BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29030.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473107 jgi|Araly1|473107|fgenesh2_kg.1__3061__AT1G29030.1 2617 0.0
> Ahg473107 jgi|Araly1|473107|fgenesh2_kg.1__3061__AT1G29030.1
Length=1771
Score = 2617 bits (1417), Expect = 0.0
Identities = 1681/1804 (93%), Gaps = 35/1804 (2%)
Strand=Plus/Plus
Query 16 CTTGGACTGCTCTGCGAGAGAAC-ATATCAACCTTCTACACTCTTCCAAAATCGCCATCT 74
||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1 CTTGGCCTACTCTGCGAGAGAACTCTATCAACCTTGTACACTCTTCCAAAATCGCCATCT 60
Query 75 TTATCTAAAGCTCCCCGAAATGTCAGAACAGTATTCCGAAGATGCTAAACATATCGAGAA 134
| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TCATCTAGAGCTCTCCGGAATGTCAGAACAGTATTCCGAAGATGCTAAACATATAGAGAA 120
Query 135 GCTTTATGAGTTCGACGAGCGCTTGAGCGAGTCCACGGACAAGTCTCAGAATGTTCAAGA 194
||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 121 GCTTTATGAGTTCGACGAGCGTTTGAGCGAGTCTACGGACAAGTCTCAGAATTTTCAAGA 180
Query 195 CTATGAAGGGATTATTGAGTTGTCTAAGACGAACATCAAGACAAAGCAGCTTGGAGCTCA 254
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 181 CTATGAAGGGATTATCGAGTTGTCTAAGACAAACATCAAGACCAAGCAGCTTGGAGCACA 240
Query 255 ACTGATTCCACGCTACTTCAAGTTCTTCACAAGTCTCGCAACAGAAGCTTTTGATGCGTA 314
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 241 GCTGATTCCACGCTACTTCAAGTTCTTCACCAGTCTCGCAACAGAAGCTTTTGATGCTTA 300
Query 315 CTTGGATATATTCGACGAAGTTGAAGTCGGGGTACGAGTTCAAGCCATCCGCGGGCTTCC 374
| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATGGATATAATCGACGAAGTGGAAGTCGGGGTACGAGTTCAAGCCATCCGCGGGCTTCC 360
Query 375 ATTGTTCTGCAAGGATACTCCTGATTTTATATCTAAGATAATTGATGTTCTTGTACAATG 434
| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 361 ACTGTTCTGCAAGGATACACCTGAGTTTATATCGAAGATAATTGATGTTCTTGTACAATG 420
Query 435 TCTAAATACTGAGGAATTTGTGGAGCGTGATGCTGTGCACAAGGC-TCTTATGTCATTAT 493
|||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||
Sbjct 421 TCTAAATACTGAGGAATTGGTGGAGCGTGATGCTGTACACAAGGCAT-TTATGTCATTAT 479
Query 494 TTCGGCAAGATACTAAGGCATCTTTGACTGCATTGTTTAAGCACACTGAGGCCACTCTTA 553
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TTCGGCAGGATACAAAGGCATCTTTGACTGCATTGTTTAAGCATACTGAGGCCACTCTTA 539
Query 554 GTACTGATGAGCAAATCCGTGAAAAGGTCTTACACTTTATTAGAGATAAGGTGTTCCCTC 613
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 GTGCTGATGAGCAAATCCGTGAAAAGGTCTTACACTTTATCAGAGATAAGGTGTTCCCTC 599
Query 614 TTAAAGGGGAACTGTTAAAGCCTCAACAGGAAATGGAAAGACATATAACCGATTTAATCA 673
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 600 TTAAAGGGGAACTGTTAAAGCCTCAAGAGGAAATGGAAAGACATATAACTGATTTGATCA 659
Query 674 AAAAGAGCCTAGGGGATGTAACTGGAGAAGAGTTCAATATGTTTATGGATTTCCTGAAAA 733
||||| ||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||
Sbjct 660 AAAAGGGCCTAGGGGATGTAACTGGAGAAGAATTCAATATGTTTATGGGTTTCTTGACAA 719
Query 734 GTTTGAGTATATTTGGAGGGAAAGCTCCTCAAGAAAGAATGCAAGAACTTGTAGAAATTA 793
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTTGAGTATATTTGGAGGAAAAGCTCCTCAAGAAAGAATGCAAGAACTTGTAGAAATTG 779
Query 794 TTGAAGGACAGGCTGATTTGGATTCAGAGTTTAATGTTTCAGATACAGATCATATTGACA 853
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 TTGAAGGACAGGCCGATTTGGATTCACAGTTTAATGTTTCAGATACAGATCATATTGACA 839
Query 854 GGTTTATATCATGCCTGCAAACGGCCCTTCCATTCTTTGCAAGAGGTGCTCCAGGTAGCA 913
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 840 GGTTTATATCATGCCTGCAAACAGCTCTTCCATTCTTTGCGAGAGGTGCTCCAGGTAGCA 899
Query 914 AGTTTCTTAACTACTTGAACAAGAATATCATGCCTGCTTTTGACCAGCTGCCAGAGGAGA 973
||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 900 AGTTTCTTAGCTACTTGAACAAGAATATCATTCCTGATTTTGACAAGCTGCCAGAGGAGA 959
Query 974 GGAAGCTTAATTTACTCAGAGCTCTTGCTGAGATGTCCCCATACACAACAGCTCAGGTAG 1033
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GGAAGCTTAATTTGCTCAGAGCTCTTGCTGAGATGTCGCCATACACAACAGCTCAGGTAG 1019
Query 1034 CACGTCAGATACTTCCATCAATAGTTCAGCTCTTAAAGAAGTACATGCCTGCTAGGAAAA 1093
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1020 CACGTCAGATGCTTCCCTCAATTGTTCAGCTCTTAAAGAAGTACATGCCTGCTAGGAAGA 1079
Query 1094 CTGGGGAAGAAATGAACTTCACATATGTCGAGTGCCTGTTATACGTGCTACATCATTTGG 1153
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1080 CTGGGGAAGAAATGAACTTCACATATGTCGAGTGCCTATTATACGTGCTTCATCATTTGG 1139
Query 1154 CGCACAAGGCTCCAAATGCAACAAACAGCTTGTGCGGCTACAAGATAGTGACTGGGCAGC 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1140 CGCACAAGGCTCCAAATGCAACAAACAGCTTGTGCGGCTACAAGATAGTGACCGGTCAGC 1199
Query 1214 CATCAGATAGACTCGGGGAGGACTTCTCAGAGTTCAACAAGGAATTCACTGAGAGATTGA 1273
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1200 CATCAGATAGACTCGGGGAGGACTTCTCAGAGTTTTACAAGGAATTCACTGAGAGATTAA 1259
Query 1274 CCAGTGTTGAGGATCTAACGAAGGCAACAATGAAAAAACTTACTCAAGGAATGTCTGAGC 1333
||||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1260 CCAGTGTTGAGGATCTAACCAAGGCAACAATGAAAAAACTAACTCAAGGGATGACTGAGC 1319
Query 1334 ACAGCAAAGCCATGTCGACTGCTAAGACAGATGAAGAGAAGTCAATCGTGAAAACGAAGA 1393
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1320 ACAGCAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAAGTCAAGGGTGAAAACGAAGA 1379
Query 1394 AGCAGAGTACAACAACTGGACTCAGGACCTGCAATAACATATTGGCAATGACAAAGGGAT 1453
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGCAGAGTGCAACAACTGGACTCAGGACCTGCAATAACATATTGGCAATGACAAAGGGAT 1439
Query 1454 TGCATGCAAAAGCGCCTTCATTTATCGGAAACACCAGTGTTACTCTTTCTTGGAAAGAAC 1513
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 TGCACGCAAAAGCGCCTTCATTTATCGGAGACACCAGTGTTACTCTTTCTTGGAAAGAA- 1498
Query 1514 CCACGAAAGTGACGAAACCGTTAGCCTCTACAACGACTGGAGGAAAACGGCCTGCAAATG 1573
| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1499 ----G----TCACGAAACCGTTAGCCTCTACAACGACTGGAGGAAAACGGCCTGCATATG 1550
Query 1574 GAGCCGGTAATAACGTGGGTGCAAAAAAGGCTCGTGTGCAGAATCAACAACAGGTTGTGA 1633
||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1551 GAGCCGGTAATAATGTGGGTGCAAAGAAGGCTCGTGTGCAGAATCATCA---GGTTGTGA 1607
Query 1634 ACAAAAGATCTGAGGGAATCTCACACGGTGGTGGTAGAGGCAGTCACAGAGGCCGAGGCC 1693
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1608 ACAAAACATCTGAGGGAATCTCATACGGTGGTGGTAGAGGCAGTCACAGAGGCCGAGGCC 1667
Query 1694 GGGGCCAAGGTCAGGGAAGACACAGTGGTGGTGGTGGCGGCCGTGGCCGTGGAAGAAGAG 1753
| | ||||||||||||||| | | |||||||||| | |||| ||||||||
Sbjct 1668 G-----A-GGTCAGGGAAGACAC-G-G-TGGTGGTGGC--C-GTGG------AAGAAGAG 1709
Query 1754 GCTTCTGGTAATTTCAAAGGATTCTCCATGACACTCTTTTTTGTCTGTTCTTGTATAACA 1813
||| |||||||||||||||| ||||| ||||||| |||||| | ||||||||||||||
Sbjct 1710 GCTACTGGTAATTTCAAAGGGTTCTCTATGACACA-TTTTTTC-CGGTTCTTGTATAACA 1767
Query 1814 GAGT 1817
||||
Sbjct 1768 GAGT 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5