BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28550.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912687 jgi|Araly1|912687|Al_scaffold_0001_2941 1048 0.0
Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871 715 0.0
> Ahg912687 jgi|Araly1|912687|Al_scaffold_0001_2941
Length=657
Score = 1048 bits (567), Expect = 0.0
Identities = 627/657 (95%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCATATAGAGCAGAAGACGATTATGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGCATATAGAGCAGAAGACGATTACGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
Query 61 GATTCCGGCGTCGGGAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCCGGCGTCGGAAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
Query 121 GACTCACGTGCAACCATCGGTGTCGAATTCGCCACACGAAGCATCCAATGCGATGATAAG 180
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 GACTCACGTGCGACCATCGGTGTCGAATTCGCCACCCGTAGCATCCAATGCGATGATAAG 180
Query 181 ATCGTCAAGGCTCAAATATGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGAGC 240
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGTTAAGGCTCAAATCTGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGAGC 240
Query 241 GCTTATTACCGAGGAGCTGTTGGTGCATTGCTTGTTTATGACGTGACGCGCCACGTGACA 300
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 GCTTATTACCGAGGAGCCGTTGGTGCATTGCTTGTTTATGACGTGACGCGTCACGTAACT 300
Query 301 TTCGAGAATGTTGAGAGATGGCTAAAGGAGCTTAGGGACCACACGGACGCAAACATTGTG 360
|||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 301 TTCGAGAACGTCGAGAGATGGCTAAAGGAGCTAAGGGACCACACGGACGCAAATATTGTT 360
Query 361 ATCATGCTCGTTGGCAACAAAGCTGATCTTCGTCACCTTCGAGCCATCTCAACCGAAGAA 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ATTATGCTCGTTGGTAACAAAGCTGATCTTCGTCACCTTCGAGCCATCTCAACTGAAGAA 420
Query 421 GCTAAAGCTTTTGCAGAGAGGGAGAATACCTTTTTCATGGAGACTTCTGCACTTGAAGCT 480
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GCTAAGGCTTTTGCAGAGAGAGAGAATACCTTTTTCATGGAGACATCTGCACTTGAAGCA 480
Query 481 GTGAATGTTGATAATGCTTTCACTGAAGTTCTCACTCAGATTTACAGAGTTGTTAGCAAG 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGAATGTTGATAATGCTTTCACCGAAGTTCTCACTCAGATTTACAGAGTTGTTAGCAAG 540
Query 541 AAGGCTCTTGAAGCTGGAGATGATCCAACCACTGCTTTGCCTAAAGGACAGATGATTAAT 600
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 541 AAGGCTCTTGAAGCTGGAGATGATCCAACCACCGCTTTGCCTAAAGGACAAATGATTAAT 600
Query 601 GTTGGAGGCCGAGATGATATCTCAGCCGTTAAAAAACCTGGTTGCTGCTCTGCATAG 657
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 601 GTTGGAAGCCGAGATGATATCTCAGCCGTTAAGAAACCCGGTTGCTGCTCTGCATAG 657
> Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871
Length=657
Score = 715 bits (387), Expect = 0.0
Identities = 567/654 (87%), Gaps = 12/654 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGCATATAGAGCAGAAGACGATTATGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
|||||| |||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
Query 61 GATTCCGGCGTCGGGAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
|||||||| ||||||||||| ||| || |||| || ||||||||||| ||||| ||||||
Sbjct 61 GATTCCGGTGTCGGGAAATCAAATCTGCTATCCCGATTCACCAGAAACGATTTTAGCCAC 120
Query 121 GACTCACG-TGCAACCATCGGTGTCGAATTCGCCACACGAAGCATCCAA-TGCGATGATA 178
|||||||| | | ||||||||||| || || |||||||| ||||||||| || || || |
Sbjct 121 GACTCACGCT-CGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTG-GACGACA 178
Query 179 AGATCGTCAAGGCTCAAATATGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGA 238
|||| ||||| ||||| |||||||| || || || ||||||||||| ||||||||||| |
Sbjct 179 AGATTGTCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTA 238
Query 239 GCGCTTATTACCGAGGAGCTGTTGGTGCATTGCTTGTTTATGACGTGACGCGCCACGTGA 298
|||| || || |||||||| |||||||| || || || || |||||||| || |||||||
Sbjct 239 GCGCGTACTATCGAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGA 298
Query 299 CATTCGAGAATGTTGAGAGATGGCTAAAGGAGCTTAGGGACCACACGGACGCAAACATTG 358
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 299 CATTCGAGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTG 358
Query 359 TGATCATGCTCGTTGGCAACAAAGCTGATCTTCG--TCACCTTCGAGCCATCTCAACCGA 416
|||| |||||||| || |||||||||||| || | |||||||||||||||||| || ||
Sbjct 359 TGATAATGCTCGTAGGTAACAAAGCTGAT-TT-GAATCACCTTCGAGCCATCTCTACGGA 416
Query 417 AGAAGCT-AAAGCTTTTGCAGAGAGGGAGAATACCTTT-TTCATGGAGACTTCTGCACTT 474
||||| | |||| |||||||||||| ||||| | |||| |||||||||||||| |||||
Sbjct 417 AGAAG-TGAAAGATTTTGCAGAGAGAGAGAACA-CTTTCTTCATGGAGACTTCAGCACTC 474
Query 475 GAAGCTGTGAATGTTGATAATGCTTTCACTGAAGTTCTCACTCAGATTTACAGAGTTGTT 534
|||||| | ||||| || || |||||||| || ||||| ||||||||||||||||| |||
Sbjct 475 GAAGCTATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTT 534
Query 535 AGCAAGAAGGCTCTTGAAGCTGGAGATGATCCAACCACTGCTTTGCCTAAAGGACAGATG 594
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 AGCAAGAAGGCTCTTGATGCTGGAGATGATCCTACCACTGCTTTGCCTAAAGGACAGATG 594
Query 595 ATTAATGTTGGAGGCCGAGATGATATCTCAGCCGTTAAAAAACCTGGTTGCTGC 648
|||||||| ||| || |||||||| | |||||||| || ||| | |||||||||
Sbjct 595 ATTAATGTAGGAAGCAGAGATGATGTTTCAGCCGTCAAGAAATCGGGTTGCTGC 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5