BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28490.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473066 jgi|Araly1|473066|fgenesh2_kg.1__3020__AT1G28490.1 1609 0.0
> Ahg473066 jgi|Araly1|473066|fgenesh2_kg.1__3020__AT1G28490.1
Length=1010
Score = 1609 bits (871), Expect = 0.0
Identities = 968/1014 (95%), Gaps = 9/1014 (1%)
Strand=Plus/Plus
Query 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTCACGCCGGAAT-CTCTTTTACTTCA 59
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||
Sbjct 1 GGTGATGCGTTTTGCTATGTAAGAGAGACGAATCTGACGCCGGAATCCT-TTTTAGTGCA 59
Query 60 CCGTCGTTTGTTCTCCGTCGCGTCACCTTTCGATTAATTCCTTCACAGGGT-AGCAAAAT 118
|||||||||||||||||||||||||| |||||||||||||||||||| ||| || || |
Sbjct 60 CCGTCGTTTGTTCTCCGTCGCGTCACGTTTCGATTAATTCCTTCACAAGGTAAG-AAGCT 118
Query 119 TTTGTTGA-TTTCGGGATGTCTTCAGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177
| | | | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 TCT-TCAATTTTCGGGATGTCTTCTGCTCAAGATCCATTCTACATTGTTAAAGAAGAGAT 177
Query 178 TCAGGATTCTATTGATAAGTTGCAATCTACATTCCACAAATGGGAGCGTATCTCTCCCGA 237
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 178 CCAGGATTCTATTGATAAGTTGCAATCAACATTCCACAAATGGGAGCGTATCTCTCCCGA 237
Query 238 CATGGGTGATCAAGCACATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATGGGGGATCAAGCGCATGTGGCGAAGGAGCTTGTTGCTACTTGTGGAAGCATTGAGTG 297
Query 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCAAAAGATCCTTCATGGTATGG 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GCAGGTAGATGAGCTGGAAAAAGCGATTACTGTTGCAGCTAAAGATCCTTCATGGTATGG 357
Query 358 CATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATTGATGAAGCTGAGCTTGAAAAACGGAGGAGATGGACTAGTAATGCTAGGACACAGGT 417
Query 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCAGGTCATGCAAG 477
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 GCGGAATGTGAAGTCTGGTGTTTTAGCTGGAAAGGTTAGTTCTGGAGCTGGTCATGCAAG 477
Query 478 TGAAGTGCGTAGAGAACTAATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATATGATCA 537
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TGAAGTGCGCAGAGAACTGATGAGAATGCCAAACTCGGGTGAAGCAAGTAGATACGATCA 537
Query 538 GTATGGAGGGAGAGACGATGATGGTTTTGTACAGTCAGAATCAGATAGGCAAATGCTGTT 597
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 538 GTATGGAGGGAGAGACGATGACGGTTTTGTACAGTCAGAATCGGATAGGCAAATGCTGTT 597
Query 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTTAGTAAAAGTGTACAGAGAATTGGAGG 657
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 GATAAAGCAACAAGACGAAGAATTGGATGAGCTCAGTAAAAGTGTACAGAGAATTGGAGG 657
Query 658 AGTGGGGCTCACTATACACGACGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGGGGCTCACTATACACGATGAACTCGTTGCACAGGAGAGAATAATAGATGAATTGGA 717
Query 718 TACGGAGATGGACAGCACAAAGAACCGTCTTGAATTTGTTCAGAAAAAAGTGGGAATGGT 777
||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 718 TACGGAGATGGACAGTACAAAGAACCGGCTGGAGTTTGTTCAGAAAAAAGTGGGAATGGT 777
Query 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGAAGAAAGCTGGAGCAAAAGGTCAAATGATGATGATATGTTTCTTGCTCGTCTTGTT 837
Query 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGAACAGAGCCGCGGGATCTTATAGA 897
||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||
Sbjct 838 CATCATCCTATTCGTTCTTGTCTTCTTGACCTAAAGACC-GAGCCACTGGATCTTATAGA 896
Query 898 TGGGAGTTTAATGTCTTACATTATCAT--GTTTGTGGTGAAACAAATGGAATATTTACAT 955
||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 897 TGGGAGTTTAATGTCTTACATTATCATATGTTTTTGGTGAAACAAAAGGAATATTTACAT 956
Query 956 AAGGTTGTCTGTTTTTTCTTCTCCTATCCAATCCCACATATAATTTTGAACTTT 1009
||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 957 AAGGTTGTCTGTTTTTTCTTCTCTTATCCAATCCCATATCTAATTTTGAACTTT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5