BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29090.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921942 jgi|Araly1|921942|scaffold_103223.1 1742 0.0
Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1 793 0.0
Ahg937726 jgi|Araly1|937726|scaffold_501917.1 82.4 7e-15
> Ahg921942 jgi|Araly1|921942|scaffold_103223.1
Length=1086
Score = 1742 bits (943), Expect = 0.0
Identities = 1037/1084 (96%), Gaps = 0/1084 (0%)
Strand=Plus/Plus
Query 70 GTGTGATTCTTTCATCAATAACAAAATGACATCGATATTATTCATGCTCGTGAGTCTAAC 129
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1 GTGTGATTCTTTCATCAATATCAAAATGACATCGATATTATTCATGTTTGTGAGTCTAAC 60
Query 130 AATTCTTTCCATGAATCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 189
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTCTTTCCATGAGTCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 120
Query 190 GATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTACAGTGACGA 249
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 121 AATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTATAGCGATGA 180
Query 250 GCTCGAGAAACAAATGAGATTCGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 309
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 240
Query 310 TAATAAGAAAGGGGATAGAACCTACAAGCTTGGTGTCAACGAGTTTGCGGATTGGACCAG 369
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 241 TAACAAGAAAGGGGATAGAACATACAAGCTTGGTGTCAACGAATTTGCGGATTGGACCAA 300
Query 370 AGAGGAATTCATTGCCACTCACACCGGCCTCAAGGGGGTTAACGGGATTCCATCCTCTGA 429
|||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||| ||
Sbjct 301 AGAGGAGTTCATTGCCACCCACACCGGTCTCAAGGGATTTAACGGAATTCCATCCTCGGA 360
Query 430 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCTGGCCGTGA 489
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 361 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCCGGCCCTGA 420
Query 490 GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 549
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 480
Query 550 ATGTTGTTGGGCATTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAAA 609
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGTTGTTGGGCGTTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAGG 540
Query 610 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 600
Query 670 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATCAAAAACCGAGGCATTGC 729
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATTAAAAACCGAGGCATTGC 660
Query 730 CTCAGAGGCATCATACCCTTACCAAGCGGCAGAGGGGACATGCCGGTACAATGGGAAACC 789
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 661 CTCAGAAGCATCATACCCTTACCAAGCGACAGAGGGGACATGCCGGTACAATGCAAAACC 720
Query 790 CTCCGCATGGATCAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 849
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCCGCCTGGATAAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 780
Query 850 GGCTGTATCCAAGCAGCCTGTCTCAGTGTCCATTGACGCGGATGGGCCCGGTTTCATGCA 909
||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 781 GGCTGTATCGAGGCAGCCTGTCTCGGTGTCCATTGACGCGGATGGTCCCGGTTTCATGCA 840
Query 910 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 900
Query 970 GTTCGTTGGATACGGAACGAGCCCAGAGGGGATCAAGTACTGGCTGGCTAAGAACTCGTG 1029
|||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||
Sbjct 901 ATTCGTTGGATACGGAACGAGTCCGGAAGGGATCAAGTACTGGCTTGCTAAGAACTCTTG 960
Query 1030 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCATGGCCTCA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCGTGGCCTCA 1020
Query 1090 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAACGGCAGACG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1021 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAATGGCAGATG 1080
Query 1150 ACTT 1153
||||
Sbjct 1081 ACTT 1084
> Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1
Length=1038
Score = 793 bits (429), Expect = 0.0
Identities = 842/1035 (81%), Gaps = 53/1035 (5%)
Strand=Plus/Plus
Query 126 TAACAATTCTTTCCATGAATCTAAAAG-TCTCTC-AAGCCACATCTCGTGTCACCTTCCA 183
|||| ||| |||||||| |||| |||| |||| | ||||||||||||||||| | || ||
Sbjct 32 TAACCATTTTTTCCATGGATCT-AAAGATCTC-CGAAGCCACATCTCGTGTCGCTTTGCA 89
Query 184 CGAGCCGATCGTTGCTGAACACCATCAGCAATGGATGACT-CGGTTCTCTCGAGTTTACA 242
|||||| | | || | | |||| ||| ||||||||| | || |||||||||||
Sbjct 90 CGAGCCAACCATTTTTTATTACCACCAGAAATGGATGA-TAAATTTTTCTCGAGTTTA-T 147
Query 243 G-TGACGAGCTCGAGAAACAAATGA-GATTCGATGTGTTCAAGAAAAACTTGAAGTTCAT 300
| ||| || | |||||||| |||| | || || ||||||| | |||| |||||||||||
Sbjct 148 GATGATGAATTTGAGAAACAGATGAGGCTT-GAAGTGTTCACGGAAAATTTGAAGTTCAT 206
Query 301 TGAGAAATTTAATAAGAAAGGGGA-T-AGAACCTACAAGCTTGGTGTCAACGAGTTTGCG 358
|||||| || ||||| | ||||| | | || |||||| |||||||||||| |||| ||
Sbjct 207 TGAGAACTTCAATAA-TATGGGGAGTCA-AAGCTACAAACTTGGTGTCAACAAGTTCACG 264
Query 359 GATTGGACCAGAGAGGAATTCATTGCCACTCACACCGGCCTCAAG-GGGGTTAACGGGA- 416
|||||||| | |||||| ||| ||||||| |||||||| ||| || || |||| | |
Sbjct 265 GATTGGACTAAAGAGGAGTTCCTTGCCACCCACACCGGTCTC-AGTGGCATTAATGTAAC 323
Query 417 TTCCATCCTCT-GAATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGAT 475
|| || ||| | ||| | || |||||| || || |||||||||||| |||||||||
Sbjct 324 TT-CA-CCTTTCGAAGTGGTTAATGAAACGACGCCAGCTTGGAATTGGACCGTCAGTGAT 381
Query 476 GTCGC-TGGCCGTGA-GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAAT 533
||| | ||| | | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 382 GTC-CTTGG-C---ACGACCAAAGATTGGAGAAACGAAGGAGCTGTAACACCTGTTAAAT 436
Query 534 ACCAAGGCCAATGTGGATGTTGTTGGGCATTCTCAAGCG-TCGCAGCGGTGGAAGGTTTG 592
||||||| |||||||| |||||||||| |||||| ||| | |||||| |||||||||||
Sbjct 437 ACCAAGGAGAATGTGGAGGTTGTTGGGCGTTCTCA-GCGATAGCAGCGATGGAAGGTTTG 495
Query 593 ACAAAGATTGT---TGGAAACAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGC 649
|||||||||| ||||||| | | ||||| | ||||||||||||||||||||||||
Sbjct 496 ACAAAGATTGCCCGTGGAAACCTC--A-TATCACTATCTGAACAACAACTTCTAGATTGC 552
Query 650 GACAGAGAGCGTGA-CAACGGTTGCAACGGTGGAATAATG-TCAGACGCTTTCAGCTATA 707
| |||||||| || ||| |||||||| || |||| |||| | ||| ||||||| |||||
Sbjct 553 GCCAGAGAGCA-GAACAATGGTTGCAAGGGAGGAACAATGAT-AGAAGCTTTCAACTATA 610
Query 708 TAATCAAAAACCGAGGCATTGCCTCAGAGG-CATCATACCCTTACCAAGCGGCAGAGGGG 766
|| | |||||| ||||| || | ||||| | ||||||||||||||| | ||||||
Sbjct 611 TAGTAAAAAACGGAGGCGTTTCTTCAGAAAACG-CATACCCTTACCAAGTGAAAGAGGGC 669
Query 767 ACATGCCGGTACAATGGGAAACCCTCCGCATGG-A-TCAGAGGGTTCCAGACCGTTCCAA 824
||||||||| ||| | | |||| || || | | ||||||||||| | | ||||||||
Sbjct 670 CCATGCCGGTCCAACGATATACCCGCC--ATAGTAATCAGAGGGTTCGAAAACGTTCCAA 727
Query 825 GCAACAACGAGCGTGCATTGCTCGAGGCTGTATCCAAG-CAGCCTGTCTCAGTGTCCATT 883
|||||||||| ||||| || ||||| || ||||| ||| || |||||| ||||| ||||
Sbjct 728 GCAACAACGAACGTGCGTTACTCGAAGCCGTATC-AAGACAACCTGTCGCAGTGGACATT 786
Query 884 GACGCG-GATGGGCCCGGTTTCATGCATTACTCAGGGGGAGTGTACGATGAGCCGTACTG 942
|||||| | || | | ||||| || ||||||||||||||||||||| ||| || | ||||
Sbjct 787 GACGCGAG-TGAGACTGGTTTTATTCATTACTCAGGGGGAGTGTACAATGCGCGGGACTG 845
Query 943 TGGGACCAACGTGAACCATGCAGTGACGTTCGTTGGATACGGAACGAGCCCAG-AGGGGA 1001
|||||| | |||||| ||||||||||| |||||||| ||||| ||||||| || | || |
Sbjct 846 TGGGACTAGCGTGAATCATGCAGTGACATTCGTTGGGTACGGTACGAGCC-AGGAAGGTA 904
Query 1002 TCAAGTACTGGCTGGCTAAGAACTCGTGGGGTGAGACTTGGGGAGAGAATGGTTACATTA 1061
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 905 TCAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGAATGGTTACATTA 964
Query 1062 GGATCCGTAGAGATGTGGCA-TGGCCTCAAGGCATGTGTGGTGTGGCTCAGTATGCTTTT 1120
|||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
Sbjct 965 GGATTCGTAGAGATGTGG-AGTGGCCTCAAGGCATGTGTGGTGTAGCTCAGTATGCTTCT 1023
Query 1121 TATCCGGTTGCCTAA 1135
||||||||||| |||
Sbjct 1024 TATCCGGTTGCGTAA 1038
> Ahg937726 jgi|Araly1|937726|scaffold_501917.1
Length=955
Score = 82.4 bits (44), Expect = 7e-15
Identities = 95/119 (80%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 486 GTGAGACCAAAGATTGGAGA-TACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAA 544
|||||| || ||||||||| | ||||| || || ||||| ||||| |||||||||||
Sbjct 337 GTGAGAGCATGGATTGGAGACT-GGAAGGGGCCGTTACACCCGTTAAGGACCAAGGCCAA 395
Query 545 TGTGGATGTTGTTGGGCATTCT-CAAGCG-TCGCAGCGGTGGAAGGTTTGACAAAGATT 601
||||||||||||||||| || | | ||| | || || |||||||| | |||||||||
Sbjct 396 TGTGGATGTTGTTGGGCTTT-TGCG-GCGGTGGCGGCTGTGGAAGGCGTAACAAAGATT 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5