BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28500.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921905 jgi|Araly1|921905|scaffold_103186.1 1210 0.0
Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1 243 3e-63
Ahg904932 jgi|Araly1|904932|Al_scaffold_0003_2060 211 7e-54
Ahg925674 jgi|Araly1|925674|scaffold_201235.1 65.8 6e-10
> Ahg921905 jgi|Araly1|921905|scaffold_103186.1
Length=998
Score = 1210 bits (655), Expect = 0.0
Identities = 822/901 (91%), Gaps = 17/901 (2%)
Strand=Plus/Plus
Query 1 ATGTCGACGGAGGA-TGCTCTGTGTTTTACGGGGGAGGAATATGCCCGTCATGTGAGGGA 59
||| |||||||||| || | || |||||||| |||||||||| ||||||||||||| ||
Sbjct 22 ATGACGACGGAGGATTG-TGAGTATTTTACGGCGGAGGAATATTCCCGTCATGTGAGAGA 80
Query 60 GTACTGGCGTGGAGTGGCGGAATCCGATGGTTTTGAT-TCCGAGGATATTCGA-AGTCCA 117
|||||||||| |||||||||||| |||||||||||| | |||||| ||| || ||||||
Sbjct 81 ATACTGGCGTGCAGTGGCGGAATCGGATGGTTTTGATAT-CGAGGACATT-GATAGTCCA 138
Query 118 GTAGTGCTTACTGGACTG-TTTCACTACGACTGTCAATCTGGTCGTCGTTATCCTGACCC 176
||||| |||||||||||| |||| |||||||||||||| |||| |||||||||||| ||
Sbjct 139 GTAGTACTTACTGGACTGTTTTC-CTACGACTGTCAATGTGGTTATCGTTATCCTGAGCC 197
Query 177 TCTCTTGGTCAAGCGATATGCTTTGTTGGGGCTTCATCGTTTCAATATTTTGCAGGGGAC 236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 198 TCTCTTGGTCAAGCGATATGCTTTGTTGGGGCTTCATCGTTACAATATTTTGCAGGGGAC 257
Query 237 AAGTTTCGAGCTCGATGCCCTACAGAAATTCAACAAGACAATGAACCTTACGTCTTCGTA 296
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 258 AAGTTTCGAGCTCGCTACCCTACAAAAATTCAACAAGACAATGAACCTTACGTCTTCGTA 317
Query 297 CTACATTACTTTGCTTGCAAACGAGCCAGGAGCTATTCCTTTGCAGAAAACCTTTCAGGT 356
|||||||||| ||||||| || | | || | | || ||||||||||||||||||||
Sbjct 318 CTACATTACTCTGCTTGC--AC-A---A-GATCCA--CCATTGCAGAAAACCTTTCAGGT 368
Query 357 TCGAGTTGATGAACGAAAATATGACACTTTGGATTTGACAGTCGCTATTGCTAGGCTTAA 416
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||
Sbjct 369 TCGAGTTGATGAACGAGCATATGACAGTTTGGATTTGACAGTCGCTATTGCTAGACCTAA 428
Query 417 AAAAGATCAAAATGAAGCGGCGGAGACCACCAAGGAGCCCTTCGTACCTCACTTTTGTTG 476
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
Sbjct 429 AAAAGATCAAAATGAAGCGGCGGTGACCACCAAGGAGCCCTTCATACCTCACTTTCATGG 488
Query 477 TAGCGCAGTGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGATGC 536
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 489 TGGCGCAGTGGCGGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGGTGC 548
Query 537 TTTGCGTCATGATAGAAACCGATTTTACGAGCTAGAGAAATCAGAGTGGCAAGCCACTGA 596
||| | | ||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 549 TTTTCATGATGATAGAAGCCGGTTTTACGCGCTAGAGAAATCAGAGTGGCAAGCCACTGG 608
Query 597 TTGGATTTCTCTTTATTTGGAACTTTTGATTTTAGCAACTGATAGAGGAATGTTTGGTGT 656
|||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||| |
Sbjct 609 TTGGATTTCTCTATATTTGGAACTTTTGATTTTAGCAAATGATAAAGGGATGTTTGGTAT 668
Query 657 AGCGCAGACTGGTCTGCCTCAGGTTCAGATTCTGAAAGTGGTGATTGAAACTGAGGAAGA 716
|| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||
Sbjct 669 AGTGCAGACTGGTCTGCCCCAGGTTCAGATTCTGGAAGTGGTGATTGAAACTAAGGAAGA 728
Query 717 AAATGAGAAGCCCCTGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTT 776
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AGATGAGAAGCCCCCGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTT 788
Query 777 TACGGGCTTGCCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGAACGCAAAGC 836
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 789 TACGGGCTTGGCCAAGTCCCCACGTCTTGTTGAGATTGGTGAGCATGTTGCACGCAAAGC 848
Query 837 TATCATTAGAAGAGTCATCGATGATTCAGGATACTTGACTCTCCTTGGTAAGTTTTGGAG 896
||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 849 TATCATTAGAAGAGTTATCGATGATTCAGGATACTTGACTCTTCAGGGTAAGTTTTGGAG 908
Query 897 T 897
|
Sbjct 909 T 909
> Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1
Length=1265
Score = 243 bits (131), Expect = 3e-63
Identities = 369/478 (77%), Gaps = 40/478 (8%)
Strand=Plus/Plus
Query 491 ATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGATGCTTTGCGTCATGATA 550
||||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 663 ATGGTATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATGCTTT-CA--ATGACG 719
Query 551 GAAACCGATTTTACGAGCTAGAGAAATCAGAGTGGCAAGCCACTGATTGGATTTCTCTTT 610
|||| ||||||||| | || || |||||||||||||| ||||||||||||||||| | |
Sbjct 720 GAAAACGATTTTACCTGGTAAAGGAATCAGAGTGGCAATCCACTGATTGGATTTCTATGT 779
Query 611 ATTTGGAACTTTTGATTT-TAGCAACTGATAGAG--GA--A-TGTTTGGTGT-AGCGCAG 663
||||||||||| | ||| || |||||||||| | || | || | || || ||
Sbjct 780 ATTTGGAACTTGTAATTACTA-CAACTGATAG-GTCGATCACTGAAACGCGTCAGA--AG 835
Query 664 ACTG--GT-CTG-CCTCAGGTTC-AGATTCTGAAAGTGGTGATTGAAACTGAGGAA-GAA 717
|| | || ||| || ||| || ||||| ||||||||| ||| ||||||| || |||
Sbjct 836 ACCGAAGTTCTGTCC-CAG-TTGGAGATTGTGAAAGTGGCGATAGAAACTGCT-AATGAA 892
Query 718 AATGAGAAGCC-CCTGGATAAGAGACTCAATGCCAGAAGGGCACATGTCTATATAACTTT 776
||| | |||| || | || |||||||||| |||| ||| ||||||||||| ||||| ||
Sbjct 893 GATGTGGAGCCGCC-GAATGAGAGACTCAAGGCCAAAAGTGCACATGTCTACATAACGTT 951
Query 777 TACGGGCTTGCCCA-AG--TC---CCCA-CGTC---TTGTTGAGATTGGTGAGCATGTTG 826
|| ||||||| | | || || ||| || | || |||||| ||||||||||||||
Sbjct 952 TAAGGGCTTGGC-AGAGCCTCGAGCCCCTCGGCGGGTTTTTGAGAATGGTGAGCATGTTG 1010
Query 827 AACGCAAAGCTATCA-TTAGAAGAGTCATCGATGATTCAGGATACTTGACTCTCCTTGGT 885
||||| ||||||| | ||||||||||||| ||| | ||||||||||||||||| |||
Sbjct 1011 AACGCCAAGCTAT-AGTTAGAAGAGTCATGGATCACACAGGATACTTGACTCTCAAGGGT 1069
Query 886 AAGTTTTG-GAGTGGTAAAGATACCGAGCAGCGTTCTAAGACTCGCCAGAGTGAAGAA 942
||| |||| | ||||| || ||| | | |||||||| | ||| | |||||| ||||
Sbjct 1070 AAGCTTTGTG-GTGGTCAATATATCAAAAAGCGTTCTCTGGCTCTCAAGAGTGGAGAA 1126
Score = 145 bits (78), Expect = 7e-34
Identities = 341/458 (74%), Gaps = 58/458 (13%)
Strand=Plus/Plus
Query 129 TGGACTGTTTCACTACGACTGTCAATC-TGGT-CGTCGTTATCC-TGACCCTCTCTTGGT 185
||||||| ||| ||| |||||||| | | | | |||||||| | | | | |||||||
Sbjct 193 TGGACTGATTCCCTATTACTGTCAA-CTTTATAAG-CGTTATCCAT-ATCGTATCTTGGT 249
Query 186 CAAGCGATATGCT-TTGTTGGGGCTTCATCGTTTCAATATT-TTGC-AGGGGACAAGTTT 242
| | | | |||| ||| ||||||||||||| |||| || || | |||| ||||| ||
Sbjct 250 CGACCTTTTTGCTAAGGTT-GGGCTTCATCGTTACAAT-TTGTT-CAAGGGAACAAGCTT 306
Query 243 CGAGCTCGATGCCCTACA-GAAATTCAACAAG--ACAATGAACCT-TACGTCTTCGTACT 298
|||| ||| ||||||| | ||||||||||| | || | ||| || || ||| || | ||
Sbjct 307 CGAGGTCGCTGCCCTA-ATGAAATTCAACATGTTAC-A-GAA-CTATATGTCCTCTTTCT 362
Query 299 ACATTACTTTGCTTGCA-A--A---CGAGCCAGGAGCTATTC-CTTTGCAGAAAACCTTT 351
|||| ||| |||||||| | | ||| |||| |||| | | |||||||||||||||
Sbjct 363 ACATGACTCTGCTTGCACATGATCCCGATCCAGCTGCTA-GCTCATTGCAGAAAACCTTT 421
Query 352 CAGGTTCGAGTTGATGAACGAA-AATATGACACTTTGGATTTGACAGTCGCT--ATTGCT 408
||||||||||||||||||| || | |||| ||||||| || | || || ||| ||||||
Sbjct 422 CAGGTTCGAGTTGATGAAC-AAGATTATGGCACTTTGCATATAAC-GT-GCTCCATTGCT 478
Query 409 AGGCTTAAAAAAGATCAAAATGAAGCGGCGGAGACCACC-AAGGA-GCCCTTC-GTACCT 465
|| | | |||| | ||| | | ||||| || | ||||||| | ||||
Sbjct 479 AGACCT---AAAG--C----CGAA------GTGTCCACCGAA--ACGCCCTTCAG-ACCT 520
Query 466 CACTTTTGTTGTAGCGCAGTGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCC 525
|||||| | || ||||| || | |||||| ||||| ||||| ||||||||||||||||
Sbjct 521 CACTTTCATGGTGGCGCACTGGCCGATGGTATCTTCAAAGGTGAATTGCCTGATTGGCCC 580
Query 526 TCAGATGATGCTTTGCGTCATGATAGAAACCGATTTTA 563
||||||||||||||| |||| |||| ||||||||
Sbjct 581 TCAGATGATGCTTTGA---ATGACGGAAAACGATTTTA 615
> Ahg904932 jgi|Araly1|904932|Al_scaffold_0003_2060
Length=861
Score = 211 bits (114), Expect = 7e-54
Identities = 541/734 (74%), Gaps = 81/734 (11%)
Strand=Plus/Plus
Query 193 TATGCT-TTGTTGGGGCTTCATCGTTTCAATATT-TTGC-AGGGGACAAGTTTCGAGCTC 249
|||||| | ||| || ||||| | || |||| || | | ||||||||| ||| ||| |
Sbjct 163 TATGCTATGGTT-GGTCTTCACCATTACAAT-TTGCT-CAAGGGGACAAACTTCCAGCAC 219
Query 250 GATGCCCTACAGAAATTCAACAAGACAATGAAC-CT-TACGTCTTCGTACTACATTACTT 307
||| | ||| ||||| ||||||| |||||||| | |||| | || |||||||| ||||
Sbjct 220 CATGACTTACTGAAATACAACAAGTCAATGAACTGTGTACG-C-TCTTACTACATAACTT 277
Query 308 TGCTTGC-AAACGAGCCAGGAGCTATTCC--TTTGCAGAAAACCTTTCAGGTTCGAGTTG 364
| |||| | || | ||| || ||| ||||||||||||||| |||||||||
Sbjct 278 CGGTTGCTGTA-GA-TC--TTTCTA-GCCAATTT-CAGAAAACCTTTCAGATTCGAGTTG 331
Query 365 ATGAACGAAAA--TAT-GACACTTTGGATTTGACAGTCGCTATTGCTAGGCTTAAAAAAG 421
||||| |||| ||| | | |||||||||||| ||| |||||||||| || ||||
Sbjct 332 ATGAA--AAAAGTTATGGGGA-TTTGGATTTGACGGTCTCTATTGCTAGAATT---AAAG 385
Query 422 ATCAAAATGAAGCGGCGGAGACCACCA-AGGAGCCCTTCGTACCTCACTTT--TGTTGTA 478
|| || | ||| | ||||| || || ||| ||| ||| ||||||| || || |
Sbjct 386 ATGAAGA-GAA-----AGTGACCA-CACAGAAGCGTTTCATACATCACTTTCATGGTG-A 437
Query 479 GCGCAG-TGTCAGATGGTGTCTTCCAAGGTCCATTGCCTGATTGGCCCTCAGATGATGCT 537
|||| | | |||| | ||| ||||||| |||||||||||||||| |||| ||||| |
Sbjct 438 -AGCAGACG-CGGATGATTTCTACCAAGGTGCATTGCCTGATTGGCCATCAGTTGATGAT 495
Query 538 TTGCGTCATGAT-AGAAACCGATTTTACGAGCTAGA--GAAATCAGAGTGGCAAGCCACT 594
|| | ||||| | ||| ||||||||| | | || | ||||||| | ||| ||| |
Sbjct 496 TT---TAATGATCA-AAAACGATTTTACCTGGT-GACTG-AATCAGATTTTCAATCCAAT 549
Query 595 GATTGGATTTC-TCTTTATTTGGAACTTTTG-A-TTT-TAGCAACTGATAG-AGGAATGT 649
||||||| ||| ||||||||| ||| | ||| | ||| | | || | | | | | |||
Sbjct 550 GATTGGA-TTCGTCTTTATTT-GAA-TCTTGCAGTTTGT-G-GAC-G-TCGTAAG-ATGA 601
Query 650 TTGGTGTAGCGCAGACTGGTCTGCCTCAGGTT-CAGATTCTGAAAGTGGTGATTGAAACT 708
| | | | ||| || | || | || ||| |||||||||||||||| || ||||||
Sbjct 602 CT--T-CA--G-AGAATGATTTGTC-CAAGTTGCAGATTCTGAAAGTGGCAATAGAAACT 654
Query 709 GAGGAAGAAAATGAGAAGCC-CCTGGA-TAAGAGACTCAATGCCAGAAGGGCACATGTCT 766
|||||||| || | |||| || || || ||||||||| |||| ||| ||| ||||||
Sbjct 655 AAGGAAGAAGATTTGCAGCCACC--GAGTAGGAGACTCAAGGCCAAAAGTGCATATGTCT 712
Query 767 ATATAACTTTTACGGGCTTGCCCAAGTC-CCCACGTCTTGTTGAGATTGGTGAGCATGTT 825
| ||||| |||| ||||||| || | | || | | || |||||||||||||||||||
Sbjct 713 ACATAACATTTAAGGGCTTGGACAGGGCTCCGA-TTGGTGATGAGATTGGTGAGCATGTT 771
Query 826 GAACGCAAAGCTATCATTAGAAGAGTCATCGATGATTCAGGATACTTGACTCTCCTTGGT 885
||||||||||||||| ||||||||||||| ||||| | | ||||| |||||||| |||
Sbjct 772 GAACGCAAAGCTATCGTTAGAAGAGTCATTGATGAGT-AT--TACTTTACTCTCCTGGGT 828
Query 886 AAGTTTTGGAGTGG 899
||||| || |||
Sbjct 829 GGGTTTTCGATTGG 842
> Ahg925674 jgi|Araly1|925674|scaffold_201235.1
Length=942
Score = 65.8 bits (35), Expect = 6e-10
Identities = 45/50 (90%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 811 ATTGGTGAGCATGTTGAACGCAAAGCTATCATTAGAAGAGTCATCGATGA 860
||||| |||||||||||||||||||||||||||| ||| | ||||| |||
Sbjct 757 ATTGGCGAGCATGTTGAACGCAAAGCTATCATTAAAAGTGGCATCGGTGA 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5