BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28680.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473094 jgi|Araly1|473094|fgenesh2_kg.1__3048__AT1G28680.1 2117 0.0
> Ahg473094 jgi|Araly1|473094|fgenesh2_kg.1__3048__AT1G28680.1
Length=1514
Score = 2117 bits (1146), Expect = 0.0
Identities = 1307/1385 (94%), Gaps = 9/1385 (1%)
Strand=Plus/Plus
Query 15 CCATTCTTATTATTAAGGTATGGCGACACTTGAAATTACCGATATAGCCCTGGTTCAACC 74
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CCAATCTTAATATTAAGGTATGGCGACACTTGAAATTACCGAAATAGCCCTGGTTCAACC 60
Query 75 TTCTCACCAACCACTCTCCAACGACCAAACTCTCTCTCTTTCCCATCTCGACAATGATAA 134
||||||||||||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 61 TTCTCACCAACCACTCTCCAACGACCAAACTCTCTCTCTCTCTCATCTTGATAACGATAA 120
Query 135 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTACTCCTCCTCCTCTTCCACCGTCGC 194
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CAACCTCCACGTCAGCTTCCGTTACCTCCGCGTCTA---CTCCTCCTCTTCCACCGTCGC 177
Query 195 C-GGAGAAAGCCCCTCTGCCGTCGTATCCGCCTCTCTTGCCACCGCTCTCGTTCACTACT 253
| ||| |||||||||||| ||||| ||||||||||| ||||||||||| || || || |
Sbjct 178 CGGGA-AAAGCCCCTCTGAAGTCGTCTCCGCCTCTCTCGCCACCGCTCTTGTCCATTATT 236
Query 254 ACCCTCTTGCTGGCTCTCTCCGTCGCTCTGCCTCCGATAACCGATTTGAAC--TACTCTG 311
||||||| |||||||||||||| ||||||||| |||||||||| ||||||| |||| ||
Sbjct 237 ACCCTCTCGCTGGCTCTCTCCGCCGCTCTGCCACCGATAACCGTTTTGAACTATACTGTG 296
Query 312 CTCCGCTGGTCAAAGCGTGCCTTTAGTCAACGCTACAGTGAACTGTACGCTTGAGTCAGT 371
|| |||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 297 CT--GCTGGTCAAAGCGTGCCTTTAGTCAACGCTTCTGTTAACTGTACGCTTGAGTCCGT 354
Query 372 CGGGTATTTGGATGGACCCGATCCAGGTTTCGTCGAGAGATTGGTACCGGATCCGACCCG 431
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 355 CGGGTATTTGGATGGACCCGATCCAGGTTTTGTCGAAAGATTGGTACCGGATCCGACCCG 414
Query 432 GGAGGAAGGAATGGTCAATCCTTGTATCCTCCAGGTCACTATGTTTCAGTGTGGTGGTTG 491
||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 415 GGAGGAAGGAATGGTTAATCCGTGTATACTCCAAGTCACGATGTTTCAGTGTGGTGGTTG 474
Query 492 GGTTCTAGGTGCATCGATTCATCATGCGATCTGCGATGGGTTAGGTGCGAGTCTGTTCTT 551
|||| |||| ||| ||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 475 GGTTTTAGGAGCAGCGATTCACCACGCGATCTGTGATGGGTTAGGTGCGAGTCTTTTCTT 534
Query 552 CAACGCTATGGCGGAATTAGCTCGCGGAGCGACAAAGATTTCGATCGAACCGGTTTGGGA 611
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 535 CAACGCTATGGCGGAATTAGCTCGTGGAGCGACTAAGATCTCGATTGAACCGGTTTGGGA 594
Query 612 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCAGTTCGTGACTT 671
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 CAGAGAACGTTTACTTGGTCCAAGGGAGAAGCCTTGGGTTGGAGCTCCGGTTCGTGACTT 654
Query 672 CTTGAGCCTGGATAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAAAGAGA 731
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 CTTGAGCCTGGACAAGGACTTTGATCCATATGGACAAGCCATTGGAGACGTCAAGAGAGA 714
Query 732 CTGCTTCTTTGTGACCGACGATTCTTTGGATCAATTGAAGGCTCAATTACTCGAGAAATC 791
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 715 GTGCTTCTTCGTGACCGACGAGTCTTTGGACCAATTGAAGGCTCAATTACTCGAGAAATC 774
Query 792 GGGTCTGAATTTCACCACATTCGAAGCTCTTGGTGCTTACATTTGGCGTGCAAAGGTAAG 851
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 775 GGGTGTGAATTTCACCACATTCGAAGCTCTAGGTGCTTACATTTGGCGTGCAAAGGTAAG 834
Query 852 AGCTGCAAAGACTGAGGAAAAGGAGAATGTGAAATTTGTGTATTCGATAAATATAAGGAG 911
|||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 835 AGCTGCGAAGATTGAGGAAAAGGAGAACGTGAAGTTTGTGTATTCGATAAATATAAGGAG 894
Query 912 ATTGATGAATCCACCTTTGCCTAAAGGCTACTGGGGAAATGGATGTGTGCCAATGTATGC 971
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 895 ATTGATGAATCCACCTTTGCCTAAAGGCTACTGGGGAAACGGATGTGTGCCAATGTATGC 954
Query 972 TCAGATCAAAGCTGGAGAACTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAA 1031
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCAGGTCAAAGCTGGAGAGCTCATTGAGCAACCAATCTGGAAAACTGCAGAGCTCATAAA 1014
Query 1032 ACAGAGCAAATCCAATACGAGTGATGAATATGTACGCTCCTTTATCGACTTCCAAGAGCT 1091
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1015 ACAGAGCAAATCCAATGCGAGTGATGAATACGTACGCTCCTTTATCGACTTCCAAGAGCT 1074
Query 1092 GCATCACAAAGATGGAATCAATGCCGGTACAGGAGTGACCGGATTCACGGACTGGCGATA 1151
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1075 GCATCACAAAGATGGAATCAATGCCCGTACAGGAGTGACCGGGTTCACGGACTGGCGATA 1134
Query 1152 CTTGGGGCATTCCACGATTGATTTTGGATGGGGAGGACCTGTGACGGTTTTGCCACTATC 1211
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 CTTGGGGCATTCCACGATTGATTTCGGATGGGGAGGACCTGTGACGGTTTTGCCACTATC 1194
Query 1212 AAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGATGCTGC 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAACAAGTTGCTTGGAAGCATGGAACCATGTTTTTTCTTGCCATATTCTACTGATGCTGC 1254
Query 1272 AGCTGGAAGCAAGAAAGACAGTGGGTTTAAGGTTTTGGTAAATCTGCGCGAATCTGCAAT 1331
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1255 AGCTGGAAGCAAGAAGGACAGTGGGTTTAAGGTTTTGGTGAATCTGCGCGAATCTGCAAT 1314
Query 1332 GCCTGAGTTTAAAGAGGCCATGGATAAGTTCCACAAAGGTGAATTTGCCCTGTCTTGATC 1391
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1315 GCCTGAGTTTAAGGAGGCCATGGAAAAGTTCCACAAAGGTGAATTTGCTCTGTCTTGATC 1374
Query 1392 ACCGA 1396
|||||
Sbjct 1375 ACCGA 1379
Score = 165 bits (89), Expect = 1e-39
Identities = 108/117 (92%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 1430 AAACACAAAATCATCAACCATTTGTACAA-TTTCGATTTCGTCACTGAACAAATGTTTTG 1488
||||| |||||||||||||||||||| || |||| |||| | ||||||||||||||||
Sbjct 1379 AAACAAAAAATCATCAACCATTTGTATAACCTTCGTTTTCATTACTGAACAAATGTTTTT 1438
Query 1489 GAGCTCAGTGTATTTGATTTGAAGAGCGTGAATTAAGAGAAGCCTTACTGTATGTTT 1545
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1439 GAGCTCAGTGTATTTGATTTGAAGAGCGTGAAT-AAGAGAAGCCTTACTGTATGTTT 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5