BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28690.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921924 jgi|Araly1|921924|scaffold_103205.1 2444 0.0
> Ahg921924 jgi|Araly1|921924|scaffold_103205.1
Length=1606
Score = 2444 bits (1323), Expect = 0.0
Identities = 1485/1565 (95%), Gaps = 4/1565 (0%)
Strand=Plus/Plus
Query 1 ATGAGAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTGCCGTCGAATCATTACTCA 60
|||| |||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 22 ATGAAAATCTTCAGATTCACGTCAATCTCACCGCGGATTTTCCCGTTGAATCACTACTCA 81
Query 61 ACATTCCCGTTGAAACAAAACGTGTCTTCTCTCTCACCGGCGAAATACATTGCGGGAGCT 120
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 82 ACATTCCCGTTGAAACAAAATGTTTCTTCTCTCTCACCGGCAAAATACATTGCGGGAGCT 141
Query 121 TTACAAGAACATATCAATTCTCCGGCCCCAAAAGCTGGTAAGAAGATACACGCAGATATC 180
||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| ||||||
Sbjct 142 TTACAAGAACACATCAATTCTTCGGCTCCAAAAGCTGGGCAGAAGATACACGCCGATATC 201
Query 181 ATCAAAACTGGGTTTCA-ACCAGATTTGAATATATCCATCAAACTACTCATTCTTCATTT 239
||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 202 ATCAAAACTGGGTTT-ATACCAGATTTGAACATATCCATCAAACTACTCATTCTACATTT 260
Query 240 AAAATGCGGTTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AAAATGCGGCTGCTTGAGTTATGCACGCCAAGTGTTCGACGAATTACCCAAGCCAACATT 320
Query 300 ATCGGCTTACAACTACATGATTAGTGGGTACTTGAAGCATGGATTGGTAAAGGAATTACT 359
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 321 ATCGGCTTACAACTACATGATTAGTGGCTACTTAAAGCATGGATTTTTAAAGGAATTACT 380
Query 360 TCTTCTAGTTCAACGGATGTCATACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCCAT 419
||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 381 TCTCCTAGTTCAATGGATATCTTACTCTGGGGAAAAGGCAGATGGGTACACGCTTTCAAT 440
Query 420 GGTTCTAAAGGCTTCTAATAGTCGTGGCTCGACTATGATACTGCCGCGTAGCTTATGTAG 479
||||||||||||||||||||||| ||| |||| |||| || |||||||||||||||| ||
Sbjct 441 GGTTCTAAAGGCTTCTAATAGTCTTGGTTCGAATATGTTAATGCCGCGTAGCTTATGCAG 500
Query 480 GTTGGTCCATGCCCGGATTATAAAATGTGATGTTGAGCTAGATGATGTGTTGATTACTGC 539
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||
Sbjct 501 GTTGGTCCATGCCCGGATTATAAAATGTGACGTTGAACTCGATGATGTGTTAATTACGGC 560
Query 540 ACTTGTTGATACTTATGTGAAGAGTGGGAAGTTGGAGTCTGCAAGGACTGTGTTTGAAAC 599
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 ACTTGTGGATGCTTATGTGAAGAGTGGGAAGCTGGAGTCTGCAAGGACTGTGTTTGAAAC 620
Query 600 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATCTCAGGTTACATGAATCAAGG 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 621 AATGAAAGATGAGAATGTTGTGTGTTGTACATCAATGATTTCAGGTTACATGAATCAAGG 680
Query 660 TTTTGTAGAGGATGCGGAAGAGATTTTCAATACTACCAAAGTGAAGGATATTGTAGTTTA 719
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 681 TTTTGTGGAGGATGCGGAAGAGATTTTCAATACAACCAAAGTGAAGGATATTGTTGTTTA 740
Query 720 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGGTGAAACTGCTAAGAGATCAGTTGACAT 779
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 741 CAATGCTATGGTGGAAGGTTTCAGCAGATCAGCTGAAACAGCTAGGAGATCAGTTGACAT 800
Query 780 GTATATTTCGATGCAACGAGCTGGTTTCCATCCGAATATTTCAACTTTCGCTAGCGTGAT 839
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 801 GTATATTTCGATGCAACGAGCCGGTTTCCATCCGAATATTTCAACTTTTGCTAGCGTGAT 860
Query 840 TGGAGCGTGTTCGGTTTTGACGTCCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 899
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 861 TGGAGCGTGTTCGGTTTTGACATGCCATGAAGTTGGTCAGCAAGTGCACGCTCAGATTAT 920
Query 900 GAAGAGTGGAGTTTACACGCATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GAAGAGTGGAGTTTACACACATATCAAAATGGGGAGCTCTTTGTTAGACATGTATGCCAA 980
Query 960 ATGCGGAGGGATCAATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTATT 1019
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 981 ATGCGGAGGGATCGATGATGCAAGAAGAGTCTTTGACCAAATGCAAGAGAAAAACGTGTT 1040
Query 1020 TTCGTGGACTTCGATGATTGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1079
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TTCTTGGACTTCGATGATAGATGGATATGGAAAGAATGGAAACCCTGAGGAAGCACTCGA 1100
Query 1080 ACTCTTCACTAGGATGAAGGAATTCCGTATAGAACCCAATTATGTAACCTTTCTTGGTGC 1139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1101 ACTCTTCACTAGGATGAAGGAATTCCATATAGAACCCAATTATGTAACCTTTCTTGGAGT 1160
Query 1140 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TCTCTCTGCTTGTTCACATTCTGGTTTAGTCGATAAAGGTTATGAGATCTTTGAGAGCAT 1220
Query 1200 GCAGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATAGTTGATCTCAT 1259
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1221 GCGGAGAGATTATTCCATGAAACCAAAGATGGAACACTATGCTTGCATGGTTGATCTCAT 1280
Query 1260 GGGACGAGCTGGAGATTTGAATAAAGCTTTCGAATTTGCTAGGGCGATGCCGGAAAGGCC 1319
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1281 GGGACGAGCTGGAGAACTGAATAAAGCTTTCGAATTTGTTAGGGCGATGCCGGAAAGGCA 1340
Query 1320 TGACTCAGATATTTGGGCAGCTCTTCTCAGTTCTTGTAATTTGCATGGTAATGTTGAACT 1379
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1341 TAACTCAGATGTTTGGGCAGCTCTTCTCAGTTCTTGTAATCTGCATGGTAATGTTGACCT 1400
Query 1380 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGATAAAAGACCTGGAGCTTA 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1401 CGCAAGCATAGCTGCGAGTGAGCTTTTCAAACTGAATGCTGACAAAAGACCTGGAGCTTA 1460
Query 1440 TTTAGCTTTATCCAATGTCTACGCTTCTAATGATAAATGGGACAATGTGAGCAAGATCCG 1499
|||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1461 TTTAGCATTATCGAATGTCTATGCTTCTAATGATAAGTGGGACAATGTGAGCAAGATCCG 1520
Query 1500 AGAAGTGATGAAAAG-AAGAAGGATATCTAAAACTATTGGTCGTAGTTGGACCAGCGAAG 1558
||| ||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1521 AGAGGTGATGAAA-GTAAGAAGGATATCTAAAAATATCGGTCGTAGTTGGACCAGCGAAG 1579
Query 1559 ATTGA 1563
|||||
Sbjct 1580 ATTGA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5