BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29050.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473111 jgi|Araly1|473111|fgenesh2_kg.1__3065__AT1G29050.1 2200 0.0
> Ahg473111 jgi|Araly1|473111|fgenesh2_kg.1__3065__AT1G29050.1
Length=1415
Score = 2200 bits (1191), Expect = 0.0
Identities = 1346/1420 (95%), Gaps = 14/1420 (1%)
Strand=Plus/Plus
Query 3 TATATGTATGTACATGCATTAGTGCATATATACATACACAAATGAGTGTATAAAAGCTTG 62
||||| |||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 TATATATATGTATATGCATTGGTGCATATATACATAGACAAATGGGTGTATAAAAGCTTG 60
Query 63 AACCCATCGAACAAGCTTCATCACAAAAACCCAAAACCTTTGATATTTGTCTAATTTTAC 122
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 61 AACCCATCAAACAAGCTTCATCACAAAAACCCAAAACCTTTGATATTTGTTTAA-TACAA 119
Query 123 AAAGATGGGTTTCAAACTCATCTCTCTCCTCCTTCTTTTTCTTCCACTTCTAACAGTCAC 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AAAGATGGGTTTCAAACTCATCTCTCTCCTCCTCCTTTTTCTTCCACTTCTAACAGTCAC 179
Query 183 AATCTTGTCGGGAGTCGAGCAGGCCTTTGCTTCCGACAAGGCACTCCTCGTGACCGGCCG 242
||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||| |
Sbjct 180 AATCTTGTCGGGAACCGAGCAAGCCTTCGCTTCCGACAAGACACTCCTCGTGACCGGCAG 239
Query 243 CAACATCACGGCTGACGGTGGAAGGTCGTCACTGAGAGGGAAGAAGCAGAGGAGAGCATC 302
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 240 CAACAGCACGGCTGACGGTGGAATGTCGTCACTGAGAGGGAAGAAACAGAGGAGAGCATC 299
Query 303 AGGATGTAACTTGTTCCAAGGCCGATGGGTGTTCGATGCTTCTTACCCTTTCTATGACTC 362
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 300 AGGATGTAACTTGTTCCAAGGTCGATGGGTGTTCGATGCTTCTTACCCTTTCTATGATTC 359
Query 363 GTCCAAGTGTCCTTTCATCGACGGCGAGTTTGACTGTCTCAAGTTCGGCCGACCAGACAA 422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCCACGTGTCCTTTCATCGACGGCGAGTTTGACTGTCTCAAGTTCGGCCGACCAGACAA 419
Query 423 ACAGTTCCTCAAGTACTCTTGGCAACCTGAATCTTGCACCATCCCAAGGTTCGACGGTGG 482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGTTCCTCAAGTACTCTTGGCAACCTGAATCTTGCACCATCCCAAGGTTCGACGGTGG 479
Query 483 GGCATTTCTGAGGAAATACAGAGGAAAACGAGTCATGTTCGTCGGAGACTCACTGAGTTT 542
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GGCGTTTCTGAGGAAATACAGAGGGAAACGAGTCATGTTCGTCGGAGACTCACTGAGTTT 539
Query 543 AAACATGTGGGAATCGTTGGCCTGTATGATCCATGCGTCGGTACCAAACGCCAAGACCAC 602
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 540 AAACATGTGGGAATCGTTGGCCTGTATGATACATGCGTCGCTACCAAACGCCAAGACCAC 599
Query 603 TTTTCTCAAGCGTACCCCACTCTCTACTCTCACTTTCCAGGAATATGGAGTAACGTTATA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 TTTTCTCAAGCGTACCCCACTCTCTACTCTCACTTTCCAGGAATATGGAGTAACGTTACA 659
Query 663 TCTATATAGAACACCATACATAGTAGATATATCCAAAGAGAGAGTTGGGCGTGTGCTTAA 722
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 CCTATATAGAACACCATACATAGTGGATATATCCAAAGAGAGAGTAGGGCGTGTGCTTAA 719
Query 723 CCTTGGAGCTATTGAAGGAGGTGCTGATGCTTGGAAAAACATGGACGTTCTTGTCTTCAA 782
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 CCTTGGAGCTATTGAAGGAGGTGCTAATGCTTGGAAAAACATGGACGTTCTTGTCTTCAA 779
Query 783 CTCTTGGCATTGGTGGACTCACAAAGGCCAATCTCAAGGGTGGGATTATATTAGAGATGG 842
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTTGGCATTGGTGGACTCATAAAGGCCAATCTCAAGGGTGGGATTATATTAGAGATGG 839
Query 843 GTCGTCTTTGGTGAGAGACATGAACCGTCTTGACGCTTTCTACAAAGGACTCAGTACTTG 902
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GTCGTCTTTGGTGAGAGACATGAACCGTCTTGATGCTTTCTACAAAGGACTCAGTACTTG 899
Query 903 GGCTCGATGGGTTGATCAAAACGTCGATACGGCCAAAACTCGAGTTTTCTTCCAAGGCAT 962
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 GGCTAGATGGGTTGATCAAAACGTCGATACTACCAAAACTCGAGTTTTCTTCCAAGGCAT 959
Query 963 TTCTCCCACTCATTACGAGGGAAGGGAATGGAACGAGCCGAGGAAGACTTGTAGTGGGCA 1022
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 960 TTCTCCCACTCATTACGAGGGAAGGGAATGGAACGAGCCAAGGAAGAGTTGTAGTGGGCA 1019
Query 1023 AATGCAGCCGTTGGGTGGATCAAGTTACCCAAGTGGTCAGCCTCCATCCT-CAGGAGTAG 1081
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
Sbjct 1020 AATGCAGCCGTTGGGTGGATCAAGTTACCCAAGTGGTCAGCCTCCATC-TGCGGGAGTTG 1078
Query 1082 TGTCGAAAGTGTTGAGTTCGATGAAAAAGCCAGTGACCTTGCTCGATATCACAACTTTGT 1141
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TGTCCAAAGTGTTGAATTCGATGAAAAAGCCAGTGACCTTGCTCGATATCACCACTTTGT 1138
Query 1142 CTCAGTTGAGAAAAGATGCTCATCCTTCTTCTTATGGTGGCGATGGAGGAACAGATTGCA 1201
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1139 CCCAGTTGAGAAAAGATGCTCATCCTTCTTCTTACGGTGGCAATGGAGGAACAGATTGCA 1198
Query 1202 GCCATTGGTGCCTCCCAGGGTTGCCTGATACATGGAACCAACTTCTCTACGCAGCTCTTA 1261
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1199 GCCATTGGTGCCTCCCCGGGTTGCCAGATACTTGGAACCAACTTCTCTACGCAGCCCTTA 1258
Query 1262 CGATGTGAAGTGTTAAGA-T-ACTA--A-AAAGAAAGTGCATAACACCTTTATTCTGTAA 1316
| ||||||||| | |||| | || | | |||||||||||||||||||||||||||||||
Sbjct 1259 CAATGTGAAGTAT-AAGAATCACAACTATAAAGAAAGTGCATAACACCTTTATTCTGTAA 1317
Query 1317 ATGACATTCGTAAATC-TTCTAGTGTTGTGTGATGCTATAGAAAACA-GATTTATAA-CA 1373
|||||||||||||||| || |||||||||||||||| |||||||| | |||| | || ||
Sbjct 1318 ATGACATTCGTAAATCGTT-TAGTGTTGTGTGATGCAATAGAAAAAAAGATTCAAAAACA 1376
Query 1374 AAAGAGACATTCTCAGTATAAAATAACACATTGGTTTGGT 1413
|||||||||||||||||||||| |||||||||| ||||||
Sbjct 1377 AAAGAGACATTCTCAGTATAAA-TAACACATTGATTTGGT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5