BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28470.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921902 jgi|Araly1|921902|scaffold_103183.1 1543 0.0
> Ahg921902 jgi|Araly1|921902|scaffold_103183.1
Length=995
Score = 1543 bits (835), Expect = 0.0
Identities = 944/995 (95%), Gaps = 14/995 (1%)
Strand=Plus/Plus
Query 55 AGAGAGATCAGTAAAATAAGAAGGATGAGTTGGTGTGATGGTTCAGATGATAACTACGAT 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGATCAGTAAAATAAGAAGGATGAGTTGGTGTGATGGTTCAGATGATAACTACGAT 60
Query 115 CTTAATCTTGAAAGAGTATCGAACACTGATCATCCATCGGTTCAACTCAAAGACCAATCT 174
||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CTTAATCTTAAAAGAGTATCAAACATTGATCATCCATCGGTTCAACTCAAAGACCAATCT 120
Query 175 CAATCATGTGTAACGAGCCGTCCAGATTCCAAGA-TTAGCGCTGAAACTCCCATCACGA- 232
||||||||||| |||||| ||||||||||||| | ||| || |||||||||||||| ||
Sbjct 121 CAATCATGTGTCACGAGCGGTCCAGATTCCAA-ATTTAACGTTGAAACTCCCATCATGAG 179
Query 233 --CTTGTCCTTCTTGCGGACACAAGCTCCATCATCACCAAGACGACCAGGTTGGTAGCAT 290
||||||||||||| ||||||||| | | |||||||||||||||||||||||| ||||
Sbjct 180 TTCTTGTCCTTCTTGTGGACACAAGAT-C--CATCACCAAGACGACCAGGTTGGTGGCAT 236
Query 291 CAAAGATTTACCAAGCTTACCGGCAGGAGTCAAATTCGATCCGTCGGATAAAGAGATCCT 350
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 CAAAGATTTACCAAGCTTACCGGCAGGAGTCAAATTCGACCCGTCGGATAAAGAGATCCT 296
Query 351 TATGCATTTGGAGGCGAAGGTATCATCCGATAAGCGAAAACTTCATCCGTTGATTGATGA 410
||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 297 TATGCATTTAGAGGCGAAGGTATCATCAGATAAGCGAAAACTTCATCCCTTGATCGATGA 356
Query 411 ATTTATACCTACGCTTGAAGGAGAGAATGGAATTTGTTATACGCATCCTGAGAAACTTCC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATTTATACCTACGCTTGAAGGAGAGAATGGAATTTGTTATACGCATCCTGAGAAACTTCC 416
Query 471 TGGAGTAAGCAAGGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATAC 530
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGAGTAAGCAAAGACGGGCAAGTACGGCACTTCTTCCACCGGCCATCAAAGGCTTATAC 476
Query 531 GACCGGAACACGAAAACGAAGAAAAGTGAGCACAGATGAGGAAGGCCATGAAACAAGGTG 590
||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||||||
Sbjct 477 GACAGGAACACGAAAACGTAGAAAAGTTAGCACAGATGAGGAAGGTCACGAAACAAGGTG 536
Query 591 GCACAAAACAGGCAAGACTCGACCTGTTTTGTCTCAATCAGGAGAAACCGGTTTCAAGAA 650
||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 537 GCACAAAACGGGCAAGACCCGACCCGTTTTGTCTCAATCAGGAGAAGCCGGTTTCAAGAA 596
Query 651 GATCCTAGTGCTCTACACCAACTATGGTCGCCAGAAGAAGCCTGAGAAGACGAATTGGGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GATCCTAGTGCTCTACACCAACTATGGTCGCCAGAAGAAGCCTGAGAAGACGAATTGGGT 656
Query 711 GATGCATCAGTATCATTTAGGTAGCAGCGAGGACGAAAAAGACGGTGAACCAGTCCTCTC 770
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 GATGCATCAGTATCATTTAGGTAGCAGCGAGGACGAAAAAGACGGTGAACCTGTCCTCTC 716
Query 771 TAAAGTCTTCTACCAAACACAGCCTAGGCAATG---CGGTTCGATGGAACCTAAACCGAA 827
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 717 GAAAGTCTTCTACCAAACACAGCCTAGGCAATGTGGCGGTTCGATGGAACCTAAACCGAA 776
Query 828 AAATCTCGTAAACCTAAACCGGTTTAGTTATGAAAATATTCAGGCCGGTTTCGGGTATGA 887
||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||
Sbjct 777 AAATCTCGTAAACCTAAACCGGTTTAGTTATGATAATATTCAGACGGGTTTTGGGTATGA 836
Query 888 GCATGGTGGTAAAAGTGAAGAG---ACGACGCAGGTGATTCGAGAGTTGGTAGTTCGTGA 944
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 837 ACATGGAGGTAAAAGTGAAGAGCCGACGACGCAGGTGATTCGAGAGTTGGTGGTTCGTGA 896
Query 945 AGGCGATGGGTCATGTTCGTTTCTTAGTTTTACTTGTGATGCAAGTAAGGGTAAAGAAAG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGGCGATGGGTCATGTTCGTTTCTTAGTTTTACTTGTGATGCAAGTAAGGGTAAAGAAAG 956
Query 1005 CTTCATGAAGAATCAATAGAACATAACatatataa 1039
|||||||||||||||||||||||||| |||| |||
Sbjct 957 CTTCATGAAGAATCAATAGAACATAATATATTTAA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5