BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29070.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473113 jgi|Araly1|473113|fgenesh2_kg.1__3067__AT1G29070.1 1002 0.0
> Ahg473113 jgi|Araly1|473113|fgenesh2_kg.1__3067__AT1G29070.1
Length=692
Score = 1002 bits (542), Expect = 0.0
Identities = 629/669 (94%), Gaps = 13/669 (2%)
Strand=Plus/Plus
Query 77 AAGAAGTGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTAGCTTCGGCTTCGTCGC 136
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAGAAGAGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTTGCTTCGGCTTCGTCGC 60
Query 137 GTTTATGGAATCCTGCTGCCTCCAACGGCAAGATTTGCGTTCCTTCTGCTTCGCTTTCTC 196
||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 GTTTATGGAATCCTGCTGCTTCCCACGGCATGATTTGCGTTCCTTCTGCTTCGCTTTCTC 120
Query 197 TGCGTACGGGTTGTAGACGGA-GT---TCGTC--CTCT-CTCACTTCTTCCGCTTCTTCG 249
|||||||||||| ||||| | | ||||| |||| ||||| |||||||||||||||
Sbjct 121 TGCGTACGGGTTCTAGAC-AATCTCCGTCGTCTTCTCTCCTCACCTCTTCCGCTTCTTCG 179
Query 250 CAATTGCTTCATTGCTCGTTTCTCTCGTCGCCTGTTTCCCTAGCGTCTCCATTTTCTGGT 309
|||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||
Sbjct 180 CAATTGCTTCATTGCTCGTTTCTCTCCTCACCTCTTTCCCTAGCGTCTCCGTTTTCTGGT 239
Query 310 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAATGGCCAGAGACGCAGA 369
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAACAGCCAGAGACGCAGA 299
Query 370 GGCCTTGTGGTTAGAGCTGGAAAAGCTGCTCTGTGTCAAACTAAGAGAAGCAGATCAAGA 429
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GGCCTTGTGGTGAGAGCTGGAAAAGCTGCTCTGTGTCAAACAAAGAGAAGCAGATCAAGA 359
Query 430 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGCGGTAGAGCA 489
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGTGGTAGAGCA 419
Query 490 ACCATAAAGCGTCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCATAAAGCGCCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 479
Query 550 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCACTCTATCTGTAATCTTGTTTCATG 609
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 480 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCAGTCTATCTGTAATCTTGTTTGATA 539
Query 610 TGCtt-ttttt---CCACCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 665
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCTTATTTTTATTCCGCCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 599
Query 666 GCGTTTTAACTCTCTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATTCATCA 725
| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GTGTTT-AACTCTTTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATCCATCA 658
Query 726 CATGTACTA 734
|| ||||||
Sbjct 659 CAAGTACTA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5