BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28760.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473098 jgi|Araly1|473098|fgenesh2_kg.1__3052__AT1G28760.1 2146 0.0
> Ahg473098 jgi|Araly1|473098|fgenesh2_kg.1__3052__AT1G28760.1
Length=1422
Score = 2146 bits (1162), Expect = 0.0
Identities = 1344/1432 (94%), Gaps = 11/1432 (1%)
Strand=Plus/Plus
Query 1 ATGACTActtcttcttcttttcttcgtcttcctcatcgaatctggtttctccttcctctt 60
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACTTCTTCTTCCTTTCTTCGTCTTCCTCATCGAATCTGGTTTCTCCTTCCTCTT 60
Query 61 attgtctttctcttGTTATCCTACGCGGCGGCGCTCAAAAGTGTTGGTCCCGGCGAGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 GTTGTCTTTCTCTTGTTATCCTACGCAGCGGCGCTCAAAAGTGTTGGTCCTAGCGAGCCA 120
Query 121 GCTCTGAATATTAGCCTTAGGT-CGTGCGAGCGAATCCAAGTTTCAGGCTATTCGAGAAC 179
||||||||| ||||||||| || |||| |||||||||||||| |||||||||||||||||
Sbjct 121 GCTCTGAATGTTAGCCTTA-GTCCGTGTGAGCGAATCCAAGTCTCAGGCTATTCGAGAAC 179
Query 180 CAAATTAGGGAAATTCGCTAACTCTCTCAGAGTAAACTTAGTACCAATCCCAGAAAAGCT 239
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 180 CAAATTAGGGAAATTCGCTAACTCTCTTAGGGTAAACTTAGTTCCAATCCCAGAGAAGCT 239
Query 240 ACACCTCAAAATCCAAGTTTGTGTTCACCGAAATGCTACACTTGGAATGTGCCACTGTGA 299
|||| ||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 240 ACACATCAAAATTCAAGTTTGTGTTCACCGGAATGCTACACTTGGAATGTGTCAGTGTGA 299
Query 300 GAAATCTAATTGGAAAAATCTCCAGAGCAGCTCTGTTATATCACCATATGATAAACAATA 359
|||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 300 GAAATCAAATTGGAAAAATCTTCAGAGCAGCTCTGTAATATCTCCATATGATAAACAATA 359
Query 360 CATTGATGTGAGATTCACTGGTAGTGAATATCAGTCGTCTCGTTCAATGATTACGGTCAA 419
||||||||||||||||| ||||||||||||| | |||||||||||| || |||| ||||
Sbjct 360 CATTGATGTGAGATTCAGTGGTAGTGAATATGAATCGTCTCGTTCACTGGTTACAATCAA 419
Query 420 TGTTACAGAAGAGTTTCATCAATGGCGGATTTTTTGTCTTGTAGCGGGATTGATTGTGAT 479
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CGTTACAGAAGAGTTTCATCAATGGCGGATTTTTTGTCTTGTGGCGGGATTGATTGTGAT 479
Query 480 TTTGTTAGCACCTGTTGTTAGCAGTTGGCTACCGTTTTACTATACGAGTTCTATGGCGGT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TTTGTTAGCACCTGTTGTTAGCAGTTGGCTACCTTTTTACTATACGAGTTCTATGGCGGT 539
Query 540 TGGTGTTTTTCTCGTTGTTTTGATTATTATCTTCCAGGTTATGAGGTTATTACCTACTGG 599
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 540 TGGTGTTTTTCTCGTTGTTTTGATTATTATCTTCCAGGTTATGAGGCTATTGCCTACTGG 599
Query 600 GAGGAAGAATGTTATGTATCTTGCGTTTTATGGATCTGTTGTTGGTGCTGGATCTTTCAT 659
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GAGGAAAAATGTTATGTATCTTGCGTTTTATGGATCTGTGGTTGGTGCTGGATCTTTCAT 659
Query 660 TCTACATCAATTCTCAATGATGGTGAATATGATTCTTGTTAATTTTGGGTTGAGTGAGGA 719
| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TTTACATCAGTTCTCAATGATGGTGAATATGATTCTTGTTAATTTCGGGTTGAGTGAGGA 719
Query 720 TATGTATAATCCGGTAGCGATACTTGTGCTTGTTGGGGTGGTTATTACTGGAGCTGCTTT 779
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TATGTATAATCCGGTAGCGATTCTTGTGCTTGTTGGGGTAGTTATTACTGGAGCTGCTTT 779
Query 780 TGGATTTTGGACTGTGAGGAAGTTTGTTGTTTCGAAAGATGGAGGAGGTGTGGATGCTAG 839
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGATTCTGGACTGTGAGGAAATTTGTTGTTTCGAAAGATGGAGGAGGTGTGGATGCTAG 839
Query 840 TGTTGCACAGTTTGTGAAATGGGCTATGCGTTCTGTTGCTGCTACGTTTATTTTGCAGAG 899
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 840 TGTTGCACAGTTTGTGAAATGGGCGATGCGGTCTGTTGCTGCTACGTTTATTTTACAGAG 899
Query 900 TAGTCTTGATACTCCTATGGCCATGGGAGCTTTTGTTTTAGCTAGCTTGTTTGGTTTTCT 959
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 900 TAGTCTTGATACTCCTATGGCGATGGGAGCTTTTGTTTTAGCTAGCTTGCTTGGTTTTCT 959
Query 960 TGTTAGTAAAACGAAAAGCTTTGTAGGGAAAAGTCATTGGTTGGTTTCTGCTGGTGAGAG 1019
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 960 TGTTAGTAAAACGAAAAGCTTTGTAGCTCAAAGTCATTGGCTGGTTTCTGCTAGTGAGAC 1019
Query 1020 ACGTCCGATAATGCATGGACGAGCTGAGTTCCTTAGTCGCCCTGGAGGTGGTGGACTGTG 1079
|||||| ||||||||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct 1020 ACGTCCAATAATGCATGGACGAGCTGAGTTCCTTAGCCGCCCTGGGGGAGATGGACTGTG 1079
Query 1080 GAAGAGTGCTAAGAGTGTACCTTCGTATTCCGGCTCTCCTTCTTATGATGTGATTGTGAG 1139
||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| |
Sbjct 1080 GAAGAGTGCTAGGAGAGTACCTTCATATTCCGGCTCTCCTTCTTACGATGTGA--G---- 1133
Query 1140 CTCACCGTCTTCAGTTAACCGGAGGATACCGATCGGAAATCAGGATTACTATTCTACATT 1199
|||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 1134 CTCACCATCTTCAGTTAACCGGAGAACACCAATCGGAAATCAGGATTACTATTCTACATT 1193
Query 1200 CCATACGACGCCAAACCGGAAGAGGATGTCGAAGAGAGAGTATGACGAGTTGACACAAGA 1259
||| | ||||||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct 1194 CCACAGGACGCCAAACCGGAAGAAGATGTCAAAGAGAGAGTATGAAGAATTGACACAAGA 1253
Query 1260 AACGACACGAGAAGCAATGGCAGGACTTGCAGCTTCTCCAGGATTTAGTGATTGGTTAGT 1319
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1254 AACGACACGGGAAGCAATGGCAGGACTTGCAGCTTCTCCAGGATTCAGTGATTGGTTAGT 1313
Query 1320 TGAGCATGCTGACAGAATCAAGTTGCTTCCCACTGATAGTAGCTATGATGACGAATTGGG 1379
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1314 TGAGCATGCTGACAGAATCAAGTTGCTTCCCACTGA--G-AGCTATGATGACGAATTGGG 1370
Query 1380 TAGTGAATCAGATTCAACCGGTGAACAATCTTGGACACGTTTCTTCTGGTAG 1431
||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1371 TAGTGAATCAGATTCAACCGGTGAACAATCTTGGACAGGTTTTTTCTGGTAG 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5