BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28560.2
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912688 jgi|Araly1|912688|Al_scaffold_0001_2942 1663 0.0
> Ahg912688 jgi|Araly1|912688|Al_scaffold_0001_2942
Length=1128
Score = 1663 bits (900), Expect = 0.0
Identities = 1000/1049 (95%), Gaps = 4/1049 (0%)
Strand=Plus/Plus
Query 668 TGAAAATCCATTAGCTGGGAGGGCAAAAAGGAAGAGGACAGTAAAGAATACCGAGGTAAA 727
||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 78 TGAAAATCCATCAGCTGGGAGGGCAAAGAGGAAGAGGACAGTAAATAATACTGAGGTAAA 137
Query 728 GAAGAGGACACTAAAGAATACTGAGGTAATGAAGATGACAGAAAAGAAGACTGAGGAAGC 787
|||||||||| |||||| |||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 138 GAAGAGGACAGAAAAGAAGACTGAGTTAAAGAAGAGGACAGAAAAGAAGACTGAGGAAGC 197
Query 788 TTATCTTGTGAAAGTCGAGCAGCTTGCTAAACTCAAACAAAAGCAGGAGGAGGATAAAGC 847
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TTATCTTGCCAAAGTCGAGCAGCTTGCTAAACTCAAACAAAAGCAGGAGGAGGATAAAGC 257
Query 848 AGCTGTGACACTGCACTGCTTCAGCAAGACCAGTGAGACTGGTAAAGATGTAGTTGCACC 907
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 258 AGCTGTGACACTGCACTGCTTCAGCAAGACTTGTGAGACTGGTAAAGATGTAGCTGCACC 317
Query 908 TCCAGAAGGTTTTGAGCAGATGCAATCTCTTAGGTTCATAGATAATAATTACACGAAGTT 967
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 318 TCCAGAAGGCTTTGAGCAGATGCAATCTCTTAGGTTCATAGATAATAATTACACGCAGGT 377
Query 968 GAAGCCATCTGACATCCAGGGACAAGTGGATCCGCTATTTCCTGAAGTCATTTTGTGTGT 1027
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 378 GAAGCCATCGGACATCCAGGGACAAGTGGATCCGCTATTTCCTGAAGTCATTTTGTGTCT 437
Query 1028 TGAGATTTATAACAGTCGCAAGGTTAAGACCCAAGAATTTTTGGTTCTAGGACGTCAAAT 1087
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 438 TGAGATTTATAACAGTCGCAAGGTTAAGATCCAAGAATTTTTGGTTCTAGGACGTCAAAT 497
Query 1088 GTTGACTGAGTTGAAGGACAATATTCACTGTGCTACAGACCAGGTGATGCAAAAGGCTGG 1147
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 498 GTTGACTGAATTGAAGGACAACATTCACTGTGCTACAGACCAGGTGATGAAAAAGGCTGG 557
Query 1148 AAAGTATGATCCCTCTGGATACTTCCTCATAGAAGATGTCTTTCACAATGATTTAAGGAA 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GAAGTATGATCCCTCTGGATACTTCCTCATAGAAGATGTCTTTCACAATGATTTAAGGAA 617
Query 1208 TCCCTCGGCTAAAGATTACAGCTATCCTATTTTAGATTGGCTTTGGAACTCGAAAGATGA 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCCCTCGGCTAAAGATTACAGCTATCCTATTTTAGATTGGCTTTGGAACTCGAAAGATGA 677
Query 1268 AGCTCTTAAAAAATGGGAATGTGTTTTAACCGGCGAATTACAGAAAAAGCAGAAACTGGT 1327
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 678 GGCTCTTAAAAAATGGGAATGCGTTTTAACCGGCGAATTACATAAAAAGCAGAAACTGGT 737
Query 1328 TCTAGGTGAAGCGAAATCTGTGGATTTACCTCGTTACAGAACTGCAGACATGCAGAGTAC 1387
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 738 TCTAGGTGAAGCGAAATCTGTGGATTTACCTCGTTACGGAACTGCAGACATGCAGAGTAC 797
Query 1388 ACACTTCTGTGATATAAGATTCAGAGTCGGAGCTAGTTATGTCTATTGTCATCAGGGAGA 1447
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 798 ACGCTTCTGTGATATAAGATTCAGAGTCGGAGCTAATTATCTCTATTGTCATCAGGGAGA 857
Query 1448 TTGCAAGCACACGATTGTGATTCGAGACATGAGGATGAGTCATCCAGAGGACGTTCAGAA 1507
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 858 TTGCAAGCACACGATTGTGATTCGGGACATGAGGCTGAGTCATCCAGAGGACGTTCAGAG 917
Query 1508 CAGAGCAGCTTACCCGATCATGTTCTGG-CCGAAACGTAGGATTCAGAAATGCGGTGTTT 1566
||||| ||||||||||||||||| | | |||||||||||| ||||||||||||||||||
Sbjct 918 TAGAGCGGCTTACCCGATCATGTT-TCGACCGAAACGTAGGCTTCAGAAATGCGGTGTTT 976
Query 1567 GTAAGATAAAGAGAGCTTCAAAGGTTGCAGTGGATGACAAGTGGGC-AAGCGAGAACAGT 1625
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 977 GCAAGATAAAGAGAGCTTCAAAGGTTGCAGTGGATGACAAGTGGGCCAA-CGAGAACACT 1035
Query 1626 AGCTATTTCTGTGATGTTTGTTTTGAGCTTCTACACTCAGAGGAAGGCCCACTTAACTGT 1685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1036 TGCTATTTCTGTGATGTTTGTTTTGAGCTTCTACACTCAGAGGAAGGCCCACTTAACCGT 1095
Query 1686 GACTTCCCAGTGTTTGATTATGTGCATGA 1714
||||||||||||| |||||||||| ||||
Sbjct 1096 GACTTCCCAGTGTATGATTATGTGTATGA 1124
Score = 121 bits (65), Expect = 2e-26
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 558 ATGGCTATGAAGGAAGCCTTTCCGGAAGATTACCTTTCCCAAGAGGAGCTCGAACCATCT 617
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1 ATGGCTATGAAGGAAGCCTTTCCGGAAGATTACCTTTCCCAAAAGGAGCTCGAACAATCT 60
Query 618 TTAAACGTTTCTCATCA 634
||| ||| |||||||||
Sbjct 61 TTAGACGCTTCTCATCA 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5