BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29040.1 Length=1592 Score E Sequences producing significant alignments: (Bits) Value Ahg313572 jgi|Araly1|313572|fgenesh1_pm.C_scaffold_1002352 691 0.0 > Ahg313572 jgi|Araly1|313572|fgenesh1_pm.C_scaffold_1002352 Length=1026 Score = 691 bits (374), Expect = 0.0 Identities = 561/643 (87%), Gaps = 45/643 (7%) Strand=Plus/Plus Query 837 TCCGCGGGAAAGTTTTCCCTCCTTAAACCTAGAAATAGCTCTTA-AGCATAAGCA-AA-- 892 |||||||||||||||| |||||||||||||| ||| || | ||| ||| |||||| || Sbjct 405 TCCGCGGGAAAGTTTTGCCTCCTTAAACCTA-AAA-AG-TTTTATAGC-TAAGCATAAGT 460 Query 893 ---ACATACATGTGAAA-C-----aaaaaaaaaaaa--tgcagaggaaaatgaaagggaa 941 | |||||||||||| | |||||||||||| |||||| |||||||||||||| Sbjct 461 TTTATATACATGTGAAACCAAAAAAAAAAAAAAAAACTTGCAGA--AAAATGAAAGGGAA 518 Query 942 aaagaaaaaCATTGGTTCGATTTTCGAAG-ATTGCAATGTATCTGCGTCTCAGGAGATTT 1000 ||| || ||| |||||||||||| || || || |||||||||||||||||||| ||| Sbjct 519 TAAG---AAGATTAGTTCGATTTTCG-AGAATCGCCATGTATCTGCGTCTCAGGAGGTTT 574 Query 1001 ATCTACAGCGATGCGGTTTTGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCCTCCG 1060 |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct 575 ATCTACAGCGATGCGGCTTCGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCTTCCG 634 Query 1061 TCGGAGTCTCACCGCCACCGTTAAACGACGGAATTCCATATCAGCGTTCATCCGGTGATT 1120 ||||||||| || ||||||||||||||||||||| ||| ||||||||| |||| ||||| Sbjct 635 CCGGAGTCTCGCCACCACCGTTAAACGACGGAATTGCATCTCAGCGTTCGTCCGATGATT 694 Query 1121 CGGATACGGATAAGGATAGTGTAATCGGCTCGGGTAACGATGCGGTGGAGAGTCAGGCGA 1180 ||| | | | ||||||||||||||| |||||| || ||||||||||||||||||||| Sbjct 695 CGG--A--G--ACGGATAGTGTAATCGGTTCGGGTCACTATGCGGTGGAGAGTCAGGCGA 748 Query 1181 TTCGATGCGTCACTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 1240 || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 TTAGATTAGTCTCTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 808 Query 1241 ATCC-GACGGTTGAGGTTTCGGCGGAG-A-A-GCAGAGTGATGTTCCTCTGGAATCTGCA 1296 |||| | |||||||||||| ||||||| | | |||||||||||||||||||||||||||| Sbjct 809 ATCCAG-CGGTTGAGGTTTTGGCGGAGGATAAGCAGAGTGATGTTCCTCTGGAATCTGCA 867 Query 1297 GCGAAGAAGGAAGGTGGAGGAAAGAAACTTAAGATTCCTTTAAGGGAAGTTGTGAAAGCC 1356 |||||| | ||| | ||||||||| ||||||||||||||| || || ||||| |||||| Sbjct 868 GCGAAG--G-AAGATAGAGGAAAGAGACTTAAGATTCCTTTGAGAGATGTTGTAAAAGCC 924 Query 1357 ATAGTTATGAATTCGA-GAAACACAGAGGAAGAAGAAG---ACAAAGAGATTGAGAAGAT 1412 || ||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 925 ATTGTTATGAATTCGAAGAA-CACAGAGGAAGAAGAAGCTGACAAAGAGATTAAGAAGAT 983 Query 1413 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1455 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1026 Score = 320 bits (173), Expect = 2e-86 Identities = 247/281 (88%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 52 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCATATCTGCGCTGAGCTTCGTCTCCGTCAA 111 ||||||||||||||||||||||||||||||| ||||||| | || || | | |||||| Sbjct 1 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCTTATCTGCCCCGA---TC-T-T-CGTCAA 54 Query 112 TCTCCGTCGTGTTTAACAATCTCTTCTTCGCGGCCAAAATT-TCTCTCTTCCCGTAGTAA 170 |||||||||| ||| | |||||||||||||| ||| | || |||||||||||||||||| Sbjct 55 TCTCCGTCGTATTTGAGAATCTCTTCTTCGCCGCC-ACTTTCTCTCTCTTCCCGTAGTAA 113 Query 171 GCAGTTC-TCTCTCGACCA-TTTTCCTCAGATCTCACGTCCGATCAAAGTCATCGCGAGA 228 | ||| |||| | |||| |||| |||| |||||||| ||||||||||||| ||||||| Sbjct 114 G-TCTTCTTCTCCCCACCAGTTTT-CTCAAATCTCACGCCCGATCAAAGTCACCGCGAGA 171 Query 229 AGCGCCATGGAGACGACGGCGGAGACAATTACCGGCGGTGTTCCCAACAACACGATGAAG 288 |||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||| Sbjct 172 AGCGCCATGGAGACGACGGCGGAGACCATTTCCGGCGGTGTTCCCAACAATACAATGAAG 231 Query 289 TTATTGTTCGTTGAGATGGGTGTCGGTTACGATCAGCACGG 329 |||||||||||||||||||||||||||| ||||||||||| Sbjct 232 CTATTGTTCGTTGAGATGGGTGTCGGTTATGATCAGCACGG 272 Score = 206 bits (111), Expect = 5e-52 Identities = 113/114 (99%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 406 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 351 Query 466 CATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAT 519 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 352 CATTCTCTTCACCAGCAGCTGGATTTGGAGAAGGTTAAGTCTATCTTCCCATAT 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59649323670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5