BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28600.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 1724 0.0
Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 1050 0.0
Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094 915 0.0
> Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945
Length=2427
Score = 1724 bits (933), Expect = 0.0
Identities = 1105/1186 (93%), Gaps = 19/1186 (2%)
Strand=Plus/Plus
Query 45 ATGGCGTCTCTAGACT-CTCTAGTCATCTTTCTTTTTTCTACTCTTTTTGTCACTATCGT 103
|||||||||||||| | ||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGCGTCTCTAGA-TGCTCTACTGATCTTTCTTTTTTCTACTCTACTTGTCACTATCGT 59
Query 104 GAGCTCGGAAACGCCGTGCCCGAATTTCAAGTCGATCATCAGTTTCGGCGATTCGATTGC 163
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 60 GAGCTCGGAAACGCCGTGCCGGAATTTCAAGTCGATCATCAGTTTCGGTGATTCGATTGC 119
Query 164 GGACA-CGGGAAACTTGGTTGGTCTCTCTGATCGTAACCAGCTTCCTGTGACTGCGTTTC 222
|||| |||| |||||||| ||||||||| |||||||| | |||||||||||||||||||
Sbjct 120 CGACACCGGG-AACTTGGTCGGTCTCTCTAATCGTAACAATCTTCCTGTGACTGCGTTTC 178
Query 223 CACCGTACGGAGAAACCTTCTTCCACCACCCAACCGGTCGTTCCTGCGATGGCCGCATCA 282
|||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 179 CACCATACGGAGAAACTTTCTTCCACCAACCAACCGGCCGTTCCTGCGACGGCCGCATCA 238
Query 283 TCATGGACTTTATCGCTGAATTTGTGGGGCTTCCTTATGTGCCTCCGTACTTTGGATCTA 342
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 239 TCATGGACTTTATCGCTGAATTTGTGGGCCTTCCTTATGTGCCTCCTTACTTTGGATCTA 298
Query 343 AAAATAGAAACTTTGATAAGGGTGTTAATTTCGCGGTAGCCGGAGCAACGGCACTGAAAA 402
||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 299 AAAATGGAAACTTTGATAAGGGCGTTAATTTCGCGGTAGCTGGAGCAACGGCACTGGAAA 358
Query 403 GTTCCTTTCTTAAGAAGAGAGGAATTCAACCACACACCAACGTTAGTTTAGGAGTTCAGC 462
|||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 GTTCCTTTCTCATGAAGAGAGGAATTCATCCACACACCAACGTTAGTTTAGGAGTTCAGC 418
Query 463 TAAAGAGCTTCAA-AAAGAGTTTACCAAATTTATGCGGCTCACCATCAGACTGTAGAGAT 521
| ||||||||||| ||| |||||||||||| |||| ||||| |||||||| |||||||||
Sbjct 419 TTAAGAGCTTCAAGAAA-AGTTTACCAAATATATGTGGCTCTCCATCAGATTGTAGAGAT 477
Query 522 ATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCA 537
Query 582 TTCTTC-AACCGCAAACCCGTTAAGGAAGTTGAAGAGCTGGTTCCATTTGTAATCGCTTC 640
|||||| ||| |||||||| | ||||||||| ||||||||||||| ||||| |||||| |
Sbjct 538 TTCTTCGAAC-GCAAACCCATCAAGGAAGTTAAAGAGCTGGTTCCGTTTGTGATCGCTAC 596
Query 641 TATTTCTTCTACAATAACGGAGTTGATTGGTATGGGGGGTAAAACCTTTCTAGTGCCCGG 700
|||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 TATTTCTTCTGCAATCACGGAGTTGATTGGTATGGGGGGAAAAACCTTTCTAGTGCCCGG 656
Query 701 AGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTATA-CAAAACATCAAACAAGG 759
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 657 AGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTATATCAAA-CATCAAACAAGG 715
Query 760 ACGAATACGATCCTTCAACAGGATGTTTGAAATGGTTGAACAAGTTTGGCGAATACCATA 819
| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 716 AAGAATACGATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGCGAATACCACA 775
Query 820 GCGAGAAACTTAAGGTGGAACTCAACAGACTTAGGAAGCTCTACCCTCATGTCAACATCA 879
|| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 776 GCCAGCAACTTAAGACGGAACTCAACAGACTTAGGAAGCTCAACCCTCATGTCAACATCA 835
Query 880 TATACGCTGACTACTACAACTCTCTCTTGCGCATTTTTAAAGAACCAGCCAAATTCGGGT 939
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 836 TATACGCTGACTACTACAACGCTCTCTTGCGCCTTTTTAAAGAACCAGCCAAATTCGGGT 895
Query 940 TCATGGAAAGACCCTTCCCTGCTTGTTGCGGTATAGGAGGACCGTACAACTTCAACTTCA 999
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCATGGACAGACCCTTGCATGCTTGTTGCGGTATAGGAGGACCGTACAACTTCAACTTCA 955
Query 1000 CTAGGAAATGTGGGAGTGTAGGAGT-GAAATCTTGTAAGGATCCTTCAAAGTATGTGGGC 1058
|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 956 CTAGAAAATGTGGGAGTGTAGGAGTTGAA-TCTTGTAAGGATCCTTCAAAGTATGTGGGC 1014
Query 1059 TGGGATGGCGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAAT 1118
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGGGACGGCGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAAA 1074
Query 1119 GGACCATATGCGAATCCTCCTTTTGATCGGTCCTGCCTCAGATCTGAGATTAAGAA---G 1175
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 GGACCGTATGCGATTCCTCCTTTTGATCGGTCCTGCCTCAGATCTGAGATTAAGAACAAG 1134
Query 1176 GAGTCATT-GTACAATCAAAGTACTCTGACACAAGCTTGTGTGAAA 1220
|||||||| | |||| ||| ||||||| ||||||||| || ||||
Sbjct 1135 GAGTCATTAG-ACAAACAATTTACTCTGGCACAAGCTT-TG-GAAA 1177
Score = 887 bits (480), Expect = 0.0
Identities = 922/1130 (82%), Gaps = 52/1130 (5%)
Strand=Plus/Plus
Query 73 TTCTT-TTTTCTACTCTTTTTGTCACTATC-GTGAGCTCGGAAACGCCGTGCCCGAATTT 130
||||| || ||||||||||| |||||| || | || |||| |||||| |||| ||||||
Sbjct 1300 TTCTTATTATCTACTCTTTTGGTCACT-TCTGCGAACTCGCAAACGCAATGCCGGAATTT 1358
Query 131 CAAGTCGATCATCAGTTTCGGCGATTCGATTGCGGACACGGGAAACTTGGTTGGTCTCTC 190
||| || ||||| |||||||| ||||| ||||| ||||| ||||||||| | ||||||||
Sbjct 1359 CAAATCAATCATTAGTTTCGGGGATTCAATTGCCGACACCGGAAACTTGCTCGGTCTCTC 1418
Query 191 TGATCGTAACCAGCTTCCTG-TGACTGCGTTTCCACCGTACGGAGAAACCTTCTTCCACC 249
|||| |||| | ||||||| | | || |||| ||||||||||||||||||||||||||
Sbjct 1419 GGATCCTAACAATCTTCCTGCT-TCAGCATTTCTACCGTACGGAGAAACCTTCTTCCACC 1477
Query 250 ACCCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTT-ATCGCTGAATT-TGT 307
||||||||||||||| || ||| |||||| ||||||| || ||| || |||||||| | |
Sbjct 1478 ACCCAACCGGTCGTTACTCCGACGGCCGCCTCATCATCGA-TTTCATTGCTGAATTCT-T 1535
Query 308 GGGGCTTCC-TTATGTGCCTCCGTACTTT--GGATCTAAAAATAG-AAACTTTGATAAGG 363
||| |||| | ||||||||| | ||| |||| | |||| | ||||||||| ||||
Sbjct 1536 GGGTTTTCCGCT-TGTGCCTCC-T-TTTTACGGATGTCGAAAT-GCAAACTTTGAGAAGG 1591
Query 364 GTGTTAATTTCGCGGTAGCCGGAGCAACGGCACTGA-AAAGTTCCTTTCTTAAGAAGAGA 422
| |||||||||||||| | |||||||| ||| | | | | |||||||||| || || ||
Sbjct 1592 GAGTTAATTTCGCGGTGGGGGGAGCAACAGCA-TTAGATACTTCCTTTCTTGAGGAGGGA 1650
Query 423 GGAATTCA-AC-CACA-CACCAACGTTAGTTTAGGAGTTCAGCTAAAGAGCTTCAA-AAA 478
|||||||| | | | |||||||| ||| || | |||||||| | ||||||||| ||
Sbjct 1651 GGAATTCATTCTGATATTACCAACGTCAGTCTAAGCGTTCAGCTTAGGAGCTTCAAGGAA 1710
Query 479 GAGTTTACCAAATTTATGCGGCTCACCATCAGACTGTAGAGATATGATTGGAAATGCTTT 538
||||| || || ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1711 -AGTTTGCCTAACTTATGTGGCTCTCCATCAGATTGTAGAGATATGATTGGAAATGCTTT 1769
Query 539 GATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCAACCGCAAACC 598
|||||||||||||||||| ||||| ||||||||||||||| || ||||| | |||||| |
Sbjct 1770 GATTCTCATGGGAGAGATCGGAGGAAATGATTATAATTTCGCACTCTTCCAGCGCAAAGC 1829
Query 599 CGTTAAGGAAGTTGAAGAGCTGGTTCCATTTGTAATC-GCTTCTATTTCTTCTA-CAAT- 655
| || |||||||||||||||||||||| ||||| || | | | ||||||| | ||||
Sbjct 1830 CATTGAGGAAGTTGAAGAGCTGGTTCCGTTTGTGGTCAG-TGCCATTTCTT-TGGCAATT 1887
Query 656 AACGGAGTTGAT-TGGTATGGGGGGTAA-AACCTTTCTAGTGCCCGGAGAGTTCCCTATC 713
|| ||| ||| | || |||||| | || ||| || ||||| || ||| | || || ||
Sbjct 1888 AA-GGAATTGGTCTG-TATGGGAGC-AAGAACATTCCTAGTTCCTGGAAATTTTCCGCTC 1944
Query 714 GGATGCTCAGTAGTCT-ATTTGACATTATACAAAACATCAAACAAGGACGAATACGATCC 772
|||||||| |||| || |||||||||||||| |||||||||||| ||| ||||| |||||
Sbjct 1945 GGATGCTCTGTAG-CTTATTTGACATTATACCAAACATCAAACATGGAAGAATATGATCC 2003
Query 773 T-TCAACAGGATGTTTGAAATGGTTGAACAAGTTTGGC-GAATACCATAGCGAGAAACTT 830
| | ||||||||||||||||||| ||||| ||| | ||||| | | |||| | |||
Sbjct 2004 TCT-AACAGGATGTTTGAAATGGCTGAACGTTTTTT-CAGAATATTACAACGAGCAGCTT 2061
Query 831 AAGGTGGAACTCAACAGACTTA-GGAAGCTCTACCCTCATGTCAACATCATATACGCTGA 889
|| |||||||||||||| | ||| | | ||||||||||||||||||||||| |||||
Sbjct 2062 CAGAAAGAACTCAACAGACTCAAGGA-GTTGTACCCTCATGTCAACATCATATATGCTGA 2120
Query 890 CTACTACAACTCTCTCTTGCGCATTTTTAAAGAACCAGCCAAATTCGGGTTCATGGAAAG 949
|||||||||| |||| |||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 2121 CTACTACAACGCTCTGTTGCGCCTTTTCCCAGAACCAGCCAAATTCGGGTTCATGGACAG 2180
Query 950 ACCCTT-CCCTGCTTGTTGCGG-TATAGGAGGACCGTACAACTTCAACTTCACTAGGAA- 1006
|||||| ||| ||||||||||| | |||| ||||| |||||||||||||| | ||| ||
Sbjct 2181 ACCCTTGCCC-GCTTGTTGCGGGT-TAGGTGGACCATACAACTTCAACTTTAGTAG-AAG 2237
Query 1007 ATGTGGGAGTGTAGGAGT-GAAATCTTGTAAG-GATCCTTCAAAGTATGTGGGCTGGGAT 1064
|||||||||||||||||| ||| | ||||| | |||||||| ||||||||| ||||||
Sbjct 2238 ATGTGGGAGTGTAGGAGTTGAA-TATTGTA-GTGATCCTTCCAAGTATGTGAATTGGGAT 2295
Query 1065 GGCGTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAATGGACCA 1124
||| ||||||||||||| || ||||||| ||||||| |||| || ||||||| |||||
Sbjct 2296 GGCATTCATATGACTGAAGCCGCATACAGATGGATATCTGAGGGCTTACTCAAGGGACCG 2355
Query 1125 TATGCGAATCCTCCTTTTGATCGGTCCTGCCTCAGATCTGAGATTAAGAA 1174
||||| | |||| |||| || |||| ||||| || || ||||||| |||
Sbjct 2356 TATGCTATTCCTACTTTCAATTGGTCATGCCTAAGCTCCGAGATTATGAA 2405
> Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121
Length=1185
Score = 1050 bits (568), Expect = 0.0
Identities = 942/1120 (84%), Gaps = 35/1120 (3%)
Strand=Plus/Plus
Query 74 TCTTTTT-TCTACTCTTTTTGTCACTATC-GTGAGCTCGGAAACGCCGTGCCCGAATTTC 131
||||||| ||| ||||||||||||||||| || ||||||||| | | ||| | ||| |||
Sbjct 44 TCTTTTTATCTTCTCTTTTTGTCACTATCGGT-AGCTCGGAATCACAGTGTCAGAACTTC 102
Query 132 AAGTCGATCATCAGTTTCGGCGATTCGATTGCGGACACGGGAAACTTGGTTGGTCTCTCT 191
|||||||||||||||| |||||||| ||||| ||||| ||||||||| | |||||||
Sbjct 103 GAGTCGATCATCAGTTTTGGCGATTCAATTGCCGACACCGGAAACTTGCTCCGTCTCTCG 162
Query 192 GATCGTAACCAGCTTCCTGTGA-CTGCGTTTCCACCGTACGGAGAAACCTTCTTCCACCA 250
|||||| || | |||||| ||| | || ||||||||||||||||| || |||||||||||
Sbjct 163 GATCGTTACAATCTTCCTATGAGC-GCATTTCCACCGTACGGAGAGACTTTCTTCCACCA 221
Query 251 CCCAACCGGTCGTTCCTGCGATGGCCGCATCATCATGGACTTTATCGCTGAATTTGTGGG 310
||||||||||||| || ||| |||||| |||| || ||||| |||||||||||| ||||
Sbjct 222 TCCAACCGGTCGTTTCTCCGACGGCCGCCTCATTATTGACTTCATCGCTGAATTTTTGGG 281
Query 311 GCTTCCTTATGTGCCTCCGTACTTTGGATCTAAAAATAGAAACTTTGATAAGGGTGTTAA 370
|||||||||||| ||||| ||||| ||||||| |||| |||||||||| || || |||||
Sbjct 282 GCTTCCTTATGTTCCTCCTTACTTCGGATCTATAAATGGAAACTTTGAGAAAGGAGTTAA 341
Query 371 TTTCGCGGTAGCCGGAGCAACGGCACTGAAAAGTTCCTTTCTTAAGAAGAGAG-GAAT-T 428
||| || |||||| |||||||||| || |||| || |||| | ||||||||| | ||
Sbjct 342 TTTTGCCGTAGCCTCAGCAACGGCATTGGAAAGCTCATTTC-T-AGAAGAGAGAGGATAC 399
Query 429 CA--ACCACACACCAACGTTAGTTTAGGAGTTCAGCTAAAGAGCTTCAAAAAGAGTTTAC 486
|| | | || ||| ||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 400 CATTGTC-CTCA-CAATATTAGTTTAGGAATTCAGCTTAAGAGCTTCAAGGAGAGTTTAC 457
Query 487 CAAATTTATGCGGCTCACCATCAGACTGTAGAGATATGATTGGAAATGCTTTGATTCTCA 546
||||| |||| |||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 458 CAAATCTATGTGGCTTACCATCAGATTGTAGAGAAATGATTGGAAATGCTTTGATTCTCA 517
Query 547 TGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTC-AACCGCAAACCCGTTA-A 604
||||||||||||||| ||| ||||||||||||||||| ||| ||| || |||| ||| |
Sbjct 518 TGGGAGAGATTGGAGCGAACGATTATAATTTCCCATTGTTCGAACT-CAGACCC-TTAGA 575
Query 605 GGAAGTTGAA-GAGCTGGTTCCATTTGTAATC-GCTTCTATTTCTTCTA-CAATAACGGA 661
||| | || ||||| ||||| || || || | | |||||||||| | | || |||||
Sbjct 576 C-AAGGTCAAAGAGCTCGTTCCGTTGGTGATTAG-TACTATTTCTTC-AGCGATTACGGA 632
Query 662 GTTGATTGGTATGGGGGGTAA-AACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGCT 720
||||||||||||||||| || ||| ||| | |||||||| | ||||||| |||||||||
Sbjct 633 TTTGATTGGTATGGGGGG-AAGAACATTTATGGTGCCCGGCGGGTTCCCTCTCGGATGCT 691
Query 721 CAGTAGTC-TATTTGACATTATACAAAACATCAAACAAGGACGAATACGATCCTTCAACA 779
|||||| | | ||||||||||||| |||||||||||| ||| ||||| ||||||| ||||
Sbjct 692 CAGTAG-CATTTTTGACATTATACCAAACATCAAACATGGAAGAATATGATCCTTTAACA 750
Query 780 GGATGTTTGAAATGGTTGAACAAGTTTGGCGAATACCATAGCGAGAAACTTAAGGTGGAA 839
||||||||||||||| | ||||||||||| |||||||| |||||| | ||| ||| |||
Sbjct 751 GGATGTTTGAAATGGCTAAACAAGTTTGGAGAATACCACAGCGAGCAGCTTCAGGCAGAA 810
Query 840 CTCAACAGACTTAGGAAGCTCTACCCTCATGTCAACATCATATACGCTGACTACTACAAC 899
||||| ||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 811 CTCAAGAGACTCAGGAAACTCAACCCTCATGTCAACATCATATATGCTGACTACTACAA- 869
Query 900 T-CTCTC-TTGCGCATTTTTAAAGAACCAGCCAAATTCGGGTTCATGGAA-AGACCCTTC 956
| || || |||||| || |||||||| |||||| ||| ||||| || |||| |||
Sbjct 870 TGCT-TCGTTGCGCCTTGGCCAAGAACCAACCAAATACGGATTCATA-AACAGACACTTG 927
Query 957 CCTGCTTGTTGCGGTATAGGAGGACCGTACAACTTCAACTTCACTAGGAAAT-GTGGGAG 1015
| |||||||||||| ||||||||||||||||||||||||||| ||| || | |||||||
Sbjct 928 TCAGCTTGTTGCGGTGTAGGAGGACCGTACAACTTCAACTTCAGTAG-AAGTTGTGGGAG 986
Query 1016 TGTAGGAGTGAAATCTTGTAAGGATCCTTCAAAGTATGTGGGCTGGGATGGCGTTCATAT 1075
|||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct 987 TGTAGGAGTGGAATCTTGTAATGATCCTTCAAAGTATGTGGCCTGGGATGGCCTTCATAT 1046
Query 1076 GACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAATGGACCATATGCGAATCC 1135
||||||||||||||| |||| ||| ||||||||| ||||||| ||| ||||||||| |||
Sbjct 1047 GACTGAGGCTGCATATAAATCGATGGCTGATGGATTACTCAACGGAACATATGCGATTCC 1106
Query 1136 TCCTTTTGATCGGTCCTGCCTCAGATCTGAGATTAAGAAG 1175
|||||| || |||| || || || || |||||||||||
Sbjct 1107 TCCTTTCAATTGGTCATGTCTTAGCTCCAAGATTAAGAAG 1146
> Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094
Length=1179
Score = 915 bits (495), Expect = 0.0
Identities = 956/1173 (82%), Gaps = 53/1173 (5%)
Strand=Plus/Plus
Query 45 ATGGCGTCTCTAGACTCTC-TA-GTCA-T---CTTTCTTT-TTTCTACTCTTTTTGTCAC 97
|||||||||| ||| |||| || || | | | |||||| | | ||||||||| |||||
Sbjct 1 ATGGCGTCTCAAGATTCTCATATGTTATTGAGC-TTCTTTATATATACTCTTTTAGTCAC 59
Query 98 TATCGTGAGCTCGGAAACGCCG-TGCCCGAATTTCAAGTCGATCATCAGTTTCGGCGATT 156
||| |||| |||| ||||| | |||| ||| ||| |||||||||||||||| |||||||
Sbjct 60 TATAGTGACCTCGCAAACG-GGATGCCGGAACTTCGAGTCGATCATCAGTTTTGGCGATT 118
Query 157 CGATTGCGGACACGGGAAACTTGGTTGGTCTCTCTGA-TCGTAACCAGCTTCCTGTGACT 215
| ||| ||||||| ||||||||| | ||||||||| | || ||| | ||||||| | |
Sbjct 119 CAATTACGGACACCGGAAACTTGCTCGGTCTCTCT-AGTCCTAAGGATCTTCCTGAGTCG 177
Query 216 GCGTTTCCACCGTACGGAGAAACCTTCTTCCACCA-CCCAACCGGTCGTTCCTGCGATGG 274
||||||||||| ||||||||||||||||||||| | ||| | || |||| || ||| ||
Sbjct 178 GCGTTTCCACCATACGGAGAAACCTTCTTCCACTATCCC-TCGGGCCGTTTCTCCGACGG 236
Query 275 CCGCATCATCATGGACTTT-ATCGCTGAATT-TGTGGGGCTTCCTTATGTGCCTCCGTAC 332
|||| ||||||| || ||| || |||||||| | | ||| |||| |||||||||| |
Sbjct 237 CCGCCTCATCATCGA-TTTCATTGCTGAATTCT-TAGGGATTCCACATGTGCCTCCAT-T 293
Query 333 TT-TGGATCTAAAAATAGAAACTTTGATAAGGGTGTTAATTTCGCGGTAGCCGGAGCAAC 391
|| ||||||||||||| |||||||||| || || |||||||| ||||| | ||||||||
Sbjct 294 TTATGGATCTAAAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCGGTGGGAGGAGCAAC 353
Query 392 GGCACTGA-AAAGTTCCT-TTCTTAAGAAGAGAGGAATTCA---ACCACACACCAACGTT 446
||||| | || ||| || ||||| || ||||||||| ||| | || | |||| |
Sbjct 354 AGCACT-AGAATGTT-CTGTTCTTGAGGAGAGAGGAACTCATTGTTCTCAAAGCAACATC 411
Query 447 AGTTTAGGAGTTCAGCTAAAGAGCTTCAAAAAGAGTTTACCAAAT-TTATGCGGCTCAC- 504
||||||||| ||||| |||||||||||| ||||||||||| || || || ||||| |
Sbjct 412 AGTTTAGGAAACCAGCTTAAGAGCTTCAAAGAGAGTTTACCATATCTT-TGTGGCTC-CT 469
Query 505 CATC---AGACTGTAGAGATATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAG 561
|||| ||| |||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 470 CATCAGTAGATTGTAGAGATATGATTGGAAATGCTTTTATTCTCATTGGAGAAATTGGAG 529
Query 562 GGAATGATTATAATTTCCCATTCTTCAACCGCAAACCCGTTAAGGAAGTTGAAGAGCTGG 621
||||||||||||| |||||||| ||| | |||||| | || ||||||| |||||||||
Sbjct 530 GGAATGATTATAACTTCCCATTATTCGATCGCAAAAACATTGAGGAAGTCAAAGAGCTGG 589
Query 622 TTCCATTTGTAATCGCTTCTATTTCTTCTACAATAACGGAGTTGATTGGTATGGGGGGTA 681
||||| |||| ||| || |||||||||| | || |||||||| ||| ||| ||| | |
Sbjct 590 TTCCACTTGTGATCACTACTATTTCTTCGGCGATTTCGGAGTTGGTTGATAT-GGGAGCA 648
Query 682 A-AACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGCTCAGTAGTCTATTTGACATTA 740
| ||| || ||||| || ||| | ||||| |||||||||| |||| ||||||||| |||
Sbjct 649 AGAACATTCCTAGTTCCTGGAAATTTCCCGCTCGGATGCTCTGTAGCCTATTTGACGTTA 708
Query 741 TACAAAACATCAAACAAGGACGAATACGATCCTTC-AACAGGATGTTTGAAATGGTTGAA 799
|| ||||||| |||||||| |||||| |||| || |||||||||||||| |||||||||
Sbjct 709 TATGAAACATCGAACAAGGAAGAATACAATCC-TCTAACAGGATGTTTGACATGGTTGAA 767
Query 800 CAAGTTTGGC-GAATACCATAGCGAGAAACTT-AAGGTGGAACTCAACAGACTTAGGAAG 857
| | ||| | | |||||| | |||| | ||| || | |||||||||||||||||||||
Sbjct 768 CGACTTT-TCAGTATACCACAACGAGCAGCTTCAA-GCAGAACTCAACAGACTTAGGAAG 825
Query 858 CTCTACCCTCATGTCAACATCATATACGCTGACTACTACAACTCTCTCTTGCGCATTTTT 917
|| ||||||||||||||||||||||| | ||||||||||||| |||| |||||| || |
Sbjct 826 CTTTACCCTCATGTCAACATCATATATGGTGACTACTACAACACTCTGTTGCGCCTTGTG 885
Query 918 AAAGAACCAGCCAAATTCGGG-TTCATGGAAAGACCCTT-CCCTGCTTGTTGCGGTATAG 975
|||||||| ||||||||||| || ||||| ||||| || ||| ||||||||||| |||
Sbjct 886 CAAGAACCATCCAAATTCGGGCTT-ATGGACAGACCTTTGCCC-GCTTGTTGCGGGGTAG 943
Query 976 GAGGACCGTACAACTTCAACTTCACTAGGAAATGTGGGAGTGTAGGAG-TGAAATCTTGT 1034
||||||| |||||||||| ||| | || |||||||||||| ||||| || ||| ||||
Sbjct 944 GAGGACCATACAACTTCACCTTTAGTATAAAATGTGGGAGTAAAGGAGTTG-AATATTGT 1002
Query 1035 AAG-GATCCTTCAAAGTATGTGGGCTGGGATGGCGTTCATATGACTGAGGCTGCATACAA 1093
|| || ||||| ||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 1003 -AGTGACCCTTCGAAGTATGTGAATTGGGACGGCATTCATATGACTGAGGCTGCATACAA 1061
Query 1094 ATGGATAGCTGATGGAATACTCAATGGACCATATGCGAATCCTCCTTTTGATCGGTCCTG 1153
||||||| | || || |||||||| ||||||||||||| ||||||||| ||| |||||||
Sbjct 1062 ATGGATATCCGAGGGCATACTCAAAGGACCATATGCGATTCCTCCTTTCGATTGGTCCTG 1121
Query 1154 CCTCAGATCTGAGATTAAG-A-AGGA-GTCATT 1183
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Sbjct 1122 CCTCAGCTCTGAGATTAAGGACAAGAAGTCATT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5