BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29080.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1 1476 0.0
Ahg921942 jgi|Araly1|921942|scaffold_103223.1 750 0.0
Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1 344 7e-94
> Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1
Length=1038
Score = 1476 bits (799), Expect = 0.0
Identities = 966/1046 (92%), Gaps = 13/1046 (1%)
Strand=Plus/Plus
Query 1 ATGGACTTCGTAGAGTTTGTGTGT-GTTGTTCTAACCATATTTTT-CATGGATCTAAAGA 58
|||| ||| ||||||||||||| | |||||| ||||||| ||||| ||||||||||||||
Sbjct 1 ATGGTCTTAGTAGAGTTTGTGT-TAGTTGTTTTAACCAT-TTTTTCCATGGATCTAAAGA 58
Query 59 TCTCTGAAGCTACATCTCGTGTCGCTTTGTACAAGCCATCATCCATTGTTGATTACCACC 118
|||| ||||| |||||||||||||||||| || ||||| | ||||| || |||||||||
Sbjct 59 TCTCCGAAGCCACATCTCGTGTCGCTTTGCACGAGCCA--A-CCATTTTTTATTACCACC 115
Query 119 AGCAATGGATGATTCAA-TTTTCTCGAGTTTATGACGATGAATTTGAGAAACAGTTGAGG 177
|| ||||||||| | || ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 116 AGAAATGGATGA-TAAATTTTTCTCGAGTTTATGATGATGAATTTGAGAAACAGATGAGG 174
Query 178 CTTCAAGTGCTCACGGAAAATTTGAAATTCATTGAGAGCTTCAATAATATGGGGAATCAA 237
||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 175 CTTGAAGTGTTCACGGAAAATTTGAAGTTCATTGAGAACTTCAATAATATGGGGAGTCAA 234
Query 238 AGCTACAAACTTGGTGTTAACGAGTTCACAGATTGGACTAAAGAGGAGTTCCTTGCCACC 297
||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 235 AGCTACAAACTTGGTGTCAACAAGTTCACGGATTGGACTAAAGAGGAGTTCCTTGCCACC 294
Query 298 TACACCGGTCTCAGAGGCGTTAATGTAACTTCACCATTCGAAGTGGTTAATGAAACGAAG 357
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct 295 CACACCGGTCTCAGTGGCATTAATGTAACTTCACCTTTCGAAGTGGTTAATGAAACGACG 354
Query 358 CCAGCTTGGAATTGGACCGTCAGTGATGTCCTTGGCACGAACAAAGATTGGAGAAACGAA 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 CCAGCTTGGAATTGGACCGTCAGTGATGTCCTTGGCACGACCAAAGATTGGAGAAACGAA 414
Query 418 GGAGCCGTAACACCTGTGAAATCCCAAGGAGAATGTGGAGGTTGTTGGGCATTCTCAGCG 477
||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 415 GGAGCTGTAACACCTGTTAAATACCAAGGAGAATGTGGAGGTTGTTGGGCGTTCTCAGCG 474
Query 478 ATAGCAGCGGTGGAAGGTCTGACAAAGATTGCCCGTGGAAACCTCATATCACTATCCGAA 537
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 ATAGCAGCGATGGAAGGTTTGACAAAGATTGCCCGTGGAAACCTCATATCACTATCTGAA 534
Query 538 CAACAACTTCTAGATTGCACCAGAGAGCAGAACAATGGTTGCAAGGGAGGAACATTTG-T 596
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 535 CAACAACTTCTAGATTGCGCCAGAGAGCAGAACAATGGTTGCAAGGGAGGAACA-ATGAT 593
Query 597 A-AATGCTTTCAACTACATAATTAAACACCGAGGCATTTCTTCAGAAAACGAATACCCTT 655
| || ||||||||||| ||| | ||| || ||||| ||||||||||||||| ||||||||
Sbjct 594 AGAA-GCTTTCAACTATATAGTAAAAAACGGAGGCGTTTCTTCAGAAAACGCATACCCTT 652
Query 656 ACCAAGTGAAAGAGGGCCCATGCCGGTCCAACGCTAGACCCGCCATACTAATCAGAGGGT 715
||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 653 ACCAAGTGAAAGAGGGCCCATGCCGGTCCAACGATATACCCGCCATAGTAATCAGAGGGT 712
Query 716 TCGAAAACGTTCCAAGCAACAACGAGCGTGCGTTACTCGAAGCCGTGTCAAGACAACCTG 775
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 713 TCGAAAACGTTCCAAGCAACAACGAACGTGCGTTACTCGAAGCCGTATCAAGACAACCTG 772
Query 776 TCGCAGTGGCCATTGATGCCAGTGAGGCCGGTTTCGTTCATTACTCTGGGGGAGTGTACA 835
||||||||| |||||| || |||||| | ||||| |||||||||| |||||||||||||
Sbjct 773 TCGCAGTGGACATTGACGCGAGTGAGACTGGTTTTATTCATTACTCAGGGGGAGTGTACA 832
Query 836 ATGCGCGGAACTGTGGGACTAGTGTAAATCATGCAGTGACGCTCGTTGGCTACGGCACGA 895
|||||||| ||||||||||||| || |||||||||||||| ||||||| ||||| ||||
Sbjct 833 ATGCGCGGGACTGTGGGACTAGCGTGAATCATGCAGTGACATTCGTTGGGTACGGTACGA 892
Query 896 GCCCGGAAGGGATGAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGA 955
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GCCAGGAAGGTATCAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGA 952
Query 956 ATGGTTACATTAGAATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTC 1015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ATGGTTACATTAGGATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTC 1012
Query 1016 AGTATGCTTCTTATCCGGTTGCGTAA 1041
||||||||||||||||||||||||||
Sbjct 1013 AGTATGCTTCTTATCCGGTTGCGTAA 1038
> Ahg921942 jgi|Araly1|921942|scaffold_103223.1
Length=1086
Score = 750 bits (406), Expect = 0.0
Identities = 838/1040 (81%), Gaps = 56/1040 (5%)
Strand=Plus/Plus
Query 30 TCTAACCATAT-TTTTCATGGA-TCT-AAAGATCTCTGAAGCTACATCTCGTGTCGCTTT 86
||||||||| | ||| ||| || ||| |||| ||||| |||| |||||||||||| | ||
Sbjct 55 TCTAACCAT-TCTTTCCAT-GAGTCTAAAAG-TCTCTCAAGCCACATCTCGTGTCACCTT 111
Query 87 GTACAAGCCATCATCCATTGTTGATTACCACCAGCAATGGATGATTCAATTTTCTCGAGT 146
|| ||||| || | ||| ||| |||| ||||||||||||| || || ||||||||
Sbjct 112 CCACGAGCCA--AT-CGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGT 168
Query 147 TTATGA-CGATGAATTTGAGAAACAGTTGAGGCTTCAAGTGCTCACGGAAAATTTGAAAT 205
|||| | |||||| | |||||||| |||| || | ||| ||| | |||| ||||| |
Sbjct 169 TTAT-AGCGATGAGCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAAACTTGAAGT 227
Query 206 TCATTGAGAGCTTCAATAA-TATGGGGAATCA-AAGC-TACAAACTTGGTGTTAACGAGT 262
||||||||| || || || | |||| || | || | ||||| |||||||| ||||| |
Sbjct 228 TCATTGAGAAATTTAACAAGAAAGGGG-AT-AGAA-CATACAAGCTTGGTGTCAACGAAT 284
Query 263 TCACAGATTGGACTAAAGAGGAGTTCCTTGCCACCTACACCGGTCTC-AGAGGCGTTAAT 321
| | |||||||| |||||||||||| |||||||| ||||||||||| || || ||||
Sbjct 285 TTGCGGATTGGACCAAAGAGGAGTTCATTGCCACCCACACCGGTCTCAAG-GGATTTAAC 343
Query 322 GTAACTTCACCAT--TC-GAAGTGGTTAATGAAACGA-AGCCAGCTTGGAATTGGACCGT 377
| || || |||| || ||| | || |||||| || | || |||||||||||| ||
Sbjct 344 GGAA-TT--CCATCCTCGGAATTTGTCGATGAAATGATA-CCTTCTTGGAATTGGAATGT 399
Query 378 CAGTGATGTC-CTTGGCAC-GA-A-CAAAGATTGGAGAAACGAAGGAGCCGTAACACCTG 433
|||||||||| | ||| | || | ||||||||||||| |||||||||| ||||||||||
Sbjct 400 CAGTGATGTCGC-CGGCCCTGAGATCAAAGATTGGAGATACGAAGGAGCTGTAACACCTG 458
Query 434 TGAAATCCCAAGGAGAATGTGGAGGTTGTTGGGCATTCTC-AGCGATAGCAGCGGTGGAA 492
| |||| |||||| |||||||| |||||||||| ||||| |||| | ||||||||||||
Sbjct 459 TTAAATACCAAGGCCAATGTGGATGTTGTTGGGCGTTCTCAAGCG-TCGCAGCGGTGGAA 517
Query 493 GGTCTGACAAAGATTGCCCGTGGAAACCTCA-TATCACTATCCGAACAACAACTTCTAGA 551
||| |||||||||||| | || ||||| | ||||| | || |||||||||||||||||
Sbjct 518 GGTTTGACAAAGATTGTTGGAGGCAACCT-AGTATCATTGTCTGAACAACAACTTCTAGA 576
Query 552 TTGC-ACCAGAGAGCAG-AACAATGGTTGCAAGGGAGGAACATTTGT-AAATGCTTTCAA 608
|||| | |||||||| | |||| |||||||| || |||| | ||| | | |||||||
Sbjct 577 TTGCGA-CAGAGAGC-GTGACAACGGTTGCAACGGTGGAATA-ATGTCAGACGCTTTCAG 633
Query 609 CTACATAATTAAACACCGAGGCATTTCTTCAGAAAACGA--ATACCCTTACCAAGTGAAA 666
||| ||||||||| ||||||||||| | |||| || | | |||||||||||||| || |
Sbjct 634 CTATATAATTAAAAACCGAGGCATTGCCTCAG-AAGC-ATCATACCCTTACCAAGCGACA 691
Query 667 GAGGGCCCATGCCGGTCCAACGCTAGACCCGCCATACT-AATCAGAGGGTTCGAAAACGT 725
||||| ||||||||| ||| || | |||| || || || ||||||||| | | |||
Sbjct 692 GAGGGGACATGCCGGTACAATGCAAAACCCTCC-GCCTGGATAAGAGGGTTCCAGACCGT 750
Query 726 TCCAAGCAACAACGAGCGTGCGTTACTCGAAGCCGTGTCAAGACAACCTGTCGCAGTGGC 785
||||||||||||||||||||| || ||||| || || || || || |||||| | ||| |
Sbjct 751 TCCAAGCAACAACGAGCGTGCATTGCTCGAGGCTGTATCGAGGCAGCCTGTCTCGGTGTC 810
Query 786 CATTGATGCCAGTGA-GG--CCGGTTTCGTTCATTACTCTGGGGGAGTGTACAATGCGCG 842
|||||| | | | || || |||||||| | |||||||| |||||||||||| ||| ||
Sbjct 811 CATTGACG-C-G-GATGGTCCCGGTTTCATGCATTACTCAGGGGGAGTGTACGATGAGCC 867
Query 843 GAACTGTGGGACTAGTGTAAATCATGCAGTGACGCTCGTTGGCTACGGCACGAGCCCGGA 902
| |||||||||| | || || ||||||||||| ||||||| ||||| ||||| |||||
Sbjct 868 GTACTGTGGGACCAACGTGAACCATGCAGTGACATTCGTTGGATACGGAACGAGTCCGGA 927
Query 903 AGGGATGAAGTACTGG-TTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGAATGGTT 961
|||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 928 AGGGATCAAGTACTGGCTT-GCTAAGAACTCTTGGGGTGAGACTTGGGGAGAGAATGGTT 986
Query 962 ACATTAGAATTCGTAGAGATGTGGAGTGGCCTCAAGGCATGTGTGGTGTAGCTCAGTATG 1021
||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 987 ACATTAGGATCCGTAGAGATGTGGCGTGGCCTCAAGGCATGTGTGGTGTGGCTCAGTATG 1046
Query 1022 CTTCTTATCCGGTTGCGTAA 1041
||| |||||||||||| |||
Sbjct 1047 CTTTTTATCCGGTTGCCTAA 1066
> Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1
Length=969
Score = 344 bits (186), Expect = 7e-94
Identities = 355/435 (82%), Gaps = 18/435 (4%)
Strand=Plus/Plus
Query 30 TCTAACCATAT-TTTTCATGGATCTAAAGATCTCTGAAGCTACATCTCGTGTCGCTTTGT 88
||||||||| | ||| ||||||||| | ||||||| |||| | | ||| |||| |||||
Sbjct 30 TCTAACCAT-TCTTTCCATGGATCTTAGGATCTCTCAAGCCAGACCTCATGTCACTTTGA 88
Query 89 ACAAGCCATCATCCATTGTTGATTACCACCAGCAATGGATGATTCAATTTTCTCGAGTTT 148
|| || || |||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 89 ACGAG-CA--ATCCATTGTTGATTACCACCAGCAATGGATGACTCAGTTCTCTCGAGTTT 145
Query 149 ATGACGATGAATTTGAGAAACAGTTGAGGCTTCAAGTGCTCACGGAAAATTTGAAATTCA 208
| | ||||||| |||||| | |||| ||||||||| ||| | |||| ||||||||||
Sbjct 146 ACCAGGATGAATCCGAGAAAGAAATGAGACTTCAAGTGTTCAAGAAAAACTTGAAATTCA 205
Query 209 TTGAGAGCTTCAATAATATGGGGAATCAAAGCTACAAACTTGGTGTTAACGAGTTCACAG 268
|||||| |||||||||||||||||| |||||||||| | ||||||| ||||||||||| |
Sbjct 206 TTGAGAACTTCAATAATATGGGGAACCAAAGCTACACAGTTGGTGTCAACGAGTTCACGG 265
Query 269 ATTGGACTAA-AGAGGAGTTCCTTGCCACCTACACCGGTCTCAGAGGCGTTAATGTAACT 327
||||||| || ||| ||||||||||||||| ||||||| ||| | |||||| ||||||
Sbjct 266 ATTGGAC-AATAGAAGAGTTCCTTGCCACCCACACCGGCCTCCG---CGTTAACGTAACT 321
Query 328 TCACCATTCGAAGTGGTTAATGAAACGAAGCCAGCTTGGAATTGGACCGTCAGTGATGTC 387
||| || |||| | |||||||||| | |||| | ||||||||| | | |||||| ||
Sbjct 322 ACACTATCCGAACTATTTAATGAAACTATGCCATCAAGGAATTGGAACATTAGTGATATC 381
Query 388 --CTTGG-C-ACGAA--CAAAGATTGGAGAAACGAAGGAGCCGTAACACCTGTGAAA-TC 440
| | | | ||||| |||||| |||||| |||||||||| |||| |||||| ||| |
Sbjct 382 GACATCGACGACGAAAGCAAAGACTGGAGAGACGAAGGAGCTGTAATACCTGTTAAAGTT 441
Query 441 CCAAGGAGAATGTGG 455
| |||||| ||||||
Sbjct 442 C-AAGGAGCATGTGG 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5