BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28490.1 Length=1076 Score E Sequences producing significant alignments: (Bits) Value Ahg473066 jgi|Araly1|473066|fgenesh2_kg.1__3020__AT1G28490.1 1609 0.0 > Ahg473066 jgi|Araly1|473066|fgenesh2_kg.1__3020__AT1G28490.1 Length=1010 Score = 1609 bits (871), Expect = 0.0 Identities = 968/1014 (95%), Gaps = 9/1014 (1%) Strand=Plus/Plus Query 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTCACGCCGGAAT-CTCTTTTACTTCA 59 ||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | || Sbjct 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTGACGCCGGAATCCT-TTTTAGTGCA 59 Query 60 CCGTCGTTTGTTCTCCGTCGCGTCACCTTTCGATTAATTCCTTCACAGGGT-AGCAAAAT 118 |||||||||||||||||||||||||| |||||||||||||||||||| ||| || || | Sbjct 60 CCGTCGTTTGTTCTCCGTCGCGTCACGTTTCGATTAATTCCTTCACAAGGTAAG-AAGCT 118 Query 119 TTTGTTGA-TTTCGGGATGTCTTCAGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177 | | | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 TCT-TCAATTTTCGGGATGTCTTCTGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177 Query 178 TCAGGATTCTATTGATAAGTTGCAATCTACATTCCACAAATGGGAGCGTATCTCTCCCGA 237 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 178 CCAGGATTCTATTGATAAGTTGCAATCAACATTCCACAAATGGGAGCGTATCTCTCCCGA 237 Query 238 CATGGGTGATCAAGCACATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CATGGGGGATCAAGCGCATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297 Query 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCAAAAGATCCTTCATGGTATGG 357 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCTAAAGATCCTTCATGGTATGG 357 Query 358 CATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417 Query 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCAGGTCATGCAAG 477 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCTGGTCATGCAAG 477 Query 478 TGAAGTGCGTAGAGAACTAATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATATGATCA 537 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 478 TGAAGTGCGCAGAGAACTGATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATACGATCA 537 Query 538 GTATGGAGGGAGAGACGATGATGGTTTTGTACAGTCAGAATCAGATAGGCAAATGCTGTT 597 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 538 GTATGGAGGGAGAGACGATGACGGTTTTGTACAGTCAGAATCGGATAGGCAAATGCTGTT 597 Query 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTTAGTAAAAGTGTACAGAGAATTGGAGG 657 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTCAGTAAAAGTGTACAGAGAATTGGAGG 657 Query 658 AGTGGGGCTCACTATACACGACGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 658 AGTGGGGCTCACTATACACGATGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717 Query 718 TACGGAGATGGACAGCACAAAGAACCGTCTTGAATTTGTTCAGAAAAAAGTGGGAATGGT 777 ||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||| Sbjct 718 TACGGAGATGGACAGTACAAAGAACCGGCTGGAGTTTGTTCAGAAAAAAGTGGGAATGGT 777 Query 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837 Query 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGAACAGAGCCGCGGGATCTTATAGA 897 ||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||| Sbjct 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGACC-GAGCCACTGGATCTTATAGA 896 Query 898 TGGGAGTTTAATGTCTTACATTATCAT--GTTTGTGGTGAAACAAATGGAATATTTACAT 955 ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| Sbjct 897 TGGGAGTTTAATGTCTTACATTATCATATGTTTTTGGTGAAACAAAAGGAATATTTACAT 956 Query 956 AAGGTTGTCTGTTTTTTCTTCTCCTATCCAATCCCACATATAATTTTGAACTTT 1009 ||||||||||||||||||||||| |||||||||||| || |||||||||||||| Sbjct 957 AAGGTTGTCTGTTTTTTCTTCTCTTATCCAATCCCATATCTAATTTTGAACTTT 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40067185767 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5