BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29010.1
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473105 jgi|Araly1|473105|fgenesh2_kg.1__3059__AT1G29010.1 1448 0.0
Ahg933996 jgi|Araly1|933996|scaffold_401984.1 73.1 4e-12
> Ahg473105 jgi|Araly1|473105|fgenesh2_kg.1__3059__AT1G29010.1
Length=1010
Score = 1448 bits (784), Expect = 0.0
Identities = 942/1016 (93%), Gaps = 19/1016 (2%)
Strand=Plus/Plus
Query 1 ATGTGTAGTAAGACGAGTAGTGTAAGTTATGGAAACAGAG-A-A-GATGATGAT-A--AT 54
||||||||||| |||||||||||||||||||||||||||| | | ||||||||| | ||
Sbjct 1 ATGTGTAGTAAAACGAGTAGTGTAAGTTATGGAAACAGAGAAGATGATGATGATGATGAT 60
Query 55 TACTC-GTCCTTGTGTCCGAAGAAACAGAAACATAATAATGGAGGaaaaaaaaGAGTCCC 113
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TACTCTGT-CTTGTGTCCGAAGAAACAGAAACATAATAATGGAGGAAGAAAAAGAGTCCC 119
Query 114 ACGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTCGGAGAACAACACATCTC 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTCGGAGAACAACACATCTC 179
Query 174 TACGGCCGCACCATTTACTCTTCATCATCCTCCTTCCCTGGAGAAGTCTCCAACCA-TCA 232
||||||||||||||| ||| || ||| |||||| |||||||||||||||||| || |||
Sbjct 180 CACGGCCGCACCATTTTCTCGTCCTCACCCTCCTCCCCTGGAGAAGTCTCCAA-CATTCA 238
Query 233 CTGACAGAACCGGTCTAGTTTACCCGTTTTCGTCTTATTTCTCTGC-CGGATCTTTCCCT 291
|||| ||||||||||| |||||||||||||||||||||||| |||| | |||||||||||
Sbjct 239 CTGATAGAACCGGTCTGGTTTACCCGTTTTCGTCTTATTTCACTGCTC-GATCTTTCCCT 297
Query 292 AGTGATTTGATTCCTCCGGCTCCAGTGTTTCAGAGGAAACATGATTCGTCTCTTCACTAC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTGATTTGATTCCTCCGGCTCCAGTGTTTCAGAGGAAACATGATTCGTCTCTTCACTAC 357
Query 352 CTCCCTCCGATGAATCTACCAAAACAAGGATCTGGAGGATTTTATCAGTTTATAGAGCCT 411
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 358 TTCCCTCCGATGAATCTACCAAATCAAGGATCTGGAGGATTTTATCAGTTTATAGATCCT 417
Query 412 CCTTCAAGCCAAACATCTTCTCTTGACAATGTCACTAAATTTCTAGATGAAGAAAAGATC 471
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 418 CCTTCAAGCCAAACATCTTGTCTTGACAATGTCACTCAATTTCTAGATGAAGAAAAGATC 477
Query 472 TCGTCTGCGAAAAGGCCATGGCATTTTATGGCAGATACCGCGAAATGTAGTGTTGGACCG 531
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 TCGGCTGCGAAAAGGCCATGGCATCTTATGGCAGATACCGCGAAATGTAGTGTTGGACCG 537
Query 532 AGC-ACAACTATCTCAAGAGATGCTAAACAAACCAGATCACTAGACCTAAGATTGAAAAA 590
| | | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 A-CTATAACTAGCTCAAGAGATGCTAAACAAATCAGATCACTAGACCTAAGATTGAAAAG 596
Query 591 TCATGTCCAAGATTCAGGAACCACAATAAGAAATCCAATCACTATTGATTCTCCTTCTTC 650
|||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 597 TCATATTCAAGATTCAGGAACCACAATTAGGAATCCAATCACTATTGATTCTCCTTCTTC 656
Query 651 AGCCAGTCCTCCTACAACGATATTTGCAAATCCGTC-ACTCGGTTTCCCGCGCTTTTTAC 709
||||| | |||||||||||| ||| | ||| ||| ||||| |||||||||||||||||
Sbjct 657 AGCCACTGTTCCTACAACGATTTTTCCTAATT-GTCCACTCGATTTCCCGCGCTTTTTAC 715
Query 710 AGAAAGAAGAGGATGATCATGAAATTATACAACGAAAGAGCGGTACAAATTTTCCTTTAA 769
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 716 AGAGAGAAGAGGATGATCATGAAATCATACAACGAAAGAGCGTTACAAATTTTCCCTTAA 775
Query 770 ACAAAAAACCATTCTACAGCTTCTTACCCGCGAATGACCAGATTATTCGCGACCAAGATC 829
||| ||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||
Sbjct 776 ACAGAAAACCATTCTACAGCTTCTTGCCCTCAAATGACCAGAGTATTCGCGACCAAGATC 835
Query 830 GATCATTCAGCTTGAGAACCGAGAGATATGACACAGTCCCTGATCATGGCATTGATCTTC 889
|||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 836 GATCCCTAAGCTTGAGAACAGAGAGATATGACACAGTCCCTGATCACGGCATTGATCTTC 895
Query 890 GCCTTAAGTTATAATAAG-TT-TTGTTCTAAGCAGTTTTCAAAACTTCGAATCTTTACAC 947
||||||||||||||||| || || ||||||||| |||||||||||| || ||||||| |
Sbjct 896 GCCTTAAGTTATAATAAAATTATT-TTCTAAGCAATTTTCAAAACTTTGAGTCTTTACTC 954
Query 948 CATGAGTTTGTAGTTTTGGATAAATATGTAACAAAAGATATGCCAAAGACTTGGAT 1003
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 955 CATGAGTTTGTAGTTTCGGATAAATATGTAACAAAAGATATGCCAAAGACTTGGAT 1010
> Ahg933996 jgi|Araly1|933996|scaffold_401984.1
Length=933
Score = 73.1 bits (39), Expect = 4e-12
Identities = 52/58 (90%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 98 GaaaaaaaaGAGTCCCACGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 155
|||| | || ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAAGACAA-AGTACGACGAAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37741687830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5