BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29060.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921939 jgi|Araly1|921939|scaffold_103220.1 667 0.0
Ahg355343 jgi|Araly1|355343|fgenesh1_pg.C_scaffold_7002516 571 2e-162
Ahg336024 jgi|Araly1|336024|fgenesh1_pg.C_scaffold_1002589 204 1e-51
> Ahg921939 jgi|Araly1|921939|scaffold_103220.1
Length=457
Score = 667 bits (361), Expect = 0.0
Identities = 400/418 (96%), Gaps = 6/418 (1%)
Strand=Plus/Plus
Query 178 GCGGTGCGGGTGGTTCTCTATACGGCGGAGCTGATCCGTATAGATCTAGAGAAGGGCTAA 237
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 45 GCGGTGCGGGTGGTTCTCTATACGGCGGAGCTGATCCTTATAGATCCAGAGAAGGGCTTA 104
Query 238 GCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGATCCTATGCACTCTG 297
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 105 GCACTAGAAATGCTTCAGGTTCAGAGGAAATCCAGCTGAGGATTGATCCGATGCACTCTG 164
Query 298 ACCTGGATGATGAGATTC-TAGGTCTCCATGGCCAAGTCAGGCAATTGAAAAATATTGCT 356
|||| |||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 165 ACCTTGATGATGAGA-TCATAGGTCTCCATGGCCAAGTCAGGCAATTGAAGAATATTGCT 223
Query 357 CAAGAAATTGGGTCAGAAGCAAAGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CAAGAAATTGGGTCAGAAGCAAAGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACA 283
Query 417 TTGATCAGAGCGCAAGCAGGGGTGAAGAACAACATAAGGAAACTGAACCTAAGCATAATC 476
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 284 TTGATCAGAGCGCAAGCTGGGGTGAAGAACAACATAAGGAAACTGAACATGAGCATAATC 343
Query 477 CGTAGTGGTAACAACCACATAATGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATC 536
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 344 CGTAGTGGCAACAACCACATCATGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATC 403
Query 537 CTCTACATGTGGTCCAAGATGTTCAAAAGATAGATAGAGAGACTCATGGCATACTTGT 594
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 404 CTCTACATGTGGTCCAAGATGTTCAAAAGATAGA--GAGA--CTCATGGCATACTTGT 457
> Ahg355343 jgi|Araly1|355343|fgenesh1_pg.C_scaffold_7002516
Length=2181
Score = 571 bits (309), Expect = 2e-162
Identities = 391/429 (91%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 149 ATTAGATTTCGCGTCGATGGCGTCCAA---T--C----GCGGTGCGGGTGGTTCTCTATA 199
|||||||||||||||||||||||| || | | |||||||||||||||| || ||
Sbjct 1752 ATTAGATTTCGCGTCGATGGCGTCAAATCCTCACAGAGGCGGTGCGGGTGGTTCCCTTTA 1811
Query 200 CGGCGGAGCTGATCCGTATAGATCTAGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTC 259
||| ||||| | |||||| ||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 1812 CGGTGGAGCCGCTCCGTACAGATCCAGAGAAGGGCTTAGCACTAGAAATGCTGCAGGTTC 1871
Query 260 AGAGGAAATTCAGCTGAGGATTGATCCTATGCACTCTGACCTGGATGATGAGATTC-TAG 318
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 1872 AGAAGAAATCCAGCTGAGGATTGATCCGATGCACTCTGACCTGGATGATGAGA-TCACAG 1930
Query 319 GTCTCCATGGCCAAGTCAGGCAATTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCAA 378
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1931 GTCTCCATGGCCAAGTCAGGCAGTTGAAAAATATTGCTCAAGAAATTGGGTCAGAAGCTA 1990
Query 379 AGTCTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCGCAAGCAGGGG 438
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1991 AGTTTCAGAGGGACTTCTTAGATGAACTGCAAATGACATTGATCAGAGCACAAGCCGGGG 2050
Query 439 TGAAGAACAACATAAGGAAACTGAACCTAAGCATAATCCGTAGTGGTAACAACCACATAA 498
|||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||
Sbjct 2051 TGAAGAACAACATAAGGAAACTAAACATGAGCATAATCCGTAGTGGCAACAACCACATAA 2110
Query 499 TGCACGTAGTTCTTTTCGCGCTCCTCCTCTTCTTTATCCTCTACATGTGGTCCAAGATGT 558
||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2111 TGCACGTGGTTCTTTTTGCGCTCCTCGTCTTCTTTATTCTCTACATGTGGTCCAAGATGT 2170
Query 559 TCAAAAGAT 567
|||||||||
Sbjct 2171 TCAAAAGAT 2179
> Ahg336024 jgi|Araly1|336024|fgenesh1_pg.C_scaffold_1002589
Length=771
Score = 204 bits (110), Expect = 1e-51
Identities = 125/132 (95%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 225 AGAGAAGGGCTAAGCACTAGAAATGCTTCAGGTTCAGAGGAAATTCAGCTGAGGATTGAT 284
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 106 AGAGAAGGGCTTAGCACTAGAAATGCTTCAGGTTCAGAGGAAGTCCAGCTGAGGATTGAT 165
Query 285 CCTATGCACTCTGACCTGGATGATGAGATTC-TAGGTCTCCATGGCCAAGTCAGGCAATT 343
||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||
Sbjct 166 CCTATGCACTCTGACCTTGATGATGAGAT-CATAGGTCTCCATGGCCAGGTCAGGCAATT 224
Query 344 GAAAAATATTGC 355
||||||||||||
Sbjct 225 GAAAAATATTGC 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5