BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28540.1 Length=602 Score E Sequences producing significant alignments: (Bits) Value Ahg473075 jgi|Araly1|473075|fgenesh2_kg.1__3029__AT1G28540.1 763 0.0 > Ahg473075 jgi|Araly1|473075|fgenesh2_kg.1__3029__AT1G28540.1 Length=582 Score = 763 bits (413), Expect = 0.0 Identities = 535/591 (91%), Gaps = 19/591 (3%) Strand=Plus/Plus Query 9 AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAACAAC 68 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 AAGAAAAGAATCTAGACGACGACAATGGCGGAGAAGAGCCAAATCCCTGATAACAAC-AC 59 Query 69 AATACTTCTTCGTCGGCGAAAAAACCGACGCCGGAGATCGGATCGGGTTCGGGTAAAA-G 127 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | Sbjct 60 --CACTTCTTCGTCGGCGAAGAAACCGACGCCGGAGATTGGATCGGGTTCGGGTAAAAGG 117 Query 128 -----GTATTATAACCCGCCTGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA 182 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 118 ATACCGTATTATAACCCGCCCGAGTCGGTGAATCCGGATCAGGCGACGTTAAGGGAGCAA 177 Query 183 TGGAAATTCGCGATTCGGCAATACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT 242 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 178 TGGAAATTCGCCATTCGGCAGTACAGTAAATGGTACTCACACGCTTGGGGAACTGCGATT 237 Query 243 CTAGCTGGAGGTTTTTTCTTCGGACTCGGTTGGATCATCAAGGGCTCTAATCCTCTTCCT 302 || || ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 238 CTCGCCGGAGGAGTCTTCTTCGGACTCGGTTGGATCATCAAGGGATCTAATCCTCTTCCT 297 Query 303 TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCCGTATCTGCGTTTTT 362 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 298 TCTCTTCAATCGAGTTCTAAGCCTCGCGATGAAGAAAAATGATTCAATATCTGCGTTTTT 357 Query 363 TCTCTGATGGG-GAAAAAGGA-GCGCGTCAACA-ATGGAACATCTTCATGAACATT-CAG 418 | || || | | | || | ||| ||||||| | |||||||||||||| ||||| | | Sbjct 358 T-TCGGAAAGCAGCATGAG-ACGCGAGTCAACAGA-GGAACATCTTCATGTACATTAC-G 413 Query 419 AAGTACATCGATCGGTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAAAGAGTGGAAC 478 |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 414 AAGTCCATCGATCGTTAGAAGCAGAGAGAGCACGAAGCAAGCGATTGTAGAGAGTAGAAA 473 Query 479 CGAAACTaaaaaaaCTTTTGAGTGTGAACTTTGTTTGTCTGATAATTCCAAGAATGTATA 538 |||||| ||||||| | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 474 CGAAAC-AAAAAAA-TCTTGAGTGTGAACCTTGTTTGTCTGATAATTCCAGGAATGTATA 531 Query 539 CAAATTTGCAGGAAAATATTGAAAAATGTTAGTGTTTAGTAATAAAAGTAC 589 |||||||||||||||||| |||||||||||| |||| | | |||||| ||| Sbjct 532 CAAATTTGCAGGAAAATAGTGAAAAATGTTAATGTTGAATTATAAAAATAC 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22053930442 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5