BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28530.1 Length=1979 Score E Sequences producing significant alignments: (Bits) Value Ahg473074 jgi|Araly1|473074|fgenesh2_kg.1__3028__AT1G28530.1 2846 0.0 > Ahg473074 jgi|Araly1|473074|fgenesh2_kg.1__3028__AT1G28530.1 Length=1877 Score = 2846 bits (1541), Expect = 0.0 Identities = 1769/1880 (94%), Gaps = 12/1880 (1%) Strand=Plus/Plus Query 1 GTCAATGGCTTCCATTTCTACTG---c---ttcttcttcttcttcacttctcttcccttc 54 |||||||||||| ||||||||| | ||||||||||||||||||||| ||||| || Sbjct 1 GTCAATGGCTTCTGTTTCTACTGCTTCTTGTTCTTCTTCTTCTTCACTTCTATTCCCCTC 60 Query 55 tCGAAATTTCAAATCGATTCCATT-ACTTCCACAACAGAGAAGCTCTGTGTCTTTCGTTC 113 |||||||||| ||| ||||| || | |||||| | ||||||||||||||||||| ||| Sbjct 61 TCGAAATTTCGCATCTATTCCGTTGA-TTCCACTCCGGAGAAGCTCTGTGTCTTTCATTC 119 Query 114 GCTGTTTTTCTAAGAATTCTTCAACAGAGGAGGACATTCTCCGTTTCGTGGCCGAATCTG 173 || ||| |||||||||||| || || |||||||||||||||||||||||||| ||||| | Sbjct 120 GCGGTTATTCTAAGAATTCGTCTACGGAGGAGGACATTCTCCGTTTCGTGGCGGAATCCG 179 Query 174 ATGGGAAGGCACTTCCATGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTCAGTCTCG 233 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 180 ATGGGAAGGCACTTCCTTGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTTAGTCTCG 239 Query 234 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 299 Query 294 CCGATGACCATCTTCGTGAGAATGTTCCTGTTATGGTGGTCGAGACTGTTTTCCCCGGAG 353 ||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 300 CCGATGATCATCTTCGTGAAAATGTCCCTGTCATGGTGGTTGAGACTGTTTTTCCCGGAG 359 Query 354 GATCTGATCCTAAGGCTACTGTGTCAACCAGATTGTTCTTGCCTACTAAGAAAGTTAAAG 413 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || Sbjct 360 GATCTGATCCTAAAGCTACTGTGTCAACAAGATTGTTCTTGCCTACTAAGAAAGTTAGAG 419 Query 414 AGCGAGCT-AAAAGATTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGACTTGTCA 472 |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 420 AGCGAGCTAAAAAG-CTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGATTTGTCA 478 Query 473 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTGCGGCAGCTGTGGAACTTCCAG 532 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 479 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTACGGCAGCTGTGGAACTTTCAG 538 Query 533 CTAGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGATTTCGAAAACCCTCGAGAG 592 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 539 CTGGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGAATTCGAAAACCCTCGAGAG 598 Query 593 CAGGTTTCTACATCCTTCACTCTTAGCTCATCAGATGAACGGGTTATATCTGTTATTGCA 652 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 599 CAGGTTTCTACATCCTTCACTCTTAGCTCATCCGATGAACGGGTTATATCTGTTATTGCA 658 Query 653 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 718 Query 713 GGAAAAGCT-AAGTTTCCGTTTATGAAGTGGTTATCTAAACGCAGGAGGATTGCTTCAAG 771 |||||| || || ||||| ||| | ||||||||| ||||| || ||||||||||||||| Sbjct 719 GGAAAA-CTTAAATTTCCCTTTTTAAAGTGGTTAAATAAACACAAGAGGATTGCTTCAAG 777 Query 772 AGACTGCTCGGTTGTCCTGCATAAGTTATTTGATGATGAGCAGAATACCAAACTTTTGCT 831 ||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| Sbjct 778 AGACTGCTCTGTTGTCCTGCATAAGTTATTTGATGATGAGCCGAATACCAACCTCTTGCT 837 Query 832 TGAGTATTACCAGTCAAGGAAGGAAAATTTCAAACTTGCAGACACAAAGCAAAGAAGCCG 891 ||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 838 TGAATACTACCAGTCAAGGAAGGAAAATTTCAAACTTGAAGACACAAGGCAAAGAAGCCG 897 Query 892 GTGGTGGGACTTATCTGCCAATTCCAAGTTGGAAAAAATTGGTGGCCCTGGATTTAGTAG 951 ||||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||| Sbjct 898 GTGGTGGAACTTATCTGCCAATTCTAAATTGGAAAAAATCGGTGGCCCCGGATTTAGTAG 957 Query 952 TTGGGCAAGTGAATATTTACCCGCATATCGACTGGAAATGGATAGTACAATACTTGCAGA 1011 ||||||||||||||||||||| ||||||||||| ||||| |||| || |||||||||||| Sbjct 958 TTGGGCAAGTGAATATTTACCTGCATATCGACTAGAAATTGATACTATAATACTTGCAGA 1017 Query 1012 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAGAATAAGTGGGAAGTTCTTCTAACTCA 1071 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1018 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAAAATAAGTGGGAAGTTCTTCTAACTCA 1077 Query 1072 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGATATTTACTTTGAAGACACATATTCACT 1131 ||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||| Sbjct 1078 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGACATATACTTTGAAGATATATATTCACT 1137 Query 1132 TCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAATGAAAA 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1138 CCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAGTGAAAA 1197 Query 1192 GAAAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTTTTCTTCT 1251 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1198 GAGAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTCTTCTTCT 1257 Query 1252 TGCTGTGAGTGCTGCAGCCCAATTCTGTCTTCCTCAGAAAAGCGAGAGGAAGTATCCCGG 1311 ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| || Sbjct 1258 TGCTGTGAGTGCTGCGGCCCAATTCTGTCTTCCTCATAAAAGCGAGCGGAAGTATCCTGG 1317 Query 1312 AAAACGCCAAGAGATTTTATGGTCAGAGAGTGAATTGTTATCTCATCAATCTTCAGATTC 1371 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1318 AAAACGCCAAGATATTTTATGGTCAGAGAGTGAATTATTATCTCATCAATCTTCAGATTT 1377 Query 1372 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1437 Query 1432 GGTAGGGGAGATCACACTAGAAAGCAGCATAGGTGCCTGGATAGGGGAAGTACCTGACTA 1491 |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || Sbjct 1438 GGTAGGGGAGATCACACTGGAAAGTAGCATAGGTGCCTGGATTGGGGAAGTACCTGATTA 1497 Query 1492 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATTGTTACAAGCTCGTCTCT 1551 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1498 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATCGTTACAAGCTCTTCTCT 1557 Query 1552 TCTGGAAATACTCAATGAAGACGCAAAGGCATCTGCGCAAGATATCGCTACTTACCAGGT 1611 |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1558 TCTGGAAAAACTCAATGAAGACGCAAAGGCAGCTGCGCAAGATATCGCTACGTACCAGGT 1617 Query 1612 AGTTTTATCATCCGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1671 ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1618 CGTTCTATCAGCTGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1677 Query 1672 TCACTGGGCTGCTAATCCTTTAGCTAGAGAACTTTATGGAGGaaaaaaaCTCAAGCCTGG 1731 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1678 TCACTGGGCTGCTAATCCTTTAGCTAAAGAACTTTATGGTGGAAAAAAACTCAAGCCTGG 1737 Query 1732 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCCAAAAAAGTAGTTGTGTTGGAATTATT 1791 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1738 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCGAAAAAAGTAGTTGTGTTGGAATTGTT 1797 Query 1792 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAAGC 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1798 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAACC 1857 Query 1852 ATAGCGAAGTTCCTGTCTCT 1871 ||||| ||||||| |||||| Sbjct 1858 ATAGCCAAGTTCCCGTCTCT 1877 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74390248485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5