BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28580.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1 1912 0.0
Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 972 0.0
Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 824 0.0
> Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1
Length=1275
Score = 1912 bits (1035), Expect = 0.0
Identities = 1197/1277 (94%), Gaps = 3/1277 (0%)
Strand=Plus/Plus
Query 21 AAAAAAGGGATCTCGACGGAGACCAACCTTCAGCTCTCTGGCAATGGCGTATCCCGGTTC 80
|||||| |||||||||||||||||||||| | |||||||||||||||||| ||| | ||
Sbjct 1 AAAAAA-GGATCTCGACGGAGACCAACCTCCGGCTCTCTGGCAATGGCGTCTCCAGATTA 59
Query 81 GCCTATCTTGATGAAGCTCCTCGTCTTCATCTTTTTATCAACTTTTGTAGTCACTAACGT 140
|| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 60 TACTTTCTTGATGAAGCTCCTCATCTTCATCTTTTTATCAACTTTTATTGTCACTAACGT 119
Query 141 GAGCTCGGAAACTAAGTGCCGGGAGTTCAAATCGATCATCAGTTTCGGAGATTCCATTGC 200
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 120 CAGCTCGGAAACTAAGTGCCGGGAGTTCAGATCGATCATCAGTTTCGGAGATTCGATTGC 179
Query 201 CGACACTGGAAACTTGCTTGGCCTCTCAGATCCTAAAGATCTTCCTCACATGGCGTTTCC 260
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CGACACTGGAAACTTGCTTGGCCTCTCAGATCCTAACGATCTTCCTCACATGGCGTTTCC 239
Query 261 ACCGTATGGAGAGAACTTCTTCCACCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCAT 320
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 ACCGTACGGAGAGACCTTCTTCCACCACCCAACTGGTCGTTTCTCCAATGGCCGCCTCAT 299
Query 321 CATTGATTTCATCGCTGAATTCTTGGGTTTACCGCTTGTGCCTCCATTCTATGGATCTCA 380
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 300 TATTGATTTCATCGCTGAATTCTTGGGTTTACCGCTTGTGCCTCCTTTTTATGGATCTCA 359
Query 381 TAATGCAAACTTTGAAAAGGGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACG 440
|||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||
Sbjct 360 AAATGCAAACTTTGAGAAGGGAGTTAACTTCGCGGTAGGGGGAGCAACGGCACTGGAACG 419
Query 441 TTCCTTTCTTGAAGACAGAGGAATTCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCA 500
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 420 TTCCTTTCTTGAAGAGAGAGGAATTCATTTTCCTTACACCAATGTCAGTTTAGGCGTTCA 479
Query 501 GCTTAATAGCTTCAAGGAGAGTTTACCTAGCATATGTGGCTCTCCTTCAGACTGTAGAGA 560
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 480 GCTTAATAGCTTCAAGGAGAGTTTGCCTAGCATATGTGGCTCTCCTTCAGACTGCAGAGA 539
Query 561 TATGATAGAAAATGCTTTGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGC 620
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 540 TATGATAGAAAATGCTTTGATTCTCATGGGAGAAATTGGAGGGAATGATTATAATTACGC 599
Query 621 GTTCTTCGTGGACAAAGGCATTGAAGAGATCAAGGAGCTGATGCCCCTGGTGATCACTAC 680
|| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 600 ATTTTTCGTGGACAAAAGCATTGAAGAGATAAAGGAGCTGACGCCCCTGGTGATCACTAC 659
Query 681 TATTTCTTCTGCAATCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGG 740
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 660 TATTTCTTCTGCAATCACGGAGTTGATCAGTATGGGGGGAAGAACATTTCTGGTGCCCGG 719
Query 741 AGAGTTCCCAGTCGGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGA 800
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AGAGTTCCCAGTTGGATGCTCAGTATTCTATTTGACATCACATCAAACATCAAACATGGA 779
Query 801 AGAATACGATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGG 860
|||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| ||
Sbjct 780 AGAATACGATCCTTTAACCGGATGTTTGAAATGGCTGAATAACTTTGGAGAAAACCACGG 839
Query 861 TGAGCAGCTTAGAGCAGAACTCAACAGACTCCAGAAGTTGTACCCTCATGTTAACATCAT 920
||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 840 CGAGCAGCTTCGAGCAGAACTCAAGAGACTTCAGAAGTTGTACCCTCATGTCAACATCAT 899
Query 921 ATACGCTGACTACTACAACGCGCTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATT 980
||| ||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||
Sbjct 900 ATATGCTGACTACTACAACGCTCTGTTGCGCCTTTACCAAGAACCAGCCAAATTCGGATT 959
Query 981 CATGAACAGACCTTTGTCCGCTTGTTGCGGCGCAGGAGGACCGTACAACTATACCGTAGG 1040
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CATGAACAGACCCTTGTCCGCTTGTTGCGGCTCAGGAGGACCGTACAACTATACCGTAGG 1019
Query 1041 TAGGAAATGTGGGACTGATATAGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGGCTTG 1100
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TAGAAAATGTGGGACTGATATAGTTGAAAGTTGTAATGATCCTTCAAAGTATGTGGCTTG 1079
Query 1101 GGACGGTGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTATACTAAATGG 1160
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1080 GGACGGCGTTCATCTGACTGAGGCTGCCTACAGATTGATGGCTGAGGGTATACTAAAGGG 1139
Query 1161 ACCGTATGCGATTCCTCCTTTTGATTGGTCTTGCCGTAGCTCTGGAGTTAAGAACAGTGG 1220
||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1140 ACCCTATGCGATTCCTCCTTTTGATTGGTCTTGCCTTAGCTCTGGAATTAAGAAGAGTGG 1199
Query 1221 GTCATCTGACACATAGAATTCTTTGATGAGA-AACTGATACAAGTTGGTCAAAAAATTGA 1279
|||||||||| |||||||||||| ||||| | |||||| | |||||||||||||||||||
Sbjct 1200 GTCATCTGACGCATAGAATTCTTAGATGA-ACAACTGAGATAAGTTGGTCAAAAAATTGA 1258
Query 1280 GAAAAGGATACTGATAA 1296
|| ||||||||||||||
Sbjct 1259 GACAAGGATACTGATAA 1275
> Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945
Length=2427
Score = 972 bits (526), Expect = 0.0
Identities = 940/1133 (83%), Gaps = 56/1133 (5%)
Strand=Plus/Plus
Query 110 TCTTTTTATCAACTTTTGTAGTCACTAACGTGAGCTCGGAAACTAAGTGCCGGGAGTTCA 169
||||||| || ||| | | ||||||| ||||||||||||||| ||||||| | ||||
Sbjct 30 TCTTTTT-TCTACTCTACTTGTCACTATCGTGAGCTCGGAAACGCCGTGCCGGAATTTCA 88
Query 170 AATCGATCATCAGTTTCGGAGATTCCATTGCCGACACTGGAAACTTGCTTGGCCTCTC-A 228
| ||||||||||||||||| ||||| ||||||||||| || |||||| | || ||||| |
Sbjct 89 AGTCGATCATCAGTTTCGGTGATTCGATTGCCGACACCGGGAACTTGGTCGGTCTCTCTA 148
Query 229 GATCCTAA-AGATCTTCC--TCACATGGCGTTTCCACCGTATGGAGAGAAC-TTCTTCCA 284
||| ||| | ||||||| | || | ||||||||||| || ||||| ||| ||||||||
Sbjct 149 -ATCGTAACA-ATCTTCCTGTGAC-T-GCGTTTCCACCATACGGAGA-AACTTTCTTCCA 203
Query 285 CCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCATCATTGA-TTTCATCGCTGAATTCT 343
||| ||||| || |||| || | |||||||| ||||||| || ||| ||||||||||| |
Sbjct 204 CCAACCAACCGGCCGTTCCTGCGACGGCCGCATCATCATGGACTTT-ATCGCTGAATT-T 261
Query 344 -TGGG-TTTACCGCT-TGTGCCTCCATT-CTATGGATCTCATAATGCAAACTTTGAAAAG 399
|||| || || | ||||||||| || || ||||||| | |||| ||||||||| |||
Sbjct 262 GTGGGCCTT-CC-TTATGTGCCTCC-TTACTTTGGATCTAAAAATGGAAACTTTGATAAG 318
Query 400 GGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACGTTCCTTTCT--TGAAGACA 457
|| |||||||||||||||| |||||||| || ||||| |||||||||| ||||| |
Sbjct 319 GGCGTTAATTTCGCGGTAGCTGGAGCAACGGCACTGGAAAGTTCCTTTCTCATGAAG--A 376
Query 458 GAGGAATTCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCAGCTTAATAGCTTCAAGG 517
|||||||||| ||| |||| || || |||||||| ||||||||||| |||||||||
Sbjct 377 GAGGAATTCA---TCCACACACCAACGTTAGTTTAGGAGTTCAGCTTAAGAGCTTCAAGA 433
Query 518 AGAGTTTACCTAGCATATGTGGCTCTCCTTCAGACTGTAGAGATATGATAGAAAATGCTT 577
| |||||||| | |||||||||||||| ||||| |||||||||||||| | ||||||||
Sbjct 434 AAAGTTTACCAAATATATGTGGCTCTCCATCAGATTGTAGAGATATGATTGGAAATGCTT 493
Query 578 TGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGCGTTCTTCG-TGGACAAA 636
||||||||||||| || |||||||||||||| ||||| | | | ||||||| | ||||
Sbjct 494 TGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCGAACG-CAAA 552
Query 637 GGCATTGAA-G-AGATCAAGGAGCTGATGCCCCTGGTGATCACTACTATTTCTTCTGCAA 694
|| | || | || | || |||||| | || | |||||| ||||||||||||||||||
Sbjct 553 CCCA-TCAAGGAAG-TTAAAGAGCTGGTTCCGTTTGTGATCGCTACTATTTCTTCTGCAA 610
Query 695 TCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGGAGAGTTCCC-AGTC 753
||||||||||||| ||||||||||||| ||| ||| | ||||||||||||||||| | ||
Sbjct 611 TCACGGAGTTGATTGGTATGGGGGGAAAAACCTTTCTAGTGCCCGGAGAGTTCCCTA-TC 669
Query 754 GGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGAAGAATACGATCCT 813
|||||||||||| | |||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 670 GGATGCTCAGTAGTCTATTTGACATTATATCAAACATCAAACAAGGAAGAATACGATCCT 729
Query 814 TTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGGTGAGCAGCTTA-G 872
||||||||||||||||||||||||||||||||||| ||| |||| | |||| |||| |
Sbjct 730 TTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGCGAATACCACAGCCAGCAACTTAAG 789
Query 873 AGCAGAACTCAACAGACTCCAG-AAGTTGTACCCTCATGTTAACATCATATACGCTGACT 931
| | |||||||||||||| || ||| | |||||||||| |||||||||||||||||||
Sbjct 790 A-CGGAACTCAACAGACTT-AGGAAGCTCAACCCTCATGTCAACATCATATACGCTGACT 847
Query 932 ACTACAACGCGCTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATTCATGAACAGAC 991
|||||||||| || || | ||||| | ||||||||||||||||||| |||||| ||||||
Sbjct 848 ACTACAACGCTCTCTTGCGCCTTTTTAAAGAACCAGCCAAATTCGGGTTCATGGACAGAC 907
Query 992 CTTTGTCC-GCTTGTTGCGGCGCAGGAGGACCGTACAACTAT-ACCGT-AGGTAGGAAAT 1048
| ||| | ||||||||||| ||||||||||||||||| | | | | | ||| ||||
Sbjct 908 CCTTG-CATGCTTGTTGCGGTATAGGAGGACCGTACAACT-TCAACTTCAC-TAGAAAAT 964
Query 1049 GTGGGACTGATAT-AGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGG-CTTGGGACGG 1106
|||||| || || ||||||| |||| | ||||||||||||||||||| || |||||||
Sbjct 965 GTGGGAGTG-TAGGAGTTGAATCTTGTAAGGATCCTTCAAAGTATGTGGGCT-GGGACGG 1022
Query 1107 TGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTATACT-AAATGGACCGT 1165
|||||||||||||||||||| |||| || ||| ||||| || ||||| ||| |||||||
Sbjct 1023 CGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAAA-GGACCGT 1081
Query 1166 ATGCGATTCCTCCTTTTGATTGGTCTTGCCGT-AGCTCTG-GAGTTAAGAACA 1216
|||||||||||||||||||| |||| |||| | || |||| || |||||||||
Sbjct 1082 ATGCGATTCCTCCTTTTGATCGGTCCTGCC-TCAGATCTGAGA-TTAAGAACA 1132
> Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121
Length=1185
Score = 824 bits (446), Expect = 0.0
Identities = 908/1123 (81%), Gaps = 63/1123 (6%)
Strand=Plus/Plus
Query 110 TCTTTTTATCAACT-TTTGTAGTCACTAAC-GTGAGCTCGGAAACTA-AGTGCCGGGAGT 166
|||||||||| || ||| | ||||||| | || ||||||||| | | |||| | | | |
Sbjct 44 TCTTTTTATCTTCTCTTT-TTGTCACTATCGGT-AGCTCGGAATC-ACAGTGTCAGAACT 100
Query 167 TCAAATCGATCATCAGTTTCGGAGATTCCATTGCCGACACTGGAAACTTGCTTGGCCTCT 226
|| | |||||||||||||| || ||||| ||||||||||| ||||||||||| | ||||
Sbjct 101 TCGAGTCGATCATCAGTTTTGGCGATTCAATTGCCGACACCGGAAACTTGCTCCGTCTCT 160
Query 227 CAGATC-CTAAAGATCTTCCTCACATG-GCG--TTTCCACCGTATGGAGAGAAC-TTCTT 281
| |||| || | |||||||| ||| ||| ||||||||||| |||||| || |||||
Sbjct 161 CGGATCGTTACA-ATCTTCCT---ATGAGCGCATTTCCACCGTACGGAGAG-ACTTTCTT 215
Query 282 CCACCACCCAACTGGTCGTTTCTCCAACGGCCGCCTCATCATTGATTTCATCGCTGAATT 341
|||||| ||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 216 CCACCATCCAACCGGTCGTTTCTCCGACGGCCGCCTCATTATTGACTTCATCGCTGAATT 275
Query 342 CTT-GGGTTTACCGCT-TGTGCCTCCATT-CTAT-GGATCTCAT-AATGCAAACTTTGA- 395
|| ||| || || | ||| ||||| || || | |||||| || |||| |||||||||
Sbjct 276 TTTGGGGCTT-CC-TTATGTTCCTCC-TTACT-TCGGATCT-ATAAATGGAAACTTTGAG 330
Query 396 AAAGGGAGTTAATTTCGCGGTAGGGGGAGCAACCGCTTTGGAACGTTCCTTTCTTGAAGA 455
||| ||||||||||| || |||| |||||| || |||||| | || ||||| |||||
Sbjct 331 AAA-GGAGTTAATTTTGCCGTAGCCTCAGCAACGGCATTGGAAAGCTCATTTCTAGAAGA 389
Query 456 CAGAGGAAT-TCATTTTCCTTACACTAATGTGAGTTTAGGCGTTCAGCTTAATAGCTTCA 514
||||| || |||| ||| | ||| ||| | |||||||| |||||||||| |||||||
Sbjct 390 GAGAGG-ATACCATTGTCC-T-CAC-AATATTAGTTTAGGAATTCAGCTTAAGAGCTTCA 445
Query 515 AGGAGAGTTTACC-TAGCATATGTGGCTCT-CCTTCAGACTGTAGAGATATGATAGAAAA 572
||||||||||||| | | ||||||||| | || ||||| |||||||| ||||| | |||
Sbjct 446 AGGAGAGTTTACCAAATC-TATGTGGCT-TACCATCAGATTGTAGAGAAATGATTGGAAA 503
Query 573 TGCTTTGATTCTCATGGGGGAAATTGGAGGGAATGACTATAACTACGCGTTCTTCGTGGA 632
|||||||||||||||||| || ||||||| ||| || ||||| | | | || ||| | |
Sbjct 504 TGCTTTGATTCTCATGGGAGAGATTGGAGCGAACGATTATAATTTCCCATTGTTC--GAA 561
Query 633 CAAAG-GCATT-GA-AGAGATCAAGGAGCT-GATGCCCCTGGTGATCACTACTATTTCTT 688
| || | || || | || |||| ||||| | | || ||||||| | |||||||||||
Sbjct 562 CTCAGACCCTTAGACA-AGGTCAAAGAGCTCG-TTCCGTTGGTGATTAGTACTATTTCTT 619
Query 689 CTGCAATCACGGAGTTGATCGGTATGGGGGGAAGAACATTTTTGGTGCCCGGAGAGTTCC 748
| || || ||||| ||||| ||||||||||||||||||||| |||||||||| | |||||
Sbjct 620 CAGCGATTACGGATTTGATTGGTATGGGGGGAAGAACATTTATGGTGCCCGGCGGGTTCC 679
Query 749 CAGTCGGATGCTCAGTATTGTATTTGACATCACATCAAACATCAAACATGGAAGAATACG 808
| |||||||||||||| | |||||||| | | ||||||||||||||||||||||| |
Sbjct 680 CTCTCGGATGCTCAGTAGCATTTTTGACATTATACCAAACATCAAACATGGAAGAATATG 739
Query 809 ATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGTGAAAACCATGGTGAGCAGC 868
|||||||||||||||||||||||||||| ||||||||||| ||| |||| | |||||||
Sbjct 740 ATCCTTTAACAGGATGTTTGAAATGGCTAAACAAGTTTGGAGAATACCACAGCGAGCAGC 799
Query 869 TT-AGAGCAGAACTCAACAGACTCCAG-AAGTTGTACCCTCATGTTAACATCATATACGC 926
|| || ||||||||||| |||||| || || | |||||||||| ||||||||||| ||
Sbjct 800 TTCAG-GCAGAACTCAAGAGACTC-AGGAAACTCAACCCTCATGTCAACATCATATATGC 857
Query 927 TGACTACTACAACGCG-CTGTTTCACCTTTATCAAGAACCAGCCAAATTCGGATTCATGA 985
|||||||||||| || | ||| | |||| ||||||||| |||||| ||||||||| |
Sbjct 858 TGACTACTACAATGCTTC-GTTGCGCCTTGGCCAAGAACCAACCAAATACGGATTCATAA 916
Query 986 ACAGAC-CTTTGTCCGCTTGTTGCGGCGCAGGAGGACCGTACAACTAT-ACCGT-AGGTA 1042
|||||| ||| ||| ||||||||||| | ||||||||||||||||| | | | | || ||
Sbjct 917 ACAGACACTT-GTCAGCTTGTTGCGGTGTAGGAGGACCGTACAACT-TCAACTTCAG-TA 973
Query 1043 GGAAAT-GTGGGACTGATAT-AGTTGAAAGTTGTGATGATCCTTCAAAGTATGTGGCTTG 1100
| || | |||||| || || ||| ||| |||| |||||||||||||||||||||| ||
Sbjct 974 G-AAGTTGTGGGAGTG-TAGGAGTGGAATCTTGTAATGATCCTTCAAAGTATGTGGCCTG 1031
Query 1101 GGACGGTGTTCATATGACTGAGGCTGCGTACAGATTGATGGCTGAGGGTAT-ACTAAATG 1159
||| || ||||||||||||||||||| || | || ||||||||| || || ||| || |
Sbjct 1032 GGATGGCCTTCATATGACTGAGGCTGCATATAAATCGATGGCTGATGG-ATTACTCAACG 1090
Query 1160 GACCGTATGCGATTCCTCCTTTTGATTGGTCTTGCCGTAGCTC 1202
|| | ||||||||||||||||| ||||||| || | ||||||
Sbjct 1091 GAACATATGCGATTCCTCCTTTCAATTGGTCATGTCTTAGCTC 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5