BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28540.1
Length=602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473075 jgi|Araly1|473075|fgenesh2_kg.1__3029__AT1G28540.1 763 0.0
> Ahg473075 jgi|Araly1|473075|fgenesh2_kg.1__3029__AT1G28540.1
Length=582
Score = 763 bits (413), Expect = 0.0
Identities = 535/591 (91%), Gaps = 19/591 (3%)
Strand=Plus/Plus
Query 9 AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAACAAC 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAAC-AC 59
Query 69 AATACTTCTTCGTCGGCGAAAAAACCGACGCCGGAGATCGGATCGGGTTCGGGTAAAA-G 127
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 60 --CACTTCTTCGTCGGCGAAGAAACCGACGCCGGAGATTGGATCGGGTTCGGGTAAAAGG 117
Query 128 -----GTATTATAACCCGCCTGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA 182
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATACCGTATTATAACCCGCCCGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA 177
Query 183 TGGAAATTCGCGATTCGGCAATACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT 242
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGGAAATTCGCCATTCGGCAGTACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT 237
Query 243 CTAGCTGGAGGTTTTTTCTTCGGACTCGGTTGGATCATCAAGGGCTCTAATCCTCTTCCT 302
|| || ||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 CTCGCCGGAGGAGTCTTCTTCGGACTCGGTTGGATCATCAAGGGATCTAATCCTCTTCCT 297
Query 303 TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCCGTATCTGCGTTTTT 362
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCAATATCTGCGTTTTT 357
Query 363 TCTCTGATGGG-GAAAAAGGA-GCGCGTCAACA-ATGGAACATCTTCATGAACATT-CAG 418
| || || | | | || | ||| ||||||| | |||||||||||||| ||||| | |
Sbjct 358 T-TCGGAAAGCAGCATGAG-ACGCGAGTCAACAGA-GGAACATCTTCATGTACATTAC-G 413
Query 419 AAGTACATCGATCGGTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAAAGAGTGGAAC 478
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 414 AAGTCCATCGATCGTTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAGAGAGTAGAAA 473
Query 479 CGAAACTaaaaaaaCTTTTGAGTGTGAACTTTGTTTGTCTGATAATTCCAAGAATGTATA 538
|||||| ||||||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 474 CGAAAC-AAAAAAA-TCTTGAGTGTGAACCTTGTTTGTCTGATAATTCCAGGAATGTATA 531
Query 539 CAAATTTGCAGGAAAATATTGAAAAATGTTAGTGTTTAGTAATAAAAGTAC 589
|||||||||||||||||| |||||||||||| |||| | | |||||| |||
Sbjct 532 CAAATTTGCAGGAAAATAGTGAAAAATGTTAATGTTGAATTATAAAAATAC 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22053930442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5