BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29000.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336004 jgi|Araly1|336004|fgenesh1_pg.C_scaffold_1002569 1214 0.0
> Ahg336004 jgi|Araly1|336004|fgenesh1_pg.C_scaffold_1002569
Length=840
Score = 1214 bits (657), Expect = 0.0
Identities = 803/868 (93%), Gaps = 32/868 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGAGGAAGAAGAAAAGAAAGAGAAAGGCGATGAAATCATCACGGCCGTTTACAAG 60
||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTGAAAAAGAAGAGAAGAAAGAGAAAGGCGAGGAAATCATCACGGCCGTTTACAAG 60
Query 61 GTTCACCTTCACTGCCGGAAATGTGCATGCGACATCAAAAAGCCTCTCCTTCGATTCCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCACCTTCACTGCCGGAAATGTGCATGCGACATCAAAAAGCCTCTCCTTCGATTCCAA 120
Query 121 GGGGTTCAAAATGTGGACTTTGATTTGGAGAAGAACGAGATCAAAGTAAAAGGGAAAATA 180
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGGGTTCATAATGTGGACTTTGATTTGGAGAAGAATGAGATCAAAGTAAAAGGGAAAATA 180
Query 181 GAAGTCGTGAAGATTCACAAACAAATCGAGAAATGGAGCAAGAAAAAAGTTGAGCTCATC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGTCGTGAAGATTCACAAGCAAATCGAGAAATGGAGCAAGAAAAAAGTTGAGCTCATC 240
Query 241 TCTCCCAAACCTTCTGAGGTTAAGAAAACCACCACTACAAC-A-A-CAACTACTTCTGTG 297
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 241 GCTCCCAAACCTTCTGAGGTTAAGAAAACCACCACTACAACCACAACAACTACTTCTGTG 300
Query 298 GTAGAAAAGAAGACCACCGAGATTAAAAAGGACGTTATTCGTACGACAGTACTAAAGGTA 357
| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 301 GAAGAAAAGAAGACCACCGAGGTCAAAAAGGAAGTTATTCGTACGACAGTACTAAAGGTA 360
Query 358 CACATTCATTGCGCACAGTGTGACAAAGATCTTCAGCACAAACTCTTGAAACATAAAGCT 417
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CACATTCATTGCCCACAATGTGACAAAGATCTTCAGCACAAACTCTTGAAACACAAAGCT 420
Query 418 ATCCACATTGTCAAAACCGATACAAAGGCGCAAACTCTAACGGTACAAGGGACGATAGA- 476
|| ||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 421 ATTCACATCGTGAAAACTGATACAAAGGCGCAAACCCTAACGGTACAAGGGACTATAGAT 480
Query 477 ATCCGCAAAACTCTTAGCCTATATaaagaagaaagttcacaaacatgcagagatcataag 536
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 A-CCGCAAAACTTTTAACCTATATAAAGAAGAAAGTTCACAAACATGCAGAGATCGTAAG 539
Query 537 ctcaaagaccgaagaagagaagaagaaggaagaagaggataagaagaagaaggaagaaga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCAAAGACCGAAGAAGAGAAGAAGAAGGAAGAAGAGGATAAGAAGAAGAAGGAAGAAGA 599
Query 597 ggataagaagaagaaggaagatgagaagaagaaagaggaagagaagaagaaagaagagga 656
| | | |||||| | | |||| |||||||||||||| | ||| || ||| ||||| |
Sbjct 600 G-A-A-GAAGAA-A-G-AAGACGAGAAGAAGAAAGA--A-GAG--GA-GAA-GAAGA--A 644
Query 657 gaataagaagaaggaaggagaaaaaaagaaagaagaagtaaaagtagaagTAACAACCAA 716
||| | |||||| | || |||| |||||||||||||||| ||||||| || | ||
Sbjct 645 GAA---G--GAAGGA-G-AGGAAAA--GAAAGAAGAAGTAAAAATAGAAGTGAC--C-AA 692
Query 717 AACGATTACTCAAGTTGTGGAGTATAAAGAGATAGTAAAAGTTGAGGGCCAAAAAGATAA 776
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 693 AACGATTACTCAAGTTGTGGAATTTAAAGAGAAAGTAAAAGTTGAGGGCCAAAAAGATAA 752
Query 777 AGATGGAAACATACCTTACTTTGTCCACTACGTATACGCTCCACAATTGTTCAGTGATGA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 AGATGGAAACATACCTTACTTTGTCCACTACGTATACGCTCCACAATTGTTCAGTGATGA 812
Query 837 AAACCCTAATGCTTGTCGCATTGTCTAG 864
|||||||||||||||| |||||||||||
Sbjct 813 AAACCCTAATGCTTGTTGCATTGTCTAG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5