATCGAGGTGATGTTGCAATCGATGAATGCATTGTGTTTGGTTCT 360
Query 364 TTTGGATATTTCCGAGCTCCATGTGAAGATTACTGGAAATTCATGAGAAAGCTCATCATG 423
| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 361 TCTGGATATTTCAGAGCTCCATCTGAAGATTACTGGAAATTCATGAGGAAGCTCATCATG 420
Query 424 GCCAGGGCACTCGGACCCCAAGCGCTAGAGCGGACACGTGGTGTTCGTGCAGCTGAGCTA 483
|| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 421 GCTAGGGCGCTTGGACCCCAAGCGCTAGAGCGGACACGTGGTGTTCGTGTAGCTGAGTTA 480
Query 484 GAGAGGTTTCATAGAAA-ATTACTCGATAAGGCTATGAAAAAACAAAGCCTTAAGATCGG 542
|| |||||||||||||| || |||||||||||| || |||||||||||||||||||||||
Sbjct 481 GAAAGGTTTCATAGAAATAT-ACTCGATAAGGCGATTAAAAAACAAAGCCTTAAGATCGG 539
Query 543 TGAAGAAGCAAGGATACTCGTTAACAACACCCTCGGAAAAATGAGCCTAGGAAGTAGTTT 602
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TGAAGAAGCAAGGATACTCGTTAACAACACCCTCGGAAAAATGAGCCTTGGAAGTAGTTT 599
Query 603 TTCAATAGAGAACAATGATGGGACAAAAGTTTCAGAATATTCTATCAAGTTAGCTGATTT 662
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 TTCAGTAGAGAACAATGATGGGACAAAAGTTTCAGAATTTTCTATCAAGTTAGCTGATTT 659
Query 663 GTCTCAAATGTTTTGTGTGGCACAAATATTTCATAAGCCGCTTGAGAAGCTAGGGATCTC 722
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 660 GTCTCAAATGTTTTGTGTGGCACAAATATTTCATAAGCCGCTAGAGAAGGTGGGGATCTC 719
Query 723 TCTTTTAAAGAAGCAGATTATGGATGTTTCACACAAATTTGAGGAGTTGCTAGAAAATAT 782
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TCTTTTAAAGAAGCAGATTATGGATGTTTCACATAAATTTGAGGAGTTGCTAGAAAATAT 779
Query 783 TGTTGTGAAGTACGAGGAAAAAATGGACAACCATCAAAGTACTGAATTCATGGATGCATT 842
| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 780 TCTTGTGAAGTACGAGGGAAAAATGAACGACCATCAAAGTACTGAATTCATGGATGCATT 839
Query 843 ATTGGCAGCTTATCAAGACGAAAACGCAGAGTATAAGATCACTAGAAACCATATCAAGGC 902
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 ATTGGCAGCTTATCAAGACGAAAACGCAGAGTATAAGATCACTAGGAACCATATCAAGGC 899
Query 903 ACTACTAGCGGAGCTTTTCTTTGGAGCCGGTGAATCATCTTCTTCAACAACAAGGTGGGC 962
| || |||||||||| ||||||||||||||||| || ||||||||||||||| | |||||
Sbjct 900 ATTATTAGCGGAGCTATTCTTTGGAGCCGGTGAGTCCTCTTCTTCAACAACACGATGGGC 959
Query 963 AATGGGAGAAATTTTCAACAATCCTAGGATCTTTGAGAAACTAAGA-ACAGAAATCGATT 1021
|||||||||||| |||||||| |||| ||||||||||| | | ||| | |||||| ||||
Sbjct 960 AATGGGAGAAATCTTCAACAACCCTAAGATCTTTGAGAGATTGAGAGA-AGAAATAGATT 1018
Query 1022 CAGTGGTGGGGACA-ACAAGGTTGATTCAAGAAAGTGATCTACCAAAACTTCCTTACTTG 1080
||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 TAGTGGTGGGAA-ATACAAGGTTGATTCAAGAAAGTGATCTACCAAAACTTCCATACTTG 1077
Query 1081 CAAGCAGTCGTGAAAGAATCTCTAAGATTACACCCGGTGGGAGCGGTCTTGCCAAGAGAA 1140
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 CAAGCAGTCGTCAAAGAATCTCTAAGATTGCACCCGGTGGGAGCGGTCTTGCCAAGAGAA 1137
Query 1141 TTTACGCAAGATTGTAACATTGGAGGGTTCTATATACATGAGGGAACATCACTTGTCGTT 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 TTTACACAAGATTGTAACATTGGAGGGTTCTATATACATGAGGGAACATCACTTGTCATC 1197
Query 1201 AATGCTTATGCTGTGATGAGAGATCCTGATATTTGGGAAGATCCTAATGAGTTTAAGCCG 1260
||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 AATGCTTATTCTATAATGAGAGATCCTGATATTTGGGAAGATCCTAATGAGTTTAAACCA 1257
Query 1261 GAAAGGTTTCTAGA-TGCCTCAAGATTAGGGCAAGAGGAGGAGAAAAAGGAGAAAACACT 1319
|| ||||||||| | | | ||||||| ||| |||||||| |||||||| ||| |||||||
Sbjct 1258 GAGAGGTTTCTA-ACTACTTCAAGATCAGGACAAGAGGAAGAGAAAAAAGAGCAAACACT 1316
Query 1320 AAAGTTCCTCCCATTTGGCGCTGGAAGGAGAGGATGTCCTGGATTATATCTTGGTTATAC 1379
|||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1317 AAAGTTCCTCCCTTTTGGCGCGGGAAGGAGAGGATGTCCTGGATTAAATCTTGGTTATAC 1376
Query 1380 CTTAGTAGAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAAATCGAAGGAGA 1439
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 CTTAGTAGAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAGATCGAAGGAGA 1436
Query 1440 TAAAGTCAACATGCAAGAAGGTTCCGGATTAAGATTTTTCTTGGATTTGGCTCATCCCCT 1499
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 TAAAGTCAACATGGAAGAAGGTTCAGGATTAAGATTTTTCTTGGATTTGGCTCATCCCCT 1496
Query 1500 TAAGTGCACTCCTATTCCTCGAATCATAAATCATGAACCTTCTAATACGCAGATTCCAAA 1559
||||||||||||| || |||||||||||||||||||| ||||||||| ||| ||| ||||
Sbjct 1497 TAAGTGCACTCCTGTTGCTCGAATCATAAATCATGAATCTTCTAATATGCAAATTTCAAA 1556
Query 1560 TTCGTG 1565
||||||
Sbjct 1557 TTCGTG 1562
> Ahg930044 jgi|Araly1|930044|scaffold_302501.1
Length=944
Score = 263 bits (142), Expect = 3e-69
Identities = 357/458 (78%), Gaps = 25/458 (5%)
Strand=Plus/Plus
Query 1011 AGAAATCGATTCAG-TGGTGGGGACAACAAGGTTGATTCAAGAAAGTGATCTACCAAAAC 1069
|||||||||||| | | || |||||| |||||||||||||||||| ||| ||||||| |
Sbjct 402 AGAAATCGATTCCGCT-GTAGGGACATCAAGGTTGATTCAAGAAACAGATATACCAAACC 460
Query 1070 TTCCTTACTTGCAAGCAGTCGTGAAAGAATCTCTAAGATTACACCCGGTGGGAGCGGTCT 1129
||||||| |||||||| || || || ||| |||||||| ||||| | ||
Sbjct 461 TTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGATTGCACCCACCATTTCCTCTCC 520
Query 1130 TGCCAAGAGAA-TTT-ACGCAAGATTGTAACATTGGAGGGTTCTATATACATGAGGGA-A 1186
|| | || ||| ||| | | ||| ||| | || ||||||||| || | || | | |
Sbjct 521 TGACGAG-GAAGTTTGAAGAAAG-GTGTGAGATCAAAGGGTTCTACATTCCGGA-GAAGA 577
Query 1187 CATCACTTGTCGTTAATGCTTATGC-TGTGATGAGAGATCCTGATAT-TTGGGAAGATCC 1244
||| ||||| ||||||||||||| || |||||||||||||||| | |||||||||||
Sbjct 578 CATTTCTTGTTATTAATGCTTATGCTTG-GATGAGAGATCCTGAT-TCCTGGGAAGATCC 635
Query 1245 TAATGAGTTTAAGCCGGAAAGGTTTCTAGATGCCTCAAGATTAGGGCAAGAGGAGGAGAA 1304
|||||||||||||||||| |||||||||| | | ||||||||||| ||||| || ||||
Sbjct 636 TAATGAGTTTAAGCCGGAGAGGTTTCTAGGTTCTTCAAGATTAGGACAAGAAGACGAGAG 695
Query 1305 AAAGGAGAAAACACTA-AAGTTCCTCCCATTT-GGCG-CTGGAAGGAGAGGATGTCCTGG 1361
|||| || | | | |||| | | || ||| |||| | ||||||||||| ||||||||
Sbjct 696 ---GGAGGAAGCTC-AGAAGTACATTCC-TTTCGGCGGC-GGAAGGAGAGGCTGTCCTGG 749
Query 1362 AT-TATATCTTGGTTATACCTT-AGTAGAAACCACAATTGGAGTGATGGTGCAATGCTTT 1419
|| || |||| | || || || | ||| |||| | ||||||||||||||||| ||||||
Sbjct 750 ATCTA-ATCTAGCTTCTATTTTCA-TAGGAACCGCGATTGGAGTGATGGTGCAGTGCTTT 807
Query 1420 GACTGGGAAATCGAAGGAGATAAAGTCAACATGCAAGA 1457
||||||| |||| |||||||||| ||||| ||| ||||
Sbjct 808 GACTGGGGAATCAAAGGAGATAAGGTCAATATGGAAGA 845
> Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1
Length=1489
Score = 165 bits (89), Expect = 9e-40
Identities = 351/476 (74%), Gaps = 24/476 (5%)
Strand=Plus/Plus
Query 108 TGGATTTGATGTACCTCCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCATCTTCT 167
||| |||||| | |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 111 TGGGTTTGATTTGCCTCCAAGCCCTCCTTCTCTGCCAATCATTGGTCATCTTCATCTTCT 170
Query 168 CCTCTTTGCT-TCAATCCACAAGTGTTTTCAAAAAATCTCATCCAAATACGGACCTTTTC 226
||||| | || | || |||||||| || || ||| |||| ||||| || |||||||| |
Sbjct 171 CCTCTCTACTCT-AACCCACAAGTCCTTACAGAAACTCTCCTCCAAGTATGGACCTTTCC 229
Query 227 TCCATCTTCGCATTTTCCATGTCCCCATTGTTCTT-GTATCCTCTGCCTCAACGGCTTAC 285
||||||| || || ||| ||||||| | | ||| || ||||| || || || |||
Sbjct 230 TCCATCTCCGTATCTTCAATGTCCCTGTAAT-CTTTGTTTCCTCGGCTTCTGTAGCATAC 288
Query 286 GATATCTTCAAGACAAACGACATTAATGTCTCTTATCGTGGTGATGTTGCAATCGATGAA 345
|| ||||||| | || | || | || |||||| ||| || | | | || | ||
Sbjct 289 GAGATCTTCAGGGCACATGATGTGAACATCTCTTTTCGCGGCAACCCTCCTGTCAAAGAG 348
Query 346 TGCAT-TGTGTTTGGTTCTTTTGGATATTTC-CGAGCTCCATGTGA-AGATTACTGGAAA 402
| | | | || |||| |||| ||| | |||| | ||||| | || | |||| |||||
Sbjct 349 TCCCTCT-TGGTTGGATCTTCTGGCTTTTTCACC-GCTCCTTATGGCA-ATTATTGGAAG 405
Query 403 TTCATGAGAAAGCTCATCATGGCCAGG--GCA-CTCGGACCCCAAGCGCTAGAGCGGACA 459
||||||| |||||| | |||| || | || |||||||| || || || ||||| ||
Sbjct 406 TTCATGAAAAAGCT-A--ATGGTCACGAAGCTGCTCGGACCGCAGGCACTCCAGCGGTCA 462
Query 460 CGTGGTGTTCGTGCAGCTGAGCTAGAGA-GGTTTCATA-GAAAATTACTCGATAAGGCTA 517
|| || | ||||||| ||||||||| | ||||| | | | | || || |||||||| |
Sbjct 463 CGAGGCATCCGTGCAGATGAGCTAGA-ACGGTTTTACAAGCACCTT-CTTGATAAGGCAA 520
Query 518 TGAAAAAACAA-AGCCTTAAGATCGGTGAAG-AAGCAAGGATACTCGTTAACAACA 571
||| || | | ||| || |||| ||| ||| |||||| || |||| |||| ||||
Sbjct 521 GGAAGAA-CGAGAGCATTGAGATTGGT-AAGGAAGCAATGAAACTCATTAATAACA 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5