BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29025.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958 2359 0.0
Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1 501 8e-141
> Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958
Length=3174
Score = 2359 bits (1277), Expect = 0.0
Identities = 1513/1625 (93%), Gaps = 23/1625 (1%)
Strand=Plus/Plus
Query 194 ATGGCACGTCTTACTCTGTTTCTGTCTTTTCTTTCTCTAGCTTTAGTCTCTGTTGTAAAC 253
|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1 ATGGCAAGTCTTACTCTGTTTCTGTCTTTTCTTTCTCTAGCTTTAGTCTCGGCTGTGAAT 60
Query 254 TGTCGTGTTTTAAGTTCTGTGTCTGAAG-ATAACAACTCCTCCATCTTGGTCTCCGATGG 312
||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||
Sbjct 61 TGTCGTGTTTTAAGTTCTGTGTCTG-AGTATAACAA---CTCGGTCTTGGTCTCCGACGG 116
Query 313 AGTCCAAGACAGATCCAGCAACGACTTTCTCAGTCTTAATCCGCCAAAT--C-TTTCCGA 369
| ||||||||||| |||||||||| |||||||||||| ||||||||||| | | ||| |
Sbjct 117 AATCCAAGACAGAGCCAGCAACGAGTTTCTCAGTCTTGATCCGCCAAATCGCATCTCCAA 176
Query 370 GAGTGCTTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGACAATATTGAAGGATATGT 429
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||
Sbjct 177 GAGTGCTTGTGTTCATGTCTACGGGTTTCTTCCCTGTGCAGATAATATTGGAGGTTATGT 236
Query 430 CTTCCAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAATACTTTTTGTCTAAAGG 489
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTCCAAGTTTTCTCCTTTTGTTGTCTATTGATAATCGGTGAATACTTTTTGTCTAAAGG 296
Query 490 AAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGCGGAATTATCTTCCCTCT 549
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 297 AAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGTGGAATCATCTTCCCTCT 356
Query 550 ACTTACAATGTTCCCAAGAATTGCCCTTATTCTATCCACTGGACTGATAGGAAGCCGTGA 609
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||
Sbjct 357 CCTTACAATGTTCCCAAGAATCGCCCTTATTCTATCGACTGGACTGATAGGAAGCAGCGA 416
Query 610 AATAGCAAACTCGATGACGGGTAATAATGTTGCAGTTACTGTTGGATACTCTGTCTTTGC 669
|| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||
Sbjct 417 TATCGCAAACTCGATGGTGGGTAATAACGTTGCAGTTACCGTGGGATACTCTGTCTTTGC 476
Query 670 TTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTTTGAGATCAGATGA 729
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 477 TTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTGTGAG---AGAAGA 533
Query 730 TCAGTCCATAACTTGTGACATAA-GTAGTCCAAGAAGACAAGTTAAGAAGAGCATTAATC 788
||| ||| |||||| ||||| || | ||||||||| |||||||||||| |||| ||||
Sbjct 534 TCACTCCTTAACTTCTGACACAACG-AGTCCAAGACGACAAGTTAAGATGAGC---AATC 589
Query 789 TATTGAAGAACCTAGCTGGAGCTAGCATTAGAGCAGATCCTAAGAACAAGAAAGCGGCAG 848
|| |||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 590 TACTGAAGAACCTTGCTGGAGCTAGCGTAAAAGCAGATCCTAAGAACAAGAAAGCGGCAG 649
Query 849 GGATTATGCTCCTGACTTTATTGCCTTTCGTCTTAGTCACATTTTCAGAGACATTTCACA 908
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 650 GGATTATGCTCCTAACTTTATTGCCTTTCGTCTTGGTCACATTTTCAGAGACATTTCAC- 708
Query 909 T-AAAATCTTGGGATGACAATATGGTTTTGGTCACACTCATATTCTCTGGTTCTGCAACT 967
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 709 TCAAAATCTTGGGATGACAATATGGTTTTGATCACACTCATATTCTCTGGTTCTGCAACT 768
Query 968 GTTCTCTACTTTGTTTATTTGTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAATAC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 769 GTTCTCTACTTTGTTTATTTGTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAACAC 828
Query 1028 GCGAAGTTTGAGCTCATGTCAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTCAAAGC 1087
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GCGAGGTTTGAGCTCATGTCAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTCAAAGT 888
Query 1088 CTTATAAGAAATGGACAACTATGTCAAGAGAGCTTGAAAAGTTTGTTCAAAAAGTTTGAT 1147
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||
Sbjct 889 CTTATAAGAAATGGACAACTAAGTCGAGAGAGCTTGAAAAGTTTGTTCAAAAAATTCGAT 948
Query 1148 GTCAACAAAGACGGAAAGATCCAAGTATCAGAGTTAAAAGATCTGACAGTGGACTTTGGG 1207
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 949 GTCAACAAAGACGGAAAGATCCAAGTTTCAGAGTTAAAAGATCTGACGGTGGACTTTGGG 1008
Query 1208 GTATTAGGGAGAGTGAAGTGTGATATAAATGAGCTTGCCACTACTTTGCTTGCTGATTTC 1267
|| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1009 GTGTTAGGGAGAGTGAAGTGTGATATAAATGAGCTTGCCACTTCATTGCTTGCAGATTTC 1068
Query 1268 GACAGTAATAGAGATGGTGAGATAGATGAGACTGAATTCGCCATTGGTATCGAAAAATGG 1327
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1069 GACAGTAATAGAGATGGTGAGATAGATGAGACTGAATTCACGATTGGTATCGAAAAATGG 1128
Query 1328 CTGAAACAGTACAAATTTAGCTTCAATGGCACCGAGTCAC-AAGGAGAGGACATAGCCGA 1386
||||||||||||||||| ||||| || |||||||||||| ||| |||||||| ||| ||
Sbjct 1129 CTGAAACAGTACAAATTCGGCTTCGATAGCACCGAGTCACCAAG-AGAGGACAGAGCTGA 1187
Query 1387 GGATGATGGAGTTTTGAAGGTGGAACAATTACTAAAGGGATGTCTTTTTACTAAGTTGCT 1446
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1188 GGATGATGGAGTTTTGAAGGTGGAACAA---CTAAGGGGATGTCTTTTTACTAAGTTGCT 1244
Query 1447 TACAAAGAGAACCTTGAAAGCTGTCATTGAAGTCATTATAGGGATTACTATTGTCAGCTT 1506
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 1245 TACAAAGAGAACCTTGAAAGCTGTCATAGAAGTCACTATAGGGATTACAATTGTCAGCTT 1304
Query 1507 TCTTGCAATGCCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAGTGCCTTC 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1305 TCTTGCAATGCCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAATTCCTTC 1364
Query 1567 CTTCTATGTTGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGC 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CTTCTATGTTGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGC 1424
Query 1627 TCACTTCTGTCGCAAGAAAGAGAAAGCAAAAATTACATCTGACACATTTTCTGAGATTTA 1686
||||||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||| ||
Sbjct 1425 TCACTTCTGTCGCAAGAAAGACAAAGCGAGAATCACATCTGACACTTTTTCTGAGATATA 1484
Query 1687 TAGAGATGTTACATTGAACAATCTGCTGGGGATAACAATTATATTGGCGATTGTGTACAT 1746
||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct 1485 CAGAGATGTTACATTGAATAATCTGTTGGGGACAACAATTATATTGGCGATTGTGTACAT 1544
Query 1747 CAGAGGATTGACTTGGGATTATTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCAT 1806
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1545 TAGAGGATTGACTTGGGATTACTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCTT 1604
Query 1807 AATAG 1811
|||||
Sbjct 1605 AATAG 1609
Score = 869 bits (470), Expect = 0.0
Identities = 790/942 (84%), Gaps = 31/942 (3%)
Strand=Plus/Plus
Query 988 GTATTTTGATAAAGCGGACCAAGTGAAGAGCCTAGAAT-ACGCGAAGTTTGAGCTCATGT 1046
||||||||||| ||| ||||||| ||||||| ||| || ||||| ||||||||||||||
Sbjct 2214 GTATTTTGATAGAGCCGACCAAGAGAAGAGCTTAG-ATCTCGCGAGGTTTGAGCTCATGT 2272
Query 1047 CAGAAGTTCATAAGCACTTGCAGAATTTTTCGCCTC-AAAGCCTTATAAGAAATGGACAA 1105
||||| |||||||||| || |||| |||||| || | |||||||||||||| ||||||||
Sbjct 2273 CAGAATTTCATAAGCATTTACAGATTTTTTC-CCCCAAAAGCCTTATAAGAGATGGACAA 2331
Query 1106 CTATGTCAAGAGAGCTTGAAAAGTTTGTTCAAAAAG-TTTGATGTCAACAAAGACGGAAA 1164
||| | |||||||||||||||| ||| || | || | ||||| |||||||| |||||
Sbjct 2332 CTAAATGAAGAGAGCTTGAAAAGGTTG-TCTGACAGAATCGATGTAAACAAAGATGGAAA 2390
Query 1165 GATCCAAGTATCAGAGTTAAAAGATCTGACAGTGGACTTTGGGGTATTAGGGAGAGTGAA 1224
||||||||| |||||||| |||||||| || ||||| |||||| | ||||||||||| ||
Sbjct 2391 GATCCAAGTTTCAGAGTTGAAAGATCTTACGGTGGAGTTTGGGATGTTAGGGAGAGTCAA 2450
Query 1225 GTGTGATATAAATGAGCTTGCCACTACTTTGCTTGCTGATTTCGACAGTAATAGAGATGG 1284
|||| | ||| || |||||| |||||| ||| |||| ||||||||||| || |||||||
Sbjct 2451 GTGTCACATAGATAAGCTTGTCACTACATTGGTTGCCGATTTCGACAGGGATGGAGATGG 2510
Query 1285 TGAGATAGATG-AGACTGAATTCGCCATTGGTATCGAAAAATGGCTGAAACAGTACAAAT 1343
||||||| ||| || |||||||| ||||| || ||||||||||||| ||||||||||
Sbjct 2511 TGAGATAAATGAAG-CTGAATTCAAAATTGGGATTAAAAAATGGCTGAATCAGTACAAAT 2569
Query 1344 TTAGCTTCAATGGCACCGAGTCA-CAAGGAGAGGA-CATAGCCGAGGATG-ATGGAGTTT 1400
| |||||| || |||||| | || ||| | ||||| || ||| ||||| | || | | |
Sbjct 2570 TCAGCTTCGATAGCACCGTGCCACCAA-GTGAGGACCA-AGCTGAGGA-GAATCCAATAT 2626
Query 1401 TGAAGGTGGAACAATTACTAAAGGGATGTCTTTTTACTAAGTTGCT-TACAAAGAGAACC 1459
||||| | ||| || | ||||| | ||||| ||||||| || | | || || ||||
Sbjct 2627 TGAAGATAGAA-AA--GCCAAAGGAAAGTCTTGCTACTAAGCTGGTCT-CATGGAAAACC 2682
Query 1460 TTGAAAGCTGTCATT-GAAGTCA-TTATAGGGATTACT-ATTGTCAGCTTTCTTGCAATG 1516
|||| ||||| | || ||||||| || |||||||| || |||||| || |||||||| |
Sbjct 2683 TTGAGAGCTG-CCTTGGAAGTCACTT-TAGGGATT-CTAATTGTCCTCTATCTTGCAA-G 2738
Query 1517 -CCTTTCATGATGAATATCGAACTTTTGTCGGTATCAGCTGGAGTGCCTTCCTTCTATGT 1575
|||||||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||
Sbjct 2739 ACCTTTCATGATGAACATCCAGCTTTTGTCGGAATCAGCTGGAGTTCCTTCCTTCTATGT 2798
Query 1576 TGTCTTTGCAGTGATCCCTTTGGCAAGAAACCTAAAGAACGCTTTGTCTGCTCACTTCTG 1635
|||||||| || || |||||||||||||||||||||| | | ||||| |||||||||||
Sbjct 2799 TGTCTTTGTAGCCATTCCTTTGGCAAGAAACCTAAAGAGCACCTTGTCAGCTCACTTCTG 2858
Query 1636 TCGCAAGAAAGAGAAAGCAAAAATTACATCTGACACATTTTCTGAGATTTATAGAGATGT 1695
|||||||||||| ||||||| ||| ||||||||||||||||||||||| || | ||||||
Sbjct 2859 TCGCAAGAAAGACAAAGCAAGAATCACATCTGACACATTTTCTGAGATCTACAAAGATGT 2918
Query 1696 TACATTGAACAATCTGCTGGGGA-TAACAATTATATTGGCGATTGTGTACATC-AGAGGA 1753
|||| ||||||||||| | |||| | ||||||||||||| ||||||||| | |||| |
Sbjct 2919 TACAATGAACAATCTGAT-GGGAGTTTCAATTATATTGGCAATTGTGTAC-GCAAGAGAA 2976
Query 1754 TTGACTTGGGATTATTCAACAGAAGTTCTCATTATTGTGATCGTTGGTCTCATAATAGGT 1813
|| | ||||||||| |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2977 TTAATTTGGGATTACACAACAGAAGTTCTCATTATTGTGATCGTTGTTCTCTTAATAGGC 3036
Query 1814 GTACCGGCCTATGTGAGATCGACTTATCCATTTTGGATATGTGTCTTGGCCTTTGCTCTC 1873
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3037 GTACCGGCTTATGTGAGATCGACTTATCCATTTTGGATATGTGTCTTGGCCTTTGCTCTC 3096
Query 1874 TACTTCTTCTCTCTTATCCTAATCTATCTCCATTCCAAGTCT 1915
|||||| |||||||| || || | ||| |||||| || ||||
Sbjct 3097 TACTTCATCTCTCTTGTCGTAGTATATTTCCATTTCATGTCT 3138
Score = 483 bits (261), Expect = 3e-135
Identities = 414/486 (85%), Gaps = 18/486 (4%)
Strand=Plus/Plus
Query 240 TCTCTGTTGTAAACTGTCGTGTTTTAAGTTCTGTGTCTGAAGATAACAACTCCTCCATCT 299
|||||| ||| |||||||| |||||||||||| | |||| ||| || || ||| ||||
Sbjct 1616 TCTCTGGTGTGAACTGTCGCGTTTTAAGTTCTTTATCTG-AGA-AA-AA---CTCGATCT 1669
Query 300 TGGTCTCCGATGGAGTCCAAGACAGATCCAGCAACGACTTTCTCAGTCTTAATCCGCCAA 359
|| ||||||||||||| |||||| | |||||| |||| ||||| |||||| |||||| ||
Sbjct 1670 TGATCTCCGATGGAGTTCAAGACGGGTCCAGCTACGAGTTTCTGAGTCTTGATCCGCGAA 1729
Query 360 AT-----C-TTTCCGAGAGTGC-TTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGAC 412
|| | || || ||| | | || | ||||||||||||||||||||||||||||||
Sbjct 1730 ATGGCAGCATTACCAAGAAT-CAATGCATACATGTCTACGGGTTTCTTCCATGTGCAGAC 1788
Query 413 AATATTGAAGGATATGTCTTCCAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAA 472
||| ||||||| ||| |||||||||||||||| |||||||| || |||||||||||||||
Sbjct 1789 AATGTTGAAGGTTATATCTTCCAAGTTTTCTCGTTTGGTTGCCTCTTGATAATCGGTGAA 1848
Query 473 TACTTTTTGTCTAAAGGAAGGTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTT-TGG 531
||||| ||| |||||||||||||||| |||||| ||||||||||||| ||||| || |||
Sbjct 1849 TACTTCTTGACTAAAGGAAGGTCTAACCTCTTTCTCATCTTCGAGGTGGGTTT-TTATGG 1907
Query 532 CGGAATTATCTTCCCTCTACTTACAATGTTCCCAAGAATTGCCCTTATTCTATCCACTGG 591
|||||| ||||||||||| ||||| ||||| |||||||| || |||||||| || |||||
Sbjct 1908 CGGAATCATCTTCCCTCTCCTTACGATGTTTCCAAGAATCGCGCTTATTCTCTCGACTGG 1967
Query 592 ACTGATAGGAAGCCGTGAAATAGCAAACTCGATGACGGGTAATAAT-GTTGCAGTTACTG 650
|||| | |||||||| ||||| |||| ||||| | ||||||| || ||| ||||||||
Sbjct 1968 ACTGGTGGGAAGCCGCGAAATGGCAAGCTCGAGGGTGGGTAAT-ATCATTGGAGTTACTG 2026
Query 651 TTGGATACTCTGTCTTTGCTTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGT 710
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2027 TGGGATACTCTGTCTTTGCTTTGACAATGCAATGGGGAGCTTGTATTCTCTTTGGCTTGT 2086
Query 711 CTGGTT 716
||||||
Sbjct 2087 CTGGTT 2092
> Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1
Length=2000
Score = 501 bits (271), Expect = 8e-141
Identities = 733/945 (78%), Gaps = 76/945 (8%)
Strand=Plus/Plus
Query 374 GCTTGTGTTCATGTCTACGGGTTTCTTCCATGTGCAGACAATATTGAAGGATATGTCTTC 433
||||| |||||||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 317 GCTTGCATTCATGTCTACGGGTTCCTTCCATGTGCAGACAATATTGGAGGTTATGTCTTC 376
Query 434 CAAGTTTTCTCCTTTGGTTGTCTATTGATAATCGGTGAATACTTT-TTGTCTAAAGGAAG 492
||||||||||||||||| ||||| ||||| || ||||| || ||| |||||| |||||||
Sbjct 377 CAAGTTTTCTCCTTTGGCTGTCTTTTGATCATTGGTGACTA-TTTCTTGTCTGAAGGAAG 435
Query 493 GTCTAAGCTCTTTGTCATCTTCGAGGTCGGTTTCTTTGGCGGAATTATCTTCCCTCTACT 552
|| || |||||| | || ||||||||||| |||| |||||| || ||||||||||| ||
Sbjct 436 ATCAAAACTCTTTCTAATATTCGAGGTCGGGTTCTATGGCGGTATCATCTTCCCTCTCCT 495
Query 553 TACAATGTTCCCAAGAATTGCCCTTATTCTATC-CACTGGACT-GATAG-GAAGC-CGTG 608
||||||||||||||||||||||||||| |||| | ||||||| | ||| || | || |
Sbjct 496 TACAATGTTCCCAAGAATTGCCCTTATGATATCGC-CTGGACTAG-TAGCGACCCACGAG 553
Query 609 AAATAGCAA--ACTCGAT-GACGGGTAATAATGTTGCAGTTACTGTTGGATACTCTGTCT 665
| || | | ||| | |||| || || |||| ||||||| | ||| || | | |
Sbjct 554 GG-T-GCTCTTA-T-GATTG-CGGGAAACAACGTTGGAGTTACTATGGGACACACAATTT 608
Query 666 TTGCTTTGACAATGCAATGGGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTT-TGAGAT-C 723
||||| |||||||||| ||||||||||||||||||||||| ||| | ||| | | || |
Sbjct 609 TTGCTCTGACAATGCATTGGGGAGCTTGTGTTGTCTTTGGTTTGACCGGTCCT-A-ATTC 666
Query 724 AGATG-ATCAGTCCATAACTTG-TG-A-CATAAGTA--GTC-CAAGAAGACAA-GT-T-- 772
|||| |||| ||| || | | | || ||| | | | | || |||| | |
Sbjct 667 AGATCCATCAATCCG-AAGAGGATCCATCAAAAGAACAGCCTCT-GAT-ACAAAGAATCC 723
Query 773 AAGAAGAGCATT--AATCTATTGAAGA-ACCTA----GC-T-G--GA-GCTAGCATTAGA 820
|||||| | ||| || || ||||| || || | | | || || ||| |||||
Sbjct 724 AAGAAGGGGATTTTAAAGGAT-GAAGATAC-TAAAAAGTGTTGTTGAAGCAAGC-TTAGA 780
Query 821 -GCAGATCCTAAGAACAAGAAAGCGGCAGGGATTATGCTCCTGACTTTA-TTGCC-TTTC 877
|| |||||||||||||||||||| ||||||||||||||| ||||| || || || ||||
Sbjct 781 TGCGGATCCTAAGAACAAGAAAGCTGCAGGGATTATGCTCTTGACTCTAGTT-CCATTTC 839
Query 878 GTCTTAGTCACATTTTCAGAGACATTTCACATAAAATCTTGG-GATGACAAT-ATGGTTT 935
||||||| ||||| | || ||| | | |||||||| | ||| | | || | |
Sbjct 840 -TCTTAGTGACATTGCCTGATTTATTGGATGCACAATCTTGGAG-TGATA-TCATTATGT 896
Query 936 TGGTCACACTCATATTCTCTGGTTCTGCAAC-TGTTCTCTACTTTGTTTATTTGTATTTT 994
|| ||||||||||| ||||| ||||| |||| | || ||||||||||||| | |||||||
Sbjct 897 TGATCACACTCATAATCTCTTGTTCTTCAACCT-TTATCTACTTTGTTTACTCGTATTTT 955
Query 995 GATAAAGCGGACCAAGTGAAGAGCCTAGAAT-ACGCGAAGTTTGAGCTCATGTCAGAAGT 1053
|||| || |||||| ||||||| |||| | |||| |||||||||||||||||||||||
Sbjct 956 GATACGGCAGACCAAAAGAAGAGCTTAGA-TCACGCCAAGTTTGAGCTCATGTCAGAAGT 1014
Query 1054 TCATAAGCACTTGCAGAATTTTTCGCCTCAAAGCCTTATAAGAAATGGACAACTATGTCA 1113
||||||||| ||||||| ||||||||||| || |||||| ||| | ||||||||| || |
Sbjct 1015 TCATAAGCATTTGCAGAGTTTTTCGCCTCGAACCCTTATTAGAGACGGACAACTAAGTAA 1074
Query 1114 AGAGAGCTTGAAAAGTTTGTTC-A-AAAAGTTTGAT-GTCAACAAAGACGGAAAGATCCA 1170
||| |||||||||||||||||| | |||| | ||| | |||||||| || ||||| ||
Sbjct 1075 AGAAAGCTTGAAAAGTTTGTTCGATAAAA-TC-GATAGG-AACAAAGATGGGAAGATTCA 1131
Query 1171 AGTATCAGAG-TTAAAAGATCTGA-CAGTGGACTTTGGGGTATTAGGGAG-AGTGAAGTG 1227
| | || ||| ||||| || || | |||| || ||||| || || || || | |||| ||
Sbjct 1132 AATCTCGGAGCTTAAA-GA-CTTAACAGTAGAGTTTGGAGTTTTTGGAAGGA-TGAAATG 1188
Query 1228 TGATATAAATGAGCTTGCCA-CTACTTTGCTTGCTGATTTCGACA 1271
||| || |||||| |||| | | ||||| ||||| || |||||||
Sbjct 1189 TGACATCAATGAGTTTGCAAGC-ACTTTACTTGCGGAGTTCGACA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5