BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28960.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336003 jgi|Araly1|336003|fgenesh1_pg.C_scaffold_1002568 1266 0.0
> Ahg336003 jgi|Araly1|336003|fgenesh1_pg.C_scaffold_1002568
Length=810
Score = 1266 bits (685), Expect = 0.0
Identities = 772/814 (95%), Gaps = 5/814 (1%)
Strand=Plus/Plus
Query 123 ATGGAGCCTGCGATAACAGCGACTTCTTCTTCTTCTTTCGGTGGTGGCTCTTCTCGTCTC 182
||||||||||||||| || || | ||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGAGCCTGCGATATCA---ACAGCGACTTCTTCTTTCGGTGGTGGGTCTTCTCGACTC 57
Query 183 GCCGCTTTAGCCCAGCAACTTCGCCAATACAAGCCCCCACCTTCTTCATCGTTCGATGAC 242
||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 58 TCCGCTTTGGCCCAGCAACTTCGCCGATACAAGCCGCCACCTTCTTCATCCTTCGATGAC 117
Query 243 TCCGAGGAGATGCAGACAGATCAGGAGACCGCTGGGAAAGTCGTTTCTCAGGTTGGGTTT 302
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 118 GCCGAGGAGATGCAGACAGATCAGGAGACCGCCGGGAAAGTGGTTTCTCAGGTTGGATTT 177
Query 303 CAGGAATCTATTGCTCCTCTTTCGAAAGACCCTGATAGGTTTAAACCCAAGAGAGCCGCT 362
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 178 CAGGAATCTATTGCTCCGGTTTCGAAAGACCCTGAGAGGTTTAAACCCAAGAGAGCTGCT 237
Query 363 GTGTTGATCTGTCTCTTTGAAGGAGATGATGGTGATTTGCGTGTTATTCTTACTAAGAGA 422
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GTGTTGATCTGTATCTTTGAAGGAGATGATGGTGATTTGCGTGTTATCCTTACTAAGAGA 297
Query 423 TCTTCCAAATTGTCTACTCACTCTGGAGAAGTTTCATTGCCAGGTGGTAAAGCGGAGGAG 482
||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 298 TCTTCCAAATTGTCTACTCACTCAGGAGAAGTTTCACTGCCAGGTGGGAAAGCGGAGGAG 357
Query 483 GATGATAAAGATGATGGGATGACTGCTACCAGAGAGGCTGAGGAAGAGATTGGATTGGAC 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 GATGATAAAGATGATGGGATGACTGCAACCAGAGAGGCTGAGGAAGAGATTGGATTGGAC 417
Query 543 CCTTCTCTTGTTGATGTTGTTACTTCTCTTGAACCATTTCTGTCTAAGCATCTTCTTAGA 602
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 418 CCTTCTCTTGTTGATGTTGTGACTTCTCTCGAACCATTTCTCTCTAAGCATCTGCTTAGA 477
Query 603 GTAATTCCTGTGATAGGCATCTTGAGGGACAAAA-ATAAATTCAATCCGATACCAAATCC 661
||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||
Sbjct 478 GTAATTCCTGTGATAGGAATCTTGAGGGACAAAACA-AAATTCAATCCGACACCAAATCC 536
Query 662 TGGGGAAGTGGAAGCTGTGTTTGATGCACCCTTGGAAATGTTCCTTAAGGATGAGAATCG 721
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGGGAAGTGGAAGATGTGTTTGATGCACCCTTGGAAATGTTCCTTAAGGATGAGAATCG 596
Query 722 AAGATCTGAAGAGAGAGAGTGGATGGGTGAAAAGTATTTGATCCATTACTTTGACTACAG 781
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 597 AAGATCTGAAGAGAGAGAGTGGATGGGGGAAAAGTATTTGATCCACTACTTTGACTACAG 656
Query 782 AACAGGAGATAAGGATTATATGATATGGGGTTTAACTGCTGGGATTTTGATCAGAGCTGC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AACAGGAGATAAGGATTATATGATATGGGGTTTAACTGCTGGGATTTTGATCAGAGCTGC 716
Query 842 ATCTGTGACTTATGAAAGACCACCTGCTTTTATCGAGCAGTGCCCGAAGTTTAAGTACCC 901
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 717 ATCTGTGACTTATGAAAGACCACCTGCTTTTATCGAACAGTGCCCTAAGTTTAAGTACCC 776
Query 902 TAAAATGGTAGAAAAACATACTTGTATGCCTTAA 935
||||||||||||||||||||||||||||||||||
Sbjct 777 TAAAATGGTAGAAAAACATACTTGTATGCCTTAA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5