BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28690.1 Length=1563 Score E Sequences producing significant alignments: (Bits) Value Ahg921924 jgi|Araly1|921924|scaffold_103205.1 2444 0.0 > Ahg921924 jgi|Araly1|921924|scaffold_103205.1 Length=1606 Score = 2444 bits (1323), Expect = 0.0 Identities = 1485/1565 (95%), Gaps = 4/1565 (0%) Strand=Plus/Plus Query 1 ATGAGAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTGCCGTCGAATCATTACTCA 60 |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct 22 ATGAAAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTCCCGTTGAATCACTACTCA 81 Query 61 ACATTCCCGTTGAAACAAAACGTGTCTTCTCTCTCACCGGCGAAATACATTGCGGGAGCT 120 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 82 ACATTCCCGTTGAAACAAAATGTTTCTTCTCTCTCACCGGCAAAATACATTGCGGGAGCT 141 Query 121 TTACAAGAACATATCAATTCTCCGGCCCCAAAAGCTGGTAAGAAGATACACGCAGATATC 180 ||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| |||||| Sbjct 142 TTACAAGAACACATCAATTCTTCGGCTCCAAAAGCTGGGCAGAAGATACACGCCGATATC 201 Query 181 ATCAAAACTGGGTTTCA-ACCAGATTTGAATATATCCATCAAACTACTCATTCTTCATTT 239 ||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||| Sbjct 202 ATCAAAACTGGGTTT-ATACCAGATTTGAACATATCCATCAAACTACTCATTCTACATTT 260 Query 240 AAAATGCGGTTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 299 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 AAAATGCGGCTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 320 Query 300 ATCGGCTTACAACTACATGATTAGTGGGTACTTGAAGCATGGATTGGTAAAGGAATTACT 359 ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 321 ATCGGCTTACAACTACATGATTAGTGGCTACTTAAAGCATGGATTTTTAAAGGAATTACT 380 Query 360 TCTTCTAGTTCAACGGATGTCATACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCCAT 419 ||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||| || Sbjct 381 TCTCCTAGTTCAATGGATATCTTACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCAAT 440 Query 420 GGTTCTAAAGGCTTCTAATAGTCGTGGCTCGACTATGATACTGCCGCGTAGCTTATGTAG 479 ||||||||||||||||||||||| ||| |||| |||| || |||||||||||||||| || Sbjct 441 GGTTCTAAAGGCTTCTAATAGTCTTGGTTCGAATATGTTAATGCCGCGTAGCTTATGCAG 500 Query 480 GTTGGTCCATGCCCGGATTATAAAATGTGATGTTGAGCTAGATGATGTGTTGATTACTGC 539 |||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| || Sbjct 501 GTTGGTCCATGCCCGGATTATAAAATGTGACGTTGAACTCGATGATGTGTTAATTACGGC 560 Query 540 ACTTGTTGATACTTATGTGAAGAGTGGGAAGTTGGAGTCTGCAAGGACTGTGTTTGAAAC 599 |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 561 ACTTGTGGATGCTTATGTGAAGAGTGGGAAGCTGGAGTCTGCAAGGACTGTGTTTGAAAC 620 Query 600 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATCTCAGGTTACATGAATCAAGG 659 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 621 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATTTCAGGTTACATGAATCAAGG 680 Query 660 TTTTGTAGAGGATGCGGAAGAGATTTTCAATACTACCAAAGTGAAGGATATTGTAGTTTA 719 |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 681 TTTTGTGGAGGATGCGGAAGAGATTTTCAATACAACCAAAGTGAAGGATATTGTTGTTTA 740 Query 720 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGGTGAAACTGCTAAGAGATCAGTTGACAT 779 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| Sbjct 741 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGCTGAAACAGCTAGGAGATCAGTTGACAT 800 Query 780 GTATATTTCGATGCAACGAGCTGGTTTCCATCCGAATATTTCAACTTTCGCTAGCGTGAT 839 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 801 GTATATTTCGATGCAACGAGCCGGTTTCCATCCGAATATTTCAACTTTTGCTAGCGTGAT 860 Query 840 TGGAGCGTGTTCGGTTTTGACGTCCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 899 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 861 TGGAGCGTGTTCGGTTTTGACATGCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 920 Query 900 GAAGAGTGGAGTTTACACGCATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 959 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 921 GAAGAGTGGAGTTTACACACATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 980 Query 960 ATGCGGAGGGATCAATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTATT 1019 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 981 ATGCGGAGGGATCGATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTGTT 1040 Query 1020 TTCGTGGACTTCGATGATTGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1079 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 TTCTTGGACTTCGATGATAGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1100 Query 1080 ACTCTTCACTAGGATGAAGGAATTCCGTATAGAACCCAATTATGTAACCTTTCTTGGTGC 1139 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1101 ACTCTTCACTAGGATGAAGGAATTCCATATAGAACCCAATTATGTAACCTTTCTTGGAGT 1160 Query 1140 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1220 Query 1200 GCAGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATAGTTGATCTCAT 1259 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1221 GCGGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATGGTTGATCTCAT 1280 Query 1260 GGGACGAGCTGGAGATTTGAATAAAGCTTTCGAATTTGCTAGGGCGATGCCGGAAAGGCC 1319 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1281 GGGACGAGCTGGAGAACTGAATAAAGCTTTCGAATTTGTTAGGGCGATGCCGGAAAGGCA 1340 Query 1320 TGACTCAGATATTTGGGCAGCTCTTCTCAGTTCTTGTAATTTGCATGGTAATGTTGAACT 1379 | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1341 TAACTCAGATGTTTGGGCAGCTCTTCTCAGTTCTTGTAATCTGCATGGTAATGTTGACCT 1400 Query 1380 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGATAAAAGACCTGGAGCTTA 1439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1401 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGACAAAAGACCTGGAGCTTA 1460 Query 1440 TTTAGCTTTATCCAATGTCTACGCTTCTAATGATAAATGGGACAATGTGAGCAAGATCCG 1499 |||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1461 TTTAGCATTATCGAATGTCTATGCTTCTAATGATAAGTGGGACAATGTGAGCAAGATCCG 1520 Query 1500 AGAAGTGATGAAAAG-AAGAAGGATATCTAAAACTATTGGTCGTAGTTGGACCAGCGAAG 1558 ||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1521 AGAGGTGATGAAA-GTAAGAAGGATATCTAAAAATATCGGTCGTAGTTGGACCAGCGAAG 1579 Query 1559 ATTGA 1563 ||||| Sbjct 1580 ATTGA 1584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58544706565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5