BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28530.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473074 jgi|Araly1|473074|fgenesh2_kg.1__3028__AT1G28530.1 2846 0.0
> Ahg473074 jgi|Araly1|473074|fgenesh2_kg.1__3028__AT1G28530.1
Length=1877
Score = 2846 bits (1541), Expect = 0.0
Identities = 1769/1880 (94%), Gaps = 12/1880 (1%)
Strand=Plus/Plus
Query 1 GTCAATGGCTTCCATTTCTACTG---c---ttcttcttcttcttcacttctcttcccttc 54
|||||||||||| ||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct 1 GTCAATGGCTTCTGTTTCTACTGCTTCTTGTTCTTCTTCTTCTTCACTTCTATTCCCCTC 60
Query 55 tCGAAATTTCAAATCGATTCCATT-ACTTCCACAACAGAGAAGCTCTGTGTCTTTCGTTC 113
|||||||||| ||| ||||| || | |||||| | ||||||||||||||||||| |||
Sbjct 61 TCGAAATTTCGCATCTATTCCGTTGA-TTCCACTCCGGAGAAGCTCTGTGTCTTTCATTC 119
Query 114 GCTGTTTTTCTAAGAATTCTTCAACAGAGGAGGACATTCTCCGTTTCGTGGCCGAATCTG 173
|| ||| |||||||||||| || || |||||||||||||||||||||||||| ||||| |
Sbjct 120 GCGGTTATTCTAAGAATTCGTCTACGGAGGAGGACATTCTCCGTTTCGTGGCGGAATCCG 179
Query 174 ATGGGAAGGCACTTCCATGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTCAGTCTCG 233
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 ATGGGAAGGCACTTCCTTGTGTGCGGACGTACGAGAATAATTCAGCTCGGCTTAGTCTCG 239
Query 234 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGGTACTGTTGCTTTTGATCAGGCTTTAACCGCTGCTGCTGCTGACGGTGGTGAAGCCG 299
Query 294 CCGATGACCATCTTCGTGAGAATGTTCCTGTTATGGTGGTCGAGACTGTTTTCCCCGGAG 353
||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 300 CCGATGATCATCTTCGTGAAAATGTCCCTGTCATGGTGGTTGAGACTGTTTTTCCCGGAG 359
Query 354 GATCTGATCCTAAGGCTACTGTGTCAACCAGATTGTTCTTGCCTACTAAGAAAGTTAAAG 413
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 360 GATCTGATCCTAAAGCTACTGTGTCAACAAGATTGTTCTTGCCTACTAAGAAAGTTAGAG 419
Query 414 AGCGAGCT-AAAAGATTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGACTTGTCA 472
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 AGCGAGCTAAAAAG-CTGCGGCGGTCTCTCTCTGAGGATCTTTCTAGTGGAGATTTGTCA 478
Query 473 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTGCGGCAGCTGTGGAACTTCCAG 532
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 479 AAGAACATACTTGCGATGACTTTTAGGCAAGTTGTTTTACGGCAGCTGTGGAACTTTCAG 538
Query 533 CTAGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGATTTCGAAAACCCTCGAGAG 592
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 CTGGTGTTATTTGCACCTGGAGCTGAAAGAGAAATGGGAGAATTCGAAAACCCTCGAGAG 598
Query 593 CAGGTTTCTACATCCTTCACTCTTAGCTCATCAGATGAACGGGTTATATCTGTTATTGCA 652
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 CAGGTTTCTACATCCTTCACTCTTAGCTCATCCGATGAACGGGTTATATCTGTTATTGCA 658
Query 653 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAGTTATATGCATCTCCGCTCTTCAAAGCACCGAGAAGCATTTCCTCGATGATTATCTG 718
Query 713 GGAAAAGCT-AAGTTTCCGTTTATGAAGTGGTTATCTAAACGCAGGAGGATTGCTTCAAG 771
|||||| || || ||||| ||| | ||||||||| ||||| || |||||||||||||||
Sbjct 719 GGAAAA-CTTAAATTTCCCTTTTTAAAGTGGTTAAATAAACACAAGAGGATTGCTTCAAG 777
Query 772 AGACTGCTCGGTTGTCCTGCATAAGTTATTTGATGATGAGCAGAATACCAAACTTTTGCT 831
||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 778 AGACTGCTCTGTTGTCCTGCATAAGTTATTTGATGATGAGCCGAATACCAACCTCTTGCT 837
Query 832 TGAGTATTACCAGTCAAGGAAGGAAAATTTCAAACTTGCAGACACAAAGCAAAGAAGCCG 891
||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 838 TGAATACTACCAGTCAAGGAAGGAAAATTTCAAACTTGAAGACACAAGGCAAAGAAGCCG 897
Query 892 GTGGTGGGACTTATCTGCCAATTCCAAGTTGGAAAAAATTGGTGGCCCTGGATTTAGTAG 951
||||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||
Sbjct 898 GTGGTGGAACTTATCTGCCAATTCTAAATTGGAAAAAATCGGTGGCCCCGGATTTAGTAG 957
Query 952 TTGGGCAAGTGAATATTTACCCGCATATCGACTGGAAATGGATAGTACAATACTTGCAGA 1011
||||||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||||
Sbjct 958 TTGGGCAAGTGAATATTTACCTGCATATCGACTAGAAATTGATACTATAATACTTGCAGA 1017
Query 1012 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAGAATAAGTGGGAAGTTCTTCTAACTCA 1071
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 CTTAAAGCTTGAGGGCTGGAGAAAGTCCAGTGAAAATAAGTGGGAAGTTCTTCTAACTCA 1077
Query 1072 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGATATTTACTTTGAAGACACATATTCACT 1131
||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||
Sbjct 1078 CTCCCAAATGGTTGGATTAGCTGAAGCATTGGACATATACTTTGAAGATATATATTCACT 1137
Query 1132 TCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAATGAAAA 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 CCCCAGGAAACAGCTACCATGTGATGTTCCTGGAAATTATGCAAACTTACCCAGTGAAAA 1197
Query 1192 GAAAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTTTTCTTCT 1251
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 GAGAGGATTGTCTTTGTTGAAATTCATATCTGTCACCATGGCCAGTGGAATTCTTCTTCT 1257
Query 1252 TGCTGTGAGTGCTGCAGCCCAATTCTGTCTTCCTCAGAAAAGCGAGAGGAAGTATCCCGG 1311
||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1258 TGCTGTGAGTGCTGCGGCCCAATTCTGTCTTCCTCATAAAAGCGAGCGGAAGTATCCTGG 1317
Query 1312 AAAACGCCAAGAGATTTTATGGTCAGAGAGTGAATTGTTATCTCATCAATCTTCAGATTC 1371
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 AAAACGCCAAGATATTTTATGGTCAGAGAGTGAATTATTATCTCATCAATCTTCAGATTT 1377
Query 1372 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTCTGAGTTGGATTCATTCTGCGGATTACTCGTCAACAAGCTCAAGGATGCCTACAGCTG 1437
Query 1432 GGTAGGGGAGATCACACTAGAAAGCAGCATAGGTGCCTGGATAGGGGAAGTACCTGACTA 1491
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1438 GGTAGGGGAGATCACACTGGAAAGTAGCATAGGTGCCTGGATTGGGGAAGTACCTGATTA 1497
Query 1492 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATTGTTACAAGCTCGTCTCT 1551
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1498 CTTGAAAGAAACCAGCAGAGCTAAGTCTGTTGAAGATCACATCGTTACAAGCTCTTCTCT 1557
Query 1552 TCTGGAAATACTCAATGAAGACGCAAAGGCATCTGCGCAAGATATCGCTACTTACCAGGT 1611
|||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1558 TCTGGAAAAACTCAATGAAGACGCAAAGGCAGCTGCGCAAGATATCGCTACGTACCAGGT 1617
Query 1612 AGTTTTATCATCCGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1671
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CGTTCTATCAGCTGAAGGTAAAATCATAGGGTTCCAACCGACAAGCCGGGTGGCTGTGAA 1677
Query 1672 TCACTGGGCTGCTAATCCTTTAGCTAGAGAACTTTATGGAGGaaaaaaaCTCAAGCCTGG 1731
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1678 TCACTGGGCTGCTAATCCTTTAGCTAAAGAACTTTATGGTGGAAAAAAACTCAAGCCTGG 1737
Query 1732 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCCAAAAAAGTAGTTGTGTTGGAATTATT 1791
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1738 GCTGATTGAGCCTGGTCTTAAGAGTCACCCTCCGAAAAAAGTAGTTGTGTTGGAATTGTT 1797
Query 1792 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAAGC 1851
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1798 AATGTCTGTGAATTCAGATCGTCCTTTTGCATTGGTCAGACCATTATTGCCACAATAACC 1857
Query 1852 ATAGCGAAGTTCCTGTCTCT 1871
||||| ||||||| ||||||
Sbjct 1858 ATAGCCAAGTTCCCGTCTCT 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5