BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28510.1

Length=1032
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921906 jgi|Araly1|921906|scaffold_103187.1                        889    0.0  


> Ahg921906 jgi|Araly1|921906|scaffold_103187.1
Length=556

 Score =  889 bits (481),  Expect = 0.0
 Identities = 521/540 (96%), Gaps = 3/540 (1%)
 Strand=Plus/Plus

Query  160  AATGGTGTTGCCGTTGATGAAACTGGGCACACTCGCCGTCAAAACCATAAGTAAACCATT  219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  20   AATGGTGTTGCCGTTGATGAAACTGGGCACACTCGCCGTCAAAACCATAAGTAAACCATT  79

Query  220  GGCTAGTCAGCTCAAGCACCAAGCTAAGGTTCATCCCAAGTTTCGTCAATCTATCATCAA  279
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  80   GGCAAGTCAGCTCAAGCACCAAGCTAAGGTTCATCCCAAGTTTCGTCAATCTATCATCAA  139

Query  280  CTTCGCTCAGAGGAATCATCGAATCACTACGCAAATGCAAAGAAGGATATATGGTCATGC  339
            |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  140  CTTCGCTCAGAGAAATCATCGAATCACGACGCAAATGCAAAGACGGATATATGGTCATGC  199

Query  340  CACTGATGTAGAGATTCGTCCCTTAGATGAGGAAAAGGCTGTTCAAGCTGCTGTTGACCT  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  CACTGATGTAGAGATTCGTCCCTTAGATGAGGAAAAGGCTGTTCAAGCTGCTGTTGACCT  259

Query  400  CATTGGAGAGATCTTTCTCTTTGGGGTCGGTGGAGCTGTTGTTGTTTTTGAGGTGCAGAG  459
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  260  CATTGGAGAGATCTTTCTCTTTGGGGTCGGTGGAGCCGTTGTTGTTTTTGAGGTGCAGAG  319

Query  460  AAGTTCGCGGTCAGAAGCAAGAAAAGAGGAAGCACGTAAGCAAGAACTAGAGGAGTTGAG  519
             ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  320  GAGTTCACGGTCTGAGGCAAGAAAAGAGGAAGCACGTAAGCAAGAACTAGAGGATTTGAG  379

Query  520  AATAAAAGATGAAGAACTAGAAAAGCAAGTGGCAGATCTCAAGAGCAAGCTAGAGGAGCT  579
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  380  AATAAAAGATGAAGAACTAGAAAAGCAAGTGGCGGATCTCAAGAGCAAGCTAGAGGAGCT  439

Query  580  TGAACAACTTGCTAAGGCACGAGGACTGAGCGGTATTTTCCAGTTAAAACCACAGCCTGG  639
            ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||
Sbjct  440  TGAACAACTTGCTAAGGCACGCGGGTTGAGCGGTATTTTCCAGTTAAAACCACAGCCCGG  499

Query  640  TACTACCGCTAGTGGGAAACCAGACAAATCCAGTTGAatcatcatcatcatcatcTTATT  699
            |||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  500  TACTACGGCTAGTGGGAAACCAGACAAATCCAGTTGAATCATCATCA-C--CATCTTATT  556



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38389777419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5