BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29040.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313572 jgi|Araly1|313572|fgenesh1_pm.C_scaffold_1002352 691 0.0
> Ahg313572 jgi|Araly1|313572|fgenesh1_pm.C_scaffold_1002352
Length=1026
Score = 691 bits (374), Expect = 0.0
Identities = 561/643 (87%), Gaps = 45/643 (7%)
Strand=Plus/Plus
Query 837 TCCGCGGGAAAGTTTTCCCTCCTTAAACCTAGAAATAGCTCTTA-AGCATAAGCA-AA-- 892
|||||||||||||||| |||||||||||||| ||| || | ||| ||| |||||| ||
Sbjct 405 TCCGCGGGAAAGTTTTGCCTCCTTAAACCTA-AAA-AG-TTTTATAGC-TAAGCATAAGT 460
Query 893 ---ACATACATGTGAAA-C-----aaaaaaaaaaaa--tgcagaggaaaatgaaagggaa 941
| |||||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct 461 TTTATATACATGTGAAACCAAAAAAAAAAAAAAAAACTTGCAGA--AAAATGAAAGGGAA 518
Query 942 aaagaaaaaCATTGGTTCGATTTTCGAAG-ATTGCAATGTATCTGCGTCTCAGGAGATTT 1000
||| || ||| |||||||||||| || || || |||||||||||||||||||| |||
Sbjct 519 TAAG---AAGATTAGTTCGATTTTCG-AGAATCGCCATGTATCTGCGTCTCAGGAGGTTT 574
Query 1001 ATCTACAGCGATGCGGTTTTGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCCTCCG 1060
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 575 ATCTACAGCGATGCGGCTTCGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCTTCCG 634
Query 1061 TCGGAGTCTCACCGCCACCGTTAAACGACGGAATTCCATATCAGCGTTCATCCGGTGATT 1120
||||||||| || ||||||||||||||||||||| ||| ||||||||| |||| |||||
Sbjct 635 CCGGAGTCTCGCCACCACCGTTAAACGACGGAATTGCATCTCAGCGTTCGTCCGATGATT 694
Query 1121 CGGATACGGATAAGGATAGTGTAATCGGCTCGGGTAACGATGCGGTGGAGAGTCAGGCGA 1180
||| | | | ||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 695 CGG--A--G--ACGGATAGTGTAATCGGTTCGGGTCACTATGCGGTGGAGAGTCAGGCGA 748
Query 1181 TTCGATGCGTCACTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 1240
|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTAGATTAGTCTCTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 808
Query 1241 ATCC-GACGGTTGAGGTTTCGGCGGAG-A-A-GCAGAGTGATGTTCCTCTGGAATCTGCA 1296
|||| | |||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 809 ATCCAG-CGGTTGAGGTTTTGGCGGAGGATAAGCAGAGTGATGTTCCTCTGGAATCTGCA 867
Query 1297 GCGAAGAAGGAAGGTGGAGGAAAGAAACTTAAGATTCCTTTAAGGGAAGTTGTGAAAGCC 1356
|||||| | ||| | ||||||||| ||||||||||||||| || || ||||| ||||||
Sbjct 868 GCGAAG--G-AAGATAGAGGAAAGAGACTTAAGATTCCTTTGAGAGATGTTGTAAAAGCC 924
Query 1357 ATAGTTATGAATTCGA-GAAACACAGAGGAAGAAGAAG---ACAAAGAGATTGAGAAGAT 1412
|| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 925 ATTGTTATGAATTCGAAGAA-CACAGAGGAAGAAGAAGCTGACAAAGAGATTAAGAAGAT 983
Query 1413 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1455
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1026
Score = 320 bits (173), Expect = 2e-86
Identities = 247/281 (88%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 52 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCATATCTGCGCTGAGCTTCGTCTCCGTCAA 111
||||||||||||||||||||||||||||||| ||||||| | || || | | ||||||
Sbjct 1 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCTTATCTGCCCCGA---TC-T-T-CGTCAA 54
Query 112 TCTCCGTCGTGTTTAACAATCTCTTCTTCGCGGCCAAAATT-TCTCTCTTCCCGTAGTAA 170
|||||||||| ||| | |||||||||||||| ||| | || ||||||||||||||||||
Sbjct 55 TCTCCGTCGTATTTGAGAATCTCTTCTTCGCCGCC-ACTTTCTCTCTCTTCCCGTAGTAA 113
Query 171 GCAGTTC-TCTCTCGACCA-TTTTCCTCAGATCTCACGTCCGATCAAAGTCATCGCGAGA 228
| ||| |||| | |||| |||| |||| |||||||| ||||||||||||| |||||||
Sbjct 114 G-TCTTCTTCTCCCCACCAGTTTT-CTCAAATCTCACGCCCGATCAAAGTCACCGCGAGA 171
Query 229 AGCGCCATGGAGACGACGGCGGAGACAATTACCGGCGGTGTTCCCAACAACACGATGAAG 288
|||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 172 AGCGCCATGGAGACGACGGCGGAGACCATTTCCGGCGGTGTTCCCAACAATACAATGAAG 231
Query 289 TTATTGTTCGTTGAGATGGGTGTCGGTTACGATCAGCACGG 329
|||||||||||||||||||||||||||| |||||||||||
Sbjct 232 CTATTGTTCGTTGAGATGGGTGTCGGTTATGATCAGCACGG 272
Score = 206 bits (111), Expect = 5e-52
Identities = 113/114 (99%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 406 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 351
Query 466 CATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAT 519
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 352 CATTCTCTTCACCAGCAGCTGGATTTGGAGAAGGTTAAGTCTATCTTCCCATAT 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5