BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28815.1

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912699 jgi|Araly1|912699|Al_scaffold_0001_2953                    405    1e-112


> Ahg912699 jgi|Araly1|912699|Al_scaffold_0001_2953
Length=354

 Score =  405 bits (219),  Expect = 1e-112
 Identities = 315/359 (88%), Gaps = 16/359 (4%)
 Strand=Plus/Plus

Query  16   ATGTCTTGCAAAGGAGATATCGTGGTTGGTGTGGAGGAAGGATTGTTTCTCTTACCTTCA  75
            |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  1    ATGTCTTGCAAAGGAGATATTGTGGTTGGTGTGGAGGAAGTATTGTTTCTCTTACCTTCA  60

Query  76   AATCTTTTTAATGAACTCTTTCTTGATCG---T---CCATTTCCACAGAGTAATCGAGTA  129
            |||||||||||||||||||||||||||||   |   ||||| ||||||||| |||||| |
Sbjct  61   AATCTTTTTAATGAACTCTTTCTTGATCGCACTTGTCCATTCCCACAGAGTGATCGAGGA  120

Query  130  GGTAGCTACTATGATCGGAAGCCAAGAATGTGGTATGC-ATTGAACCACAAGGGTTCCAT  188
             |||||||||||||||||||||||||||||||||| |  || ||||||| | |||||| |
Sbjct  121  CGTAGCTACTATGATCGGAAGCCAAGAATGTGGTACGAGAT-GAACCACTACGGTTCCTT  179

Query  189  GGTGAGGCCAAATGGTGATGATAAAGGTGCAGCACGAGTTAAGCCACGTGGCACTGGAGT  248
            ||||||||||| ||||||| | |  |||||||| ||||||||||||||||||||||| ||
Sbjct  180  GGTGAGGCCAAGTGGTGAT-ACA--GGTGCAGCGCGAGTTAAGCCACGTGGCACTGGCGT  236

Query  249  GTTTCTTCCTGAGAGACCGGTGAGTAGCTCACAAGAGAA-A--CTCAAC-AACAAGCCAT  304
            ||||||||| |||||||| | |||||||||| ||||||| |  | || | || |||||||
Sbjct  237  GTTTCTTCCCGAGAGACCAGCGAGTAGCTCAGAAGAGAAGAGACCCA-CGAAGAAGCCAT  295

Query  305  GCCCCATCATCTCCTCTCATTCCAGAAAAATCTTTCTTCCTAAGGAATGGTCTTATTAG  363
            ||||| ||| |||||||||||| ||| || |||||||||| ||||||||| ||||||||
Sbjct  296  GCCCCGTCACCTCCTCTCATTCTAGACAAGTCTTTCTTCCCAAGGAATGGGCTTATTAG  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17894971241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5