BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28650.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912693 jgi|Araly1|912693|Al_scaffold_0001_2947 1845 0.0
> Ahg912693 jgi|Araly1|912693|Al_scaffold_0001_2947
Length=4179
Score = 1845 bits (999), Expect = 0.0
Identities = 1091/1135 (96%), Gaps = 7/1135 (1%)
Strand=Plus/Plus
Query 34 GTAAGCTTTCTACTTATCTTATACTACACCACAATAGTCGTTGCCTCATCAGAATCTCGG 93
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 1987 GTAAGCTTTCTACTTATCTTATACTCCACCACTATCGTCGTTGCCTCATCAGAATCTCGG 2046
Query 94 TGTCGGCGTTACAAATCAATCATCAGCTTCGGTGATTCCATTGCGGACACCGGAAATTAT 153
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2047 TGTCGGCGTTACAAATCAATCATCAGCTTCGGTGACTCCATTGCCGACACCGGAAATTAT 2106
Query 154 GTTCATCTCTCCAACGTCAATAATCTTCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGC 213
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CTTCGTCTCTCCAACGTCAAAAATCTTCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGC 2166
Query 214 TTCTTCCATCCTCCCTCCGGCCGTTACTCGGACGGCCGTCTCGTTATAGATTTCATCGCC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 TTCTTCCATCCTCCCTCCGGCCGTTACTCGGACGGCCGTCTCGTTATAGATTTCATCGCC 2226
Query 274 GAATTCTTGGGACTACCGTACGTTCCGCCTTACTTCGGATCCCAAAACGTGAGCTTCAAT 333
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 GAATTCTTGGGACTACCTTACGTTCCGCCTTACTTCGGATCCCAAAACGTGAGCTTCAAT 2286
Query 334 CAAGGGATAAATTTTGCTGTGTATGGAGCAACCGCCTTGGATCGTGCCTTTCTTGTAAAA 393
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 CAAGGGATAAATTTGGCTGTGTATGGAGCAACCGCCTTGGATCGTGCCTTTCTTGTAAAA 2346
Query 394 CAAGGAATTAAATCTGACTTCACCAATATTAGTCTAAGTGTTCAGCTTAACACCTTCAAG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 CAAGGAATTAAATCTGACTTCACCAATATTAGTCTAAGTGTTCAGCTTAACACCTTCAAG 2406
Query 454 CAGATTTTACCTAACCTT-TGTGCCTCATCTACTCGTGATTGCAGAGAGATGCTTGGAGA 512
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2407 CAGATTTTACCTAAC-TTATGTGCCTCGTCTACTCGTGATTGCAGAGAGATGCTTGGAGA 2465
Query 513 CTCGCTGATACTCATGGGAGAGATTGGTGGAAACGACTATAATTACCCATTTTTTGAAGG 572
|||| |||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 2466 CTCGTTGATACTCATGGGAGAGATTGGAGGTAACGACTATAACTACCCATTTTTCGAAGG 2525
Query 573 AAAAAGTATCAATGAAATCAAAGAGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCTGC 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 CAAAAGTATCAATGAAATCAAAGAGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCTGC 2585
Query 633 TATTGTGGATTTGATTGATTTGGGAGGAAAAACATTCCTGGTACCCGGAAACTTCCCAAT 692
||| || ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2586 AATTATGAATTTGATCGATTTAGGAGGAAAAACATTCCTGGTGCCCGGAAACTTTCCAAT 2645
Query 693 AGGATGTTCCACGGCATATCTTACTCTATTTCAGACCGCGACAGTAGAACACGACCCTTT 752
|||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2646 AGGATGTTCCGCAGCATATCTTACTCTATTTCAGACCGCGATAGTAGAACATGACCCTTT 2705
Query 753 TACAGGTTGTATCCCATGGCTTAACAAATTCGGAGAGCACCATAACGAACAACTTAAGAT 812
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2706 TACAGGTTGTATCCCATGGCTCAACAAATTCGGAGAGCACCATAACGAACAACTTAAGAT 2765
Query 813 AGAACTCAAACAACTCCAAAAACTCTACCCTCATGTCAACATCATTTACGCCGACTACTA 872
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2766 AGAACTCAAACAACTCCAAAAACTCTACCCTCATGTAAACATCATTTACGCCGACTACTA 2825
Query 873 CAACTCTTTGTAC-GGACTTTTTC-AAGAACCAGCCAAATATGGTTTTAAGAACAGACCT 930
||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2826 CAACTCTTTGTACCGG--TTTTTCCAAGAACCAGCCAAATACGGTTTTAAGAACAGACCT 2883
Query 931 TTGGCTGCTTGTTGTGGAGTCGGAGGTCAATACAACTTCACTATTGGTAAAGAGTGTGGA 990
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2884 TTGGCTGCTTGTTGTGGAGTCGGAGGTCAATACAACTTCACCATTGGTAAAGAGTGTGGA 2943
Query 991 GAAAACGGAGTTAGCTATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGTTATCAT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2944 GAAAACGGAGTTAGCTATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGTTATCAT 3003
Query 1051 TTAACCGAAGCCACGTACCAGAAGATGGCTCAGGGTTTACTCAATGGTCGCTATACAACT 1110
|||||||||||||| |||||||| |||| ||||||||||||||| |||| ||||||||||
Sbjct 3004 TTAACCGAAGCCACCTACCAGAAAATGGATCAGGGTTTACTCAACGGTCCCTATACAACT 3063
Query 1111 CCTGCTTTCGACTGGTCCTGCCTTGGCTCTTATGATTTCAGTGGATAAAGATGAT 1165
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3064 CCTGCTTTCGACTGGTCCTGCCTTGGCTCTTATGATT-CAGTGGATAAAGATGAT 3117
Score = 1323 bits (716), Expect = 0.0
Identities = 986/1116 (88%), Gaps = 19/1116 (2%)
Strand=Plus/Plus
Query 36 AAGCTTTCTACTTATCTTATACTACACCACAAT-AGTCGTTGCCTCATCAGAATCTCGGT 94
||||||||||||| |||| ||||||||||| || | | ||||| |||||||||||||| |
Sbjct 30 AAGCTTTCTACTTTTCTTGTACTACACCACCATCA-TTGTTGCTTCATCAGAATCTCGAT 88
Query 95 GTCGGCGTTACAAATCAATCATCAGCTTCGGTGATTCCATTGCGGACACCGGAAATTATG 154
||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 89 GTCGGCGTTTTAAATCGATCATCAGCTTTGGTGATTCCATCGCCGACACCGGAAATTATC 148
Query 155 TTCATCTCTCCAACGTCAATAATCTTCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGCT 214
| ||||||||| | |||||| ||||||||||| |||| ||||||||||| ||||||||||
Sbjct 149 TCCATCTCTCCGATGTCAATCATCTTCCTCAAACCGCCTTTCTTCCTTATGGCGAAAGCT 208
Query 215 TCTTCCATCCTCCCTCCGGCCGTTACTCGGACGGCCGTCTCGTTATAGATTTCATCGCCG 274
||||||||||||||||||| ||| ||| || || |||||| | || || ||||| ||||
Sbjct 209 TCTTCCATCCTCCCTCCGGTCGTGCCTCTGATGGTCGTCTCATCATTGACTTCATTGCCG 268
Query 275 AATTCTTGGGACTACCGTACGTTCCGCCTTACTTCGGATCCCAAAACGTGAGCTTC-AAT 333
|||||||||||||||| ||||| ||||||||| |||||||||||||| |||||| ||
Sbjct 269 AATTCTTGGGACTACCATACGTAATGCCTTACTTTGGATCCCAAAACGTTAGCTTCGAA- 327
Query 334 CAAGGGATAAATTTTGCTGTGTATGGAGCAACCGCCTTGGATCGTGCCTTTCTTGT-AAA 392
|||||||| ||||| || ||||||||||||||||| ||||| || || |||||||| |
Sbjct 328 CAAGGGATCAATTTCGCGGTGTATGGAGCAACCGCATTGGACCGAGCGTTTCTTGTGGGA 387
Query 393 ACAAGGAATTAAATCTGACTTCACCAATATTAGTCTAAGTGTTCAGCTTAACACCTTCAA 452
| |||||||| ||||||| ||||||||| ||||| |||||||||||||| ||| ||||||
Sbjct 388 A-AAGGAATTGAATCTGATTTCACCAATGTTAGTTTAAGTGTTCAGCTTGACATCTTCAA 446
Query 453 GCAGATTTTACCTAACCTT-TGTGCCTCATCTACTCGTGATTGCAGAGAGATGCTTGGAG 511
||||||||| ||||| ||| || ||||| |||||||||||||||| |||||| |||||||
Sbjct 447 GCAGATTTTGCCTAA-CTTATGCGCCTCGTCTACTCGTGATTGCAAAGAGATTCTTGGAG 505
Query 512 ACTCGCTGATACTCATGGGAGAGATTGGTGGAAACGACTATAATTACCCATTTTTTGAAG 571
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 506 ACTCGCTGATACTCATGGGAGAGATTGGAGGAAACGACTATAATTACCCATTTTTCGAAG 565
Query 572 GAAAAAGTATCAATGAAATCAAAGAGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCTG 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 566 GAAAAAGTATCAATGAAATCAAAGAGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCCG 625
Query 632 CTATTGTGGATTTGATTGATTT-GGGAGGAAAAACATTCCTGGTACCCGGAAACTTCCCA 690
| |||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||
Sbjct 626 CAATTGTGGATTTGATCGATTTAGGG-GGAAAAACATTTTTGGTACCCGGAGGCTTCCCA 684
Query 691 ATAGGATGTTCCACGGCATATCTTACTCTATTTCAGACCGCGACAG---TAGAACACGAC 747
||||||||| |||| |||||||||||||||||||||| | ||| ||| ||||||
Sbjct 685 GCAGGATGTTCTGCGGCGTATCTTACTCTATTTCAGACCGTGGCAGAAAAAGACCACGAC 744
Query 748 CCTTTTACAGGTTGTATCCCATGGCTTAACAAATTCGGAGAGCACCATAACGAACAACTT 807
||||| |||||||||||||||||||| ||| |||| || |||||||| |||||||| ||
Sbjct 745 CCTTTCACAGGTTGTATCCCATGGCTCAACGAATTTGGCGAGCACCACAACGAACAGCTA 804
Query 808 AAGATAGAACTCAAACAACTCCAAAAACTCTACCCTCATGTCAACATCATTTACGCCGAC 867
|||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 805 AAGACAGAACTCGAACGACTCCAAAAACTCTATCCTCATGTCAACATCATTTACGCTGAC 864
Query 868 TACTACAACTCTTTGTAC-GGACTTTT-TCAAGAACCAGCCAAATATGGTTTTAAGAACA 925
||| ||||| | || ||| || |||| |||||||||||| ||||| || |||||||| |
Sbjct 865 TACCACAACCCCTTATACAGG--TTTTATCAAGAACCAGCTAAATACGGGTTTAAGAAAA 922
Query 926 GACCTTTGGCTGCTTGTTGTGGAGTCGGAGGTCAATACAACTTCACTATTGGTAAAGAGT 985
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 923 GACCTTTGGCTGCTTGCTGTGGAGTGGGAGGTCAATACAATTTCACTATTGGTAAAGAGT 982
Query 986 GTGGAGA-AAACGGAGTTAGCTATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGT 1044
||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GTGGATATGAA-GGAGTTAGCTATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGT 1041
Query 1045 TATCATTTAACCGAAGCCACGTACCAGAAGATGGCTCAGGGTTTACTCAATGGTCGCTAT 1104
|||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||| ||||
Sbjct 1042 TATCATTTAACCGAAGCCGCGTACAAGAAGATGGCTGAGGGTATACTCAACGGTCCCTAT 1101
Query 1105 ACAACTCCTGCTTTCGACTGGTCCTGCCTTGGCTCT 1140
| | |||||||||||| ||||||||||||||||||
Sbjct 1102 GCCATTCCTGCTTTCGATTGGTCCTGCCTTGGCTCT 1137
Score = 1170 bits (633), Expect = 0.0
Identities = 920/1056 (87%), Gaps = 29/1056 (3%)
Strand=Plus/Plus
Query 120 CTTCGGTGATTCCATTGCGGACACCGGAAATTATGTTCATCTCTCCAACGTCAATAATCT 179
|||||||||||||| || ||||||||||| ||| | ||||| ||| |||||||| ||||
Sbjct 3120 CTTCGGTGATTCCAGCGCCGACACCGGAAACTATCTCCATCTTTCCGACGTCAATCATCT 3179
Query 180 TCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGCTTCTTCCATCCTCCCTCCGGCCGTTA 239
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3180 TCCTCAATCCGCATTTCTTCCTTACGGCGAAACCTTCTTCCATCCTCCCTCCGGCCGTTA 3239
Query 240 CTCGGACGGCCGTCTCGTTATAGATTTCATCGCCGAATTCTTGGGACTACCGTACGTTCC 299
|||||| ||||||||| | || || ||||| || ||||||||||||||||||||||| ||
Sbjct 3240 CTCGGATGGCCGTCTCATCATCGACTTCATTGCTGAATTCTTGGGACTACCGTACGTACC 3299
Query 300 GCCTTACTTCGGATCCCAAAACGTGAGCTTCAATCAAGGGATAAATTTTGCTGTGTATGG 359
||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||
Sbjct 3300 ATATTACTTCGGATCCCAAAACGTGAGCTTTGATCAAGGGATCAATTTCGCGGTGTATGG 3359
Query 360 AGCAACCGCCTTGGATCGTGCCTTTCTTGT-AAAACAAGGAATTAAATCTGACTTCACCA 418
||||| || ||||| || || |||||||| ||| |||||||| ||| ||| |||||||
Sbjct 3360 TGCAACTGCATTGGACCGAGCGTTTCTTGTGGAAA-AAGGAATTGAATTTGATTTCACCA 3418
Query 419 ATATTAGTCTAAGTGTTCAGCTTAACACCTTCAAGCAGATTTTACCTAACCTTTGTGCCT 478
|| ||||| ||||||||||| |||||| |||||| |||||||||||||||||||| |||
Sbjct 3419 ATGTTAGTTTAAGTGTTCAGATTAACAACTTCAAACAGATTTTACCTAACCTTTGCACCT 3478
Query 479 CATCTACTCGTGATTGCAGAGAGATGCTTGGAGACTCGCTGATACTCATGGGAGAGATTG 538
| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3479 CGTCTTCTCGTGATTGTAGAGAGATGCTTGGAGACTCGCTGATACTTATGGGAGAGATTG 3538
Query 539 GTG-GAAACGACTATAATTACCCATTTTTTGAAGGAAAAAGTATCAATGAAATCAAAGAG 597
| | | || |||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 3539 GAGTG-AATGACTATAATTACCCGTTCTTTGAAGGCAAAAGTATCAATGAAATCAAAGAG 3597
Query 598 CTTGTTCCTCTAATCATCAAAGCTATTTCTTCTGCTATTGTGGATTTGATTGATTT-GGG 656
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 3598 CTTGTTCCTCTAGTCATCAAAGCTATTTCTTCTGCGATTGTGGATTTGATTGATTTAGGG 3657
Query 657 AGGAAAAACATTCCTGGTACCCGGAAACTTCCCAATAGGATG-T-TCCACGGCATATCTT 714
|| |||||||| ||||| ||||||||||||||| ||||||| | ||| | || ||||||
Sbjct 3658 -GGCAAAACATTTCTGGTCCCCGGAAACTTCCCATTAGGATGTTATCC-C-GCGTATCTT 3714
Query 715 ACTCTATTTCAGACCGCGACAGTAG-A-AC-ACGACCCTTTTACAGGTTGTATCCCATGG 771
|||||||||||||||||| ||| || | || ||||||||| ||||||||| | | ||||
Sbjct 3715 ACTCTATTTCAGACCGCGGCAGAAGAAGACTACGACCCTTCCACAGGTTGTCTACGATGG 3774
Query 772 CTTAACAAATTCGGAGAGCACCATAACGAACAACTTAAGATAGAACTCAAACA-ACTCCA 830
|| ||| |||| | |||||| || ||||| || || |||| |||||||||| | ||||||
Sbjct 3775 CTCAACGAATTTGTAGAGCATCACAACGACCAGCTCAAGACAGAACTCAAA-AGACTCCA 3833
Query 831 AAAACTCTACCCTCATGTCAACATCATTTACGCCGACTACTACAACTCTTTGTACGGACT 890
| |||| ||| ||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 3834 AGAACTATACGATCATGTCAACATCATTTACGCCGACTACTACAACTCTTTATTC---CT 3890
Query 891 TTT-T-C-AAGAACCAGCCAAATATGGTTTTAAGAACAGACCTTTGGCTGCTTGTTGTGG 947
|| | | ||||||||| ||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 3891 GTTATACCAAGAACCAGTCAAATATGGGTTTAGGAACCGACCTTTGGCTGCTTGTTGTGG 3950
Query 948 -AGTCGGAGGTCAATACAACTTCACTATTGGTAAAGAGTGTGGAGAAA-ACGGAGTTAGC 1005
| |||||||||||||||||||||||||| || ||||||||||| | | | | |||||||
Sbjct 3951 GA-TCGGAGGTCAATACAACTTCACTATTAGTGAAGAGTGTGGACACAGA-GAAGTTAGC 4008
Query 1006 TATTGTCAAAATCCTTCTGAGTATGTGAATTGGGATGGTTATCATTTAACCGAAGCCACG 1065
|||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 4009 TATTGTCAAAATCCTTCTGAATATGTGAACTGGGACGGTTATCATTTAACCGAAGCCACA 4068
Query 1066 TACCAGAAGATGGCTCAGGGTTTACTCAATGGTCGCTATACAACTCCTGCTTTCGACTGG 1125
|||||||||||||||| | ||||||||| |||| |||| |||| |||||||||||||||
Sbjct 4069 CACCAGAAGATGGCTCAAGTTTTACTCAACGGTCCCTATGCAACACCTGCTTTCGACTGG 4128
Query 1126 TCCTGCCTTGGCTCTTATGATTTCAGTGGATAAAGA 1161
|||||| || ||||| | || |||||||||||||
Sbjct 4129 TCCTGCTTTAGCTCTG--G-TT-CAGTGGATAAAGA 4160
Score = 630 bits (341), Expect = 6e-180
Identities = 523/610 (86%), Gaps = 16/610 (3%)
Strand=Plus/Plus
Query 36 AAGCTTTCTACTTATCTTATACTACACCA-CAATAGTCGTTGCCTCATCAGAATCTCGGT 94
||||||||||||| ||||||||| ||||| | || | ||||| |||||||||||||| |
Sbjct 1179 AAGCTTTCTACTTGTCTTATACTCCACCATC-AT--T-GTTGCTTCATCAGAATCTCGAT 1234
Query 95 GTCGGCGTTACAAATCAATCATCAGCTTCGGTGATTCCATTGCGGACACCGGAAATTATG 154
||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1235 GTCGGCGTTTTAAATCGATCATCAGCTTTGGTGATTCCATCGCCGACACCGGAAATTATC 1294
Query 155 TTCATCTCTCCAACGTCAATAATCTTCCTCAAGCCGCATTTCTTCCTTACGGCGAAAGCT 214
| ||||||||| |||||||| ||||||||||| |||| ||| ||||||| || |||||||
Sbjct 1295 TCCATCTCTCCGACGTCAATCATCTTCCTCAAACCGCCTTTTTTCCTTATGGTGAAAGCT 1354
Query 215 TCTTCCATCCTCCCTCCGGCCGTTACTCGGACGGCCGTCTCGTTATAGATTTCATCGCCG 274
|||||||||||||||| || ||| ||| || ||||||||| | || || |||||||| |
Sbjct 1355 TCTTCCATCCTCCCTCTGGTCGTGCCTCTGATGGCCGTCTCATCATCGACTTCATCGCTG 1414
Query 275 AATTCTTGGGACTACCGTACGTTCCGCCTTACTTCGGATCCCAAAACGTGAGCTTC-AAT 333
||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||
Sbjct 1415 AATTCTTGGGACTACCGTATGTTCCACCTTACTTTGGATCCCAAAACGTTAGCTTCGAA- 1473
Query 334 CAAGGGATAAATTTTGCTGTGTATGGAGCAACCGCCTTGGATCGTGCCT-TTCTTGT-AA 391
|||||||| ||||| || ||||||||||||||||| ||||| || || | || ||||
Sbjct 1474 CAAGGGATCAATTTCGCGGTGTATGGAGCAACCGCATTGGACCGAGCGTATT-TTGTGGC 1532
Query 392 AACAAGGAATTAAATCTGACTTCACCAATATTAGTCTAAGTGTTCAGCTTAACACCTTCA 451
| ||||||| ||| ||| ||||||||| ||||| |||||||||||||| ||| |||||
Sbjct 1533 TA-AAGGAATCGAATGTGATTTCACCAATGTTAGTTTAAGTGTTCAGCTTGACATCTTCA 1591
Query 452 AGCAGATTTTACCTAACCTTTGTGCCTCATCTACTCGTGATTGCAGAGAGATGCTTGGAG 511
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1592 AGCAGATTTTGCCTAACCTTTGTGCCTCGTCTTCTCGTGATTGCAGAGAGATGCTTGGAG 1651
Query 512 ACTCGCTGATACTCATGGGAGAGATTGGTGGAAACGACTATAATTACCCATTTTTTGAAG 571
|||||||||||||||||||||||||||| |||||||||| | |||||||| || ||||
Sbjct 1652 ACTCGCTGATACTCATGGGAGAGATTGGAGGAAACGACTTTTTTTACCCATCCTTCGAAG 1711
Query 572 GAAAAAGTATCAATGAAATCAAAG-AGCTTGTTCCTCTAATCATCAAAGCTATTTCTTCT 630
| ||||||||| |||||| |||| | | | | | | |||||||||||||||||||||
Sbjct 1712 GCAAAAGTATCGATGAAACCAAACTA-CAGGAT--T-TGATCATCAAAGCTATTTCTTCT 1767
Query 631 GCTATTGTGG 640
|| |||||||
Sbjct 1768 GCAATTGTGG 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5