BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28480.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473065 jgi|Araly1|473065|fgenesh2_kg.1__3019__AT1G28480.1         616    8e-176


> Ahg473065 jgi|Araly1|473065|fgenesh2_kg.1__3019__AT1G28480.1
Length=506

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 406/439 (92%), Gaps = 14/439 (3%)
 Strand=Plus/Plus

Query  12   AAAACATACTTGAAAATGCAAGGAACGATTTCTTGTGCAAGAAATTATAACATGACGACA  71
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||
Sbjct  1    AAAACATACTTGAAAATGCAAGGAACGATTTCTTGTGCAAGAAACTATAACATGAC--CA  58

Query  72   ACCGTCGGGGAATCTCTGCGGCCGCTATCGCTTAAAACGCAGGGAAACGGCGAGAGAGTT  131
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct  59   -CCGTCGGGGAATCTCTGCGGCCGCTACCGCTTAAAACACAGGGAAACGGCGAGAGCGTT  117

Query  132  CGGATGGTGGTGGAGGAGAACGCGGTGATTGTGATTGGACGGAGAGGATGTTGCATGTGT  191
             || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  118  AGGGTGGTGGTGGAGGAGAACGCGGTGATCGTGATTGGACGGAGAGGATGTTGCATGTGT  177

Query  192  CATGTGGTGAGGAGGCTGCTTCTTGGACTTGGAGTGAATCCGGCGGTCCTTGAGATTGAT  251
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  178  CACGTGGTGAGGAGGCTGCTTCTTGGACTTGGAGTGAATCCGGCGGTTCTTGAGATTGAT  237

Query  252  GAGGAGAGGGAAGATGAAGTTTTGAGTGAGTTGGAGAATATTGGAGTTCAAGGCGGCGGA  311
            |||||||||||||| ||||| ||| ||||||||||||     ||| ||   |||||||||
Sbjct  238  GAGGAGAGGGAAGAGGAAGTCTTGCGTGAGTTGGAGA-----GGA-TT---GGCGGCGGA  288

Query  312  GGTACGGTGAAGTTACCGGCGGTTTATGTAGGAGGGAGGTTGTTTGGAGGGTTAGATAGG  371
            |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  289  GACACGGTGAAGTTACCGGCGGTTTATGTAGGAGGGAGGTTGTTTGGAGGATTAGATAGA  348

Query  372  GTTATGGCTACTCATATCTCCGGTGAGTTAGTTCCAATTCTTAAGGAAGTTGGGGCTCTG  431
            |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  349  GTTATGGCCACTCATATCTCCGGTGAGTTAGTTCCAATTCTTAAGGAGGCTGGGGCTCTG  408

Query  432  TGGTTGTGATTGTA-AATT  449
            ||||||||||| || ||||
Sbjct  409  TGGTTGTGATT-TATAATT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5