BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29025.1 Length=2106 Score E Sequences producing significant alignments: (Bits) Value Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958 2359 0.0 Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1 501 8e-141 > Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958 Length=3174 Score = 2359 bits (1277), Expect = 0.0 Identities = 1513/1625 (93%), Gaps = 23/1625 (1%) Strand=Plus/Plus Query 194 ATGGCACGTCTTACTCTGTTTCTGTCTTTTCTTTCTCTAGCTTTAGTCTCTGTTGTAAAC 253 |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 1 ATGGCAAGTCTTACTCTGTTTCTGTCTTTTCTTTCTCTAGCTTTAGTCTCGGCTGTGAAT 60 Query 254 TGTCGTGTTTTAAGTTCTGTGTCTGAAG-ATAACAACTCCTCCATCTTGGTCTCCGATGG 312 ||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| || Sbjct 61 TGTCGTGTTTTAAGTTCTGTGTCTG-AGTATAACAA---CTCGGTCTTGGTCTCCGACGG 116 Query 313 AGTCCAAGACAGATCCAGCAACGACTTTCTCAGTCTTAATCCGCCAAAT--C-TTTCCGA 369 | ||||||||||| |||||||||| |||||||||||| ||||||||||| | | ||| | Sbjct 117 AATCCAAGACAGAGCCAGCAACGAGTTTCTCAGTCTTGATCCGCCAAATCGCATCTCCAA 176 Query 370 GAGTGCTTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGACAATATTGAAGGATATGT 429 ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||| Sbjct 177 GAGTGCTTGTGTTCATGTCTACGGGTTTCTTCCCTGTGCAGATAATATTGGAGGTTATGT 236 Query 430 CTTCCAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAATACTTTTTGTCTAAAGG 489 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTTCCAAGTTTTCTCCTTTTGTTGTCTATTGATAATCGGTGAATACTTTTTGTCTAAAGG 296 Query 490 AAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGCGGAATTATCTTCCCTCT 549 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 297 AAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGTGGAATCATCTTCCCTCT 356 Query 550 ACTTACAATGTTCCCAAGAATTGCCCTTATTCTATCCACTGGACTGATAGGAAGCCGTGA 609 |||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || Sbjct 357 CCTTACAATGTTCCCAAGAATCGCCCTTATTCTATCGACTGGACTGATAGGAAGCAGCGA 416 Query 610 AATAGCAAACTCGATGACGGGTAATAATGTTGCAGTTACTGTTGGATACTCTGTCTTTGC 669 || |||||||||||| ||||||||| ||||||||||| || ||||||||||||||||| Sbjct 417 TATCGCAAACTCGATGGTGGGTAATAACGTTGCAGTTACCGTGGGATACTCTGTCTTTGC 476 Query 670 TTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTTTGAGATCAGATGA 729 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || Sbjct 477 TTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTGTGAG---AGAAGA 533 Query 730 TCAGTCCATAACTTGTGACATAA-GTAGTCCAAGAAGACAAGTTAAGAAGAGCATTAATC 788 ||| ||| |||||| ||||| || | ||||||||| |||||||||||| |||| |||| Sbjct 534 TCACTCCTTAACTTCTGACACAACG-AGTCCAAGACGACAAGTTAAGATGAGC---AATC 589 Query 789 TATTGAAGAACCTAGCTGGAGCTAGCATTAGAGCAGATCCTAAGAACAAGAAAGCGGCAG 848 || |||||||||| |||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 590 TACTGAAGAACCTTGCTGGAGCTAGCGTAAAAGCAGATCCTAAGAACAAGAAAGCGGCAG 649 Query 849 GGATTATGCTCCTGACTTTATTGCCTTTCGTCTTAGTCACATTTTCAGAGACATTTCACA 908 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 650 GGATTATGCTCCTAACTTTATTGCCTTTCGTCTTGGTCACATTTTCAGAGACATTTCAC- 708 Query 909 T-AAAATCTTGGGATGACAATATGGTTTTGGTCACACTCATATTCTCTGGTTCTGCAACT 967 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 709 TCAAAATCTTGGGATGACAATATGGTTTTGATCACACTCATATTCTCTGGTTCTGCAACT 768 Query 968 GTTCTCTACTTTGTTTATTTGTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAATAC 1027 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 769 GTTCTCTACTTTGTTTATTTGTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAACAC 828 Query 1028 GCGAAGTTTGAGCTCATGTCAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTCAAAGC 1087 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 GCGAGGTTTGAGCTCATGTCAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTCAAAGT 888 Query 1088 CTTATAAGAAATGGACAACTATGTCAAGAGAGCTTGAAAAGTTTGTTCAAAAAGTTTGAT 1147 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||| Sbjct 889 CTTATAAGAAATGGACAACTAAGTCGAGAGAGCTTGAAAAGTTTGTTCAAAAAATTCGAT 948 Query 1148 GTCAACAAAGACGGAAAGATCCAAGTATCAGAGTTAAAAGATCTGACAGTGGACTTTGGG 1207 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 949 GTCAACAAAGACGGAAAGATCCAAGTTTCAGAGTTAAAAGATCTGACGGTGGACTTTGGG 1008 Query 1208 GTATTAGGGAGAGTGAAGTGTGATATAAATGAGCTTGCCACTACTTTGCTTGCTGATTTC 1267 || ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 1009 GTGTTAGGGAGAGTGAAGTGTGATATAAATGAGCTTGCCACTTCATTGCTTGCAGATTTC 1068 Query 1268 GACAGTAATAGAGATGGTGAGATAGATGAGACTGAATTCGCCATTGGTATCGAAAAATGG 1327 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1069 GACAGTAATAGAGATGGTGAGATAGATGAGACTGAATTCACGATTGGTATCGAAAAATGG 1128 Query 1328 CTGAAACAGTACAAATTTAGCTTCAATGGCACCGAGTCAC-AAGGAGAGGACATAGCCGA 1386 ||||||||||||||||| ||||| || |||||||||||| ||| |||||||| ||| || Sbjct 1129 CTGAAACAGTACAAATTCGGCTTCGATAGCACCGAGTCACCAAG-AGAGGACAGAGCTGA 1187 Query 1387 GGATGATGGAGTTTTGAAGGTGGAACAATTACTAAAGGGATGTCTTTTTACTAAGTTGCT 1446 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1188 GGATGATGGAGTTTTGAAGGTGGAACAA---CTAAGGGGATGTCTTTTTACTAAGTTGCT 1244 Query 1447 TACAAAGAGAACCTTGAAAGCTGTCATTGAAGTCATTATAGGGATTACTATTGTCAGCTT 1506 ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| Sbjct 1245 TACAAAGAGAACCTTGAAAGCTGTCATAGAAGTCACTATAGGGATTACAATTGTCAGCTT 1304 Query 1507 TCTTGCAATGCCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAGTGCCTTC 1566 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1305 TCTTGCAATGCCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAATTCCTTC 1364 Query 1567 CTTCTATGTTGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGC 1626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 CTTCTATGTTGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGC 1424 Query 1627 TCACTTCTGTCGCAAGAAAGAGAAAGCAAAAATTACATCTGACACATTTTCTGAGATTTA 1686 ||||||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||| || Sbjct 1425 TCACTTCTGTCGCAAGAAAGACAAAGCGAGAATCACATCTGACACTTTTTCTGAGATATA 1484 Query 1687 TAGAGATGTTACATTGAACAATCTGCTGGGGATAACAATTATATTGGCGATTGTGTACAT 1746 ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| Sbjct 1485 CAGAGATGTTACATTGAATAATCTGTTGGGGACAACAATTATATTGGCGATTGTGTACAT 1544 Query 1747 CAGAGGATTGACTTGGGATTATTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCAT 1806 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1545 TAGAGGATTGACTTGGGATTACTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCTT 1604 Query 1807 AATAG 1811 ||||| Sbjct 1605 AATAG 1609 Score = 869 bits (470), Expect = 0.0 Identities = 790/942 (84%), Gaps = 31/942 (3%) Strand=Plus/Plus Query 988 GTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAAT-ACGCGAAGTTTGAGCTCATGT 1046 ||||||||||| ||| ||||||| ||||||| ||| || ||||| |||||||||||||| Sbjct 2214 GTATTTTGATAGAGCCGACCAAGAGAAGAGCTTAG-ATCTCGCGAGGTTTGAGCTCATGT 2272 Query 1047 CAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTC-AAAGCCTTATAAGAAATGGACAA 1105 ||||| |||||||||| || |||| |||||| || | |||||||||||||| |||||||| Sbjct 2273 CAGAATTTCATAAGCATTTACAGATTTTTTC-CCCCAAAAGCCTTATAAGAGATGGACAA 2331 Query 1106 CTATGTCAAGAGAGCTTGAAAAGTTTGTTCAAAAAG-TTTGATGTCAACAAAGACGGAAA 1164 ||| | |||||||||||||||| ||| || | || | ||||| |||||||| ||||| Sbjct 2332 CTAAATGAAGAGAGCTTGAAAAGGTTG-TCTGACAGAATCGATGTAAACAAAGATGGAAA 2390 Query 1165 GATCCAAGTATCAGAGTTAAAAGATCTGACAGTGGACTTTGGGGTATTAGGGAGAGTGAA 1224 ||||||||| |||||||| |||||||| || ||||| |||||| | ||||||||||| || Sbjct 2391 GATCCAAGTTTCAGAGTTGAAAGATCTTACGGTGGAGTTTGGGATGTTAGGGAGAGTCAA 2450 Query 1225 GTGTGATATAAATGAGCTTGCCACTACTTTGCTTGCTGATTTCGACAGTAATAGAGATGG 1284 |||| | ||| || |||||| |||||| ||| |||| ||||||||||| || ||||||| Sbjct 2451 GTGTCACATAGATAAGCTTGTCACTACATTGGTTGCCGATTTCGACAGGGATGGAGATGG 2510 Query 1285 TGAGATAGATG-AGACTGAATTCGCCATTGGTATCGAAAAATGGCTGAAACAGTACAAAT 1343 ||||||| ||| || |||||||| ||||| || ||||||||||||| |||||||||| Sbjct 2511 TGAGATAAATGAAG-CTGAATTCAAAATTGGGATTAAAAAATGGCTGAATCAGTACAAAT 2569 Query 1344 TTAGCTTCAATGGCACCGAGTCA-CAAGGAGAGGA-CATAGCCGAGGATG-ATGGAGTTT 1400 | |||||| || |||||| | || ||| | ||||| || ||| ||||| | || | | | Sbjct 2570 TCAGCTTCGATAGCACCGTGCCACCAA-GTGAGGACCA-AGCTGAGGA-GAATCCAATAT 2626 Query 1401 TGAAGGTGGAACAATTACTAAAGGGATGTCTTTTTACTAAGTTGCT-TACAAAGAGAACC 1459 ||||| | ||| || | ||||| | ||||| ||||||| || | | || || |||| Sbjct 2627 TGAAGATAGAA-AA--GCCAAAGGAAAGTCTTGCTACTAAGCTGGTCT-CATGGAAAACC 2682 Query 1460 TTGAAAGCTGTCATT-GAAGTCA-TTATAGGGATTACT-ATTGTCAGCTTTCTTGCAATG 1516 |||| ||||| | || ||||||| || |||||||| || |||||| || |||||||| | Sbjct 2683 TTGAGAGCTG-CCTTGGAAGTCACTT-TAGGGATT-CTAATTGTCCTCTATCTTGCAA-G 2738 Query 1517 -CCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAGTGCCTTCCTTCTATGT 1575 |||||||||||||| ||| | |||||||||| |||||||||||| |||||||||||||| Sbjct 2739 ACCTTTCATGATGAACATCCAGCTTTTGTCGGAATCAGCTGGAGTTCCTTCCTTCTATGT 2798 Query 1576 TGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGCTCACTTCTG 1635 |||||||| || || |||||||||||||||||||||| | | ||||| ||||||||||| Sbjct 2799 TGTCTTTGTAGCCATTCCTTTGGCAAGAAACCTAAAGAGCACCTTGTCAGCTCACTTCTG 2858 Query 1636 TCGCAAGAAAGAGAAAGCAAAAATTACATCTGACACATTTTCTGAGATTTATAGAGATGT 1695 |||||||||||| ||||||| ||| ||||||||||||||||||||||| || | |||||| Sbjct 2859 TCGCAAGAAAGACAAAGCAAGAATCACATCTGACACATTTTCTGAGATCTACAAAGATGT 2918 Query 1696 TACATTGAACAATCTGCTGGGGA-TAACAATTATATTGGCGATTGTGTACATC-AGAGGA 1753 |||| ||||||||||| | |||| | ||||||||||||| ||||||||| | |||| | Sbjct 2919 TACAATGAACAATCTGAT-GGGAGTTTCAATTATATTGGCAATTGTGTAC-GCAAGAGAA 2976 Query 1754 TTGACTTGGGATTATTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCATAATAGGT 1813 || | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 2977 TTAATTTGGGATTACACAACAGAAGTTCTCATTATTGTGATCGTTGTTCTCTTAATAGGC 3036 Query 1814 GTACCGGCCTATGTGAGATCGACTTATCCATTTTGGATATGTGTCTTGGCCTTTGCTCTC 1873 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3037 GTACCGGCTTATGTGAGATCGACTTATCCATTTTGGATATGTGTCTTGGCCTTTGCTCTC 3096 Query 1874 TACTTCTTCTCTCTTATCCTAATCTATCTCCATTCCAAGTCT 1915 |||||| |||||||| || || | ||| |||||| || |||| Sbjct 3097 TACTTCATCTCTCTTGTCGTAGTATATTTCCATTTCATGTCT 3138 Score = 483 bits (261), Expect = 3e-135 Identities = 414/486 (85%), Gaps = 18/486 (4%) Strand=Plus/Plus Query 240 TCTCTGTTGTAAACTGTCGTGTTTTAAGTTCTGTGTCTGAAGATAACAACTCCTCCATCT 299 |||||| ||| |||||||| |||||||||||| | |||| ||| || || ||| |||| Sbjct 1616 TCTCTGGTGTGAACTGTCGCGTTTTAAGTTCTTTATCTG-AGA-AA-AA---CTCGATCT 1669 Query 300 TGGTCTCCGATGGAGTCCAAGACAGATCCAGCAACGACTTTCTCAGTCTTAATCCGCCAA 359 || ||||||||||||| |||||| | |||||| |||| ||||| |||||| |||||| || Sbjct 1670 TGATCTCCGATGGAGTTCAAGACGGGTCCAGCTACGAGTTTCTGAGTCTTGATCCGCGAA 1729 Query 360 AT-----C-TTTCCGAGAGTGC-TTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGAC 412 || | || || ||| | | || | |||||||||||||||||||||||||||||| Sbjct 1730 ATGGCAGCATTACCAAGAAT-CAATGCATACATGTCTACGGGTTTCTTCCATGTGCAGAC 1788 Query 413 AATATTGAAGGATATGTCTTCCAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAA 472 ||| ||||||| ||| |||||||||||||||| |||||||| || ||||||||||||||| Sbjct 1789 AATGTTGAAGGTTATATCTTCCAAGTTTTCTCGTTTGGTTGCCTCTTGATAATCGGTGAA 1848 Query 473 TACTTTTTGTCTAAAGGAAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTT-TGG 531 ||||| ||| |||||||||||||||| |||||| ||||||||||||| ||||| || ||| Sbjct 1849 TACTTCTTGACTAAAGGAAGGTCTAACCTCTTTCTCATCTTCGAGGTGGGTTT-TTATGG 1907 Query 532 CGGAATTATCTTCCCTCTACTTACAATGTTCCCAAGAATTGCCCTTATTCTATCCACTGG 591 |||||| ||||||||||| ||||| ||||| |||||||| || |||||||| || ||||| Sbjct 1908 CGGAATCATCTTCCCTCTCCTTACGATGTTTCCAAGAATCGCGCTTATTCTCTCGACTGG 1967 Query 592 ACTGATAGGAAGCCGTGAAATAGCAAACTCGATGACGGGTAATAAT-GTTGCAGTTACTG 650 |||| | |||||||| ||||| |||| ||||| | ||||||| || ||| |||||||| Sbjct 1968 ACTGGTGGGAAGCCGCGAAATGGCAAGCTCGAGGGTGGGTAAT-ATCATTGGAGTTACTG 2026 Query 651 TTGGATACTCTGTCTTTGCTTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGT 710 | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 2027 TGGGATACTCTGTCTTTGCTTTGACAATGCAATGGGGAGCTTGTATTCTCTTTGGCTTGT 2086 Query 711 CTGGTT 716 |||||| Sbjct 2087 CTGGTT 2092 > Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1 Length=2000 Score = 501 bits (271), Expect = 8e-141 Identities = 733/945 (78%), Gaps = 76/945 (8%) Strand=Plus/Plus Query 374 GCTTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGACAATATTGAAGGATATGTCTTC 433 ||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||| Sbjct 317 GCTTGCATTCATGTCTACGGGTTCCTTCCATGTGCAGACAATATTGGAGGTTATGTCTTC 376 Query 434 CAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAATACTTT-TTGTCTAAAGGAAG 492 ||||||||||||||||| ||||| ||||| || ||||| || ||| |||||| ||||||| Sbjct 377 CAAGTTTTCTCCTTTGGCTGTCTTTTGATCATTGGTGACTA-TTTCTTGTCTGAAGGAAG 435 Query 493 GTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGCGGAATTATCTTCCCTCTACT 552 || || |||||| | || ||||||||||| |||| |||||| || ||||||||||| || Sbjct 436 ATCAAAACTCTTTCTAATATTCGAGGTCGGGTTCTATGGCGGTATCATCTTCCCTCTCCT 495 Query 553 TACAATGTTCCCAAGAATTGCCCTTATTCTATC-CACTGGACT-GATAG-GAAGC-CGTG 608 ||||||||||||||||||||||||||| |||| | ||||||| | ||| || | || | Sbjct 496 TACAATGTTCCCAAGAATTGCCCTTATGATATCGC-CTGGACTAG-TAGCGACCCACGAG 553 Query 609 AAATAGCAA--ACTCGAT-GACGGGTAATAATGTTGCAGTTACTGTTGGATACTCTGTCT 665 | || | | ||| | |||| || || |||| ||||||| | ||| || | | | Sbjct 554 GG-T-GCTCTTA-T-GATTG-CGGGAAACAACGTTGGAGTTACTATGGGACACACAATTT 608 Query 666 TTGCTTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTT-TGAGAT-C 723 ||||| |||||||||| ||||||||||||||||||||||| ||| | ||| | | || | Sbjct 609 TTGCTCTGACAATGCATTGGGGAGCTTGTGTTGTCTTTGGTTTGACCGGTCCT-A-ATTC 666 Query 724 AGATG-ATCAGTCCATAACTTG-TG-A-CATAAGTA--GTC-CAAGAAGACAA-GT-T-- 772 |||| |||| ||| || | | | || ||| | | | | || |||| | | Sbjct 667 AGATCCATCAATCCG-AAGAGGATCCATCAAAAGAACAGCCTCT-GAT-ACAAAGAATCC 723 Query 773 AAGAAGAGCATT--AATCTATTGAAGA-ACCTA----GC-T-G--GA-GCTAGCATTAGA 820 |||||| | ||| || || ||||| || || | | | || || ||| ||||| Sbjct 724 AAGAAGGGGATTTTAAAGGAT-GAAGATAC-TAAAAAGTGTTGTTGAAGCAAGC-TTAGA 780 Query 821 -GCAGATCCTAAGAACAAGAAAGCGGCAGGGATTATGCTCCTGACTTTA-TTGCC-TTTC 877 || |||||||||||||||||||| ||||||||||||||| ||||| || || || |||| Sbjct 781 TGCGGATCCTAAGAACAAGAAAGCTGCAGGGATTATGCTCTTGACTCTAGTT-CCATTTC 839 Query 878 GTCTTAGTCACATTTTCAGAGACATTTCACATAAAATCTTGG-GATGACAAT-ATGGTTT 935 ||||||| ||||| | || ||| | | |||||||| | ||| | | || | | Sbjct 840 -TCTTAGTGACATTGCCTGATTTATTGGATGCACAATCTTGGAG-TGATA-TCATTATGT 896 Query 936 TGGTCACACTCATATTCTCTGGTTCTGCAAC-TGTTCTCTACTTTGTTTATTTGTATTTT 994 || ||||||||||| ||||| ||||| |||| | || ||||||||||||| | ||||||| Sbjct 897 TGATCACACTCATAATCTCTTGTTCTTCAACCT-TTATCTACTTTGTTTACTCGTATTTT 955 Query 995 GATAAAGCGGACCAAGTGAAGAGCCTAGAAT-ACGCGAAGTTTGAGCTCATGTCAGAAGT 1053 |||| || |||||| ||||||| |||| | |||| ||||||||||||||||||||||| Sbjct 956 GATACGGCAGACCAAAAGAAGAGCTTAGA-TCACGCCAAGTTTGAGCTCATGTCAGAAGT 1014 Query 1054 TCATAAGCACTTGCAGAATTTTTCGCCTCAAAGCCTTATAAGAAATGGACAACTATGTCA 1113 ||||||||| ||||||| ||||||||||| || |||||| ||| | ||||||||| || | Sbjct 1015 TCATAAGCATTTGCAGAGTTTTTCGCCTCGAACCCTTATTAGAGACGGACAACTAAGTAA 1074 Query 1114 AGAGAGCTTGAAAAGTTTGTTC-A-AAAAGTTTGAT-GTCAACAAAGACGGAAAGATCCA 1170 ||| |||||||||||||||||| | |||| | ||| | |||||||| || ||||| || Sbjct 1075 AGAAAGCTTGAAAAGTTTGTTCGATAAAA-TC-GATAGG-AACAAAGATGGGAAGATTCA 1131 Query 1171 AGTATCAGAG-TTAAAAGATCTGA-CAGTGGACTTTGGGGTATTAGGGAG-AGTGAAGTG 1227 | | || ||| ||||| || || | |||| || ||||| || || || || | |||| || Sbjct 1132 AATCTCGGAGCTTAAA-GA-CTTAACAGTAGAGTTTGGAGTTTTTGGAAGGA-TGAAATG 1188 Query 1228 TGATATAAATGAGCTTGCCA-CTACTTTGCTTGCTGATTTCGACA 1271 ||| || |||||| |||| | | ||||| ||||| || ||||||| Sbjct 1189 TGACATCAATGAGTTTGCAAGC-ACTTTACTTGCGGAGTTCGACA 1232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79227709600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5