BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29090.1 Length=1255 Score E Sequences producing significant alignments: (Bits) Value Ahg921942 jgi|Araly1|921942|scaffold_103223.1 1742 0.0 Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1 793 0.0 Ahg937726 jgi|Araly1|937726|scaffold_501917.1 82.4 7e-15 > Ahg921942 jgi|Araly1|921942|scaffold_103223.1 Length=1086 Score = 1742 bits (943), Expect = 0.0 Identities = 1037/1084 (96%), Gaps = 0/1084 (0%) Strand=Plus/Plus Query 70 GTGTGATTCTTTCATCAATAACAAAATGACATCGATATTATTCATGCTCGTGAGTCTAAC 129 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 1 GTGTGATTCTTTCATCAATATCAAAATGACATCGATATTATTCATGTTTGTGAGTCTAAC 60 Query 130 AATTCTTTCCATGAATCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 189 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CATTCTTTCCATGAGTCTAAAAGTCTCTCAAGCCACATCTCGTGTCACCTTCCACGAGCC 120 Query 190 GATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTACAGTGACGA 249 |||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 121 AATCGTTGCTGAACACCATCAGCAATGGATGACTCGGTTCTCTCGAGTTTATAGCGATGA 180 Query 250 GCTCGAGAAACAAATGAGATTCGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 309 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 GCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAAACTTGAAGTTCATTGAGAAATT 240 Query 310 TAATAAGAAAGGGGATAGAACCTACAAGCTTGGTGTCAACGAGTTTGCGGATTGGACCAG 369 ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 241 TAACAAGAAAGGGGATAGAACATACAAGCTTGGTGTCAACGAATTTGCGGATTGGACCAA 300 Query 370 AGAGGAATTCATTGCCACTCACACCGGCCTCAAGGGGGTTAACGGGATTCCATCCTCTGA 429 |||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||| || Sbjct 301 AGAGGAGTTCATTGCCACCCACACCGGTCTCAAGGGATTTAACGGAATTCCATCCTCGGA 360 Query 430 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCTGGCCGTGA 489 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 361 ATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGATGTCGCCGGCCCTGA 420 Query 490 GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 549 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAATGTGG 480 Query 550 ATGTTGTTGGGCATTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAAA 609 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATGTTGTTGGGCGTTCTCAAGCGTCGCAGCGGTGGAAGGTTTGACAAAGATTGTTGGAGG 540 Query 610 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGCGACAGAGAGCGTGACAACGG 600 Query 670 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATCAAAAACCGAGGCATTGC 729 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 601 TTGCAACGGTGGAATAATGTCAGACGCTTTCAGCTATATAATTAAAAACCGAGGCATTGC 660 Query 730 CTCAGAGGCATCATACCCTTACCAAGCGGCAGAGGGGACATGCCGGTACAATGGGAAACC 789 |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 661 CTCAGAAGCATCATACCCTTACCAAGCGACAGAGGGGACATGCCGGTACAATGCAAAACC 720 Query 790 CTCCGCATGGATCAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 849 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTCCGCCTGGATAAGAGGGTTCCAGACCGTTCCAAGCAACAACGAGCGTGCATTGCTCGA 780 Query 850 GGCTGTATCCAAGCAGCCTGTCTCAGTGTCCATTGACGCGGATGGGCCCGGTTTCATGCA 909 ||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 781 GGCTGTATCGAGGCAGCCTGTCTCGGTGTCCATTGACGCGGATGGTCCCGGTTTCATGCA 840 Query 910 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TTACTCAGGGGGAGTGTACGATGAGCCGTACTGTGGGACCAACGTGAACCATGCAGTGAC 900 Query 970 GTTCGTTGGATACGGAACGAGCCCAGAGGGGATCAAGTACTGGCTGGCTAAGAACTCGTG 1029 |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| || Sbjct 901 ATTCGTTGGATACGGAACGAGTCCGGAAGGGATCAAGTACTGGCTTGCTAAGAACTCTTG 960 Query 1030 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCATGGCCTCA 1089 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 961 GGGTGAGACTTGGGGAGAGAATGGTTACATTAGGATCCGTAGAGATGTGGCGTGGCCTCA 1020 Query 1090 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAACGGCAGACG 1149 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1021 AGGCATGTGTGGTGTGGCTCAGTATGCTTTTTATCCGGTTGCCTAACTAAATGGCAGATG 1080 Query 1150 ACTT 1153 |||| Sbjct 1081 ACTT 1084 > Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1 Length=1038 Score = 793 bits (429), Expect = 0.0 Identities = 842/1035 (81%), Gaps = 53/1035 (5%) Strand=Plus/Plus Query 126 TAACAATTCTTTCCATGAATCTAAAAG-TCTCTC-AAGCCACATCTCGTGTCACCTTCCA 183 |||| ||| |||||||| |||| |||| |||| | ||||||||||||||||| | || || Sbjct 32 TAACCATTTTTTCCATGGATCT-AAAGATCTC-CGAAGCCACATCTCGTGTCGCTTTGCA 89 Query 184 CGAGCCGATCGTTGCTGAACACCATCAGCAATGGATGACT-CGGTTCTCTCGAGTTTACA 242 |||||| | | || | | |||| ||| ||||||||| | || ||||||||||| Sbjct 90 CGAGCCAACCATTTTTTATTACCACCAGAAATGGATGA-TAAATTTTTCTCGAGTTTA-T 147 Query 243 G-TGACGAGCTCGAGAAACAAATGA-GATTCGATGTGTTCAAGAAAAACTTGAAGTTCAT 300 | ||| || | |||||||| |||| | || || ||||||| | |||| ||||||||||| Sbjct 148 GATGATGAATTTGAGAAACAGATGAGGCTT-GAAGTGTTCACGGAAAATTTGAAGTTCAT 206 Query 301 TGAGAAATTTAATAAGAAAGGGGA-T-AGAACCTACAAGCTTGGTGTCAACGAGTTTGCG 358 |||||| || ||||| | ||||| | | || |||||| |||||||||||| |||| || Sbjct 207 TGAGAACTTCAATAA-TATGGGGAGTCA-AAGCTACAAACTTGGTGTCAACAAGTTCACG 264 Query 359 GATTGGACCAGAGAGGAATTCATTGCCACTCACACCGGCCTCAAG-GGGGTTAACGGGA- 416 |||||||| | |||||| ||| ||||||| |||||||| ||| || || |||| | | Sbjct 265 GATTGGACTAAAGAGGAGTTCCTTGCCACCCACACCGGTCTC-AGTGGCATTAATGTAAC 323 Query 417 TTCCATCCTCT-GAATTTGTCGATGAAATGATACCTTCTTGGAATTGGAATGTCAGTGAT 475 || || ||| | ||| | || |||||| || || |||||||||||| ||||||||| Sbjct 324 TT-CA-CCTTTCGAAGTGGTTAATGAAACGACGCCAGCTTGGAATTGGACCGTCAGTGAT 381 Query 476 GTCGC-TGGCCGTGA-GACCAAAGATTGGAGATACGAAGGAGCTGTAACACCTGTTAAAT 533 ||| | ||| | | |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 382 GTC-CTTGG-C---ACGACCAAAGATTGGAGAAACGAAGGAGCTGTAACACCTGTTAAAT 436 Query 534 ACCAAGGCCAATGTGGATGTTGTTGGGCATTCTCAAGCG-TCGCAGCGGTGGAAGGTTTG 592 ||||||| |||||||| |||||||||| |||||| ||| | |||||| ||||||||||| Sbjct 437 ACCAAGGAGAATGTGGAGGTTGTTGGGCGTTCTCA-GCGATAGCAGCGATGGAAGGTTTG 495 Query 593 ACAAAGATTGT---TGGAAACAACCTAGTATCATTGTCTGAACAACAACTTCTAGATTGC 649 |||||||||| ||||||| | | ||||| | |||||||||||||||||||||||| Sbjct 496 ACAAAGATTGCCCGTGGAAACCTC--A-TATCACTATCTGAACAACAACTTCTAGATTGC 552 Query 650 GACAGAGAGCGTGA-CAACGGTTGCAACGGTGGAATAATG-TCAGACGCTTTCAGCTATA 707 | |||||||| || ||| |||||||| || |||| |||| | ||| ||||||| ||||| Sbjct 553 GCCAGAGAGCA-GAACAATGGTTGCAAGGGAGGAACAATGAT-AGAAGCTTTCAACTATA 610 Query 708 TAATCAAAAACCGAGGCATTGCCTCAGAGG-CATCATACCCTTACCAAGCGGCAGAGGGG 766 || | |||||| ||||| || | ||||| | ||||||||||||||| | |||||| Sbjct 611 TAGTAAAAAACGGAGGCGTTTCTTCAGAAAACG-CATACCCTTACCAAGTGAAAGAGGGC 669 Query 767 ACATGCCGGTACAATGGGAAACCCTCCGCATGG-A-TCAGAGGGTTCCAGACCGTTCCAA 824 ||||||||| ||| | | |||| || || | | ||||||||||| | | |||||||| Sbjct 670 CCATGCCGGTCCAACGATATACCCGCC--ATAGTAATCAGAGGGTTCGAAAACGTTCCAA 727 Query 825 GCAACAACGAGCGTGCATTGCTCGAGGCTGTATCCAAG-CAGCCTGTCTCAGTGTCCATT 883 |||||||||| ||||| || ||||| || ||||| ||| || |||||| ||||| |||| Sbjct 728 GCAACAACGAACGTGCGTTACTCGAAGCCGTATC-AAGACAACCTGTCGCAGTGGACATT 786 Query 884 GACGCG-GATGGGCCCGGTTTCATGCATTACTCAGGGGGAGTGTACGATGAGCCGTACTG 942 |||||| | || | | ||||| || ||||||||||||||||||||| ||| || | |||| Sbjct 787 GACGCGAG-TGAGACTGGTTTTATTCATTACTCAGGGGGAGTGTACAATGCGCGGGACTG 845 Query 943 TGGGACCAACGTGAACCATGCAGTGACGTTCGTTGGATACGGAACGAGCCCAG-AGGGGA 1001 |||||| | |||||| ||||||||||| |||||||| ||||| ||||||| || | || | Sbjct 846 TGGGACTAGCGTGAATCATGCAGTGACATTCGTTGGGTACGGTACGAGCC-AGGAAGGTA 904 Query 1002 TCAAGTACTGGCTGGCTAAGAACTCGTGGGGTGAGACTTGGGGAGAGAATGGTTACATTA 1061 ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 905 TCAAGTACTGGTTGGCTAAGAACTCTTGGGGTAAGACTTGGGGAGAGAATGGTTACATTA 964 Query 1062 GGATCCGTAGAGATGTGGCA-TGGCCTCAAGGCATGTGTGGTGTGGCTCAGTATGCTTTT 1120 |||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||| | Sbjct 965 GGATTCGTAGAGATGTGG-AGTGGCCTCAAGGCATGTGTGGTGTAGCTCAGTATGCTTCT 1023 Query 1121 TATCCGGTTGCCTAA 1135 ||||||||||| ||| Sbjct 1024 TATCCGGTTGCGTAA 1038 > Ahg937726 jgi|Araly1|937726|scaffold_501917.1 Length=955 Score = 82.4 bits (44), Expect = 7e-15 Identities = 95/119 (80%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 486 GTGAGACCAAAGATTGGAGA-TACGAAGGAGCTGTAACACCTGTTAAATACCAAGGCCAA 544 |||||| || ||||||||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 337 GTGAGAGCATGGATTGGAGACT-GGAAGGGGCCGTTACACCCGTTAAGGACCAAGGCCAA 395 Query 545 TGTGGATGTTGTTGGGCATTCT-CAAGCG-TCGCAGCGGTGGAAGGTTTGACAAAGATT 601 ||||||||||||||||| || | | ||| | || || |||||||| | ||||||||| Sbjct 396 TGTGGATGTTGTTGGGCTTT-TGCG-GCGGTGGCGGCTGTGGAAGGCGTAACAAAGATT 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46891187910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5