BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29100.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value Ahg912713 jgi|Araly1|912713|Al_scaffold_0001_2967 682 0.0 > Ahg912713 jgi|Araly1|912713|Al_scaffold_0001_2967 Length=426 Score = 682 bits (369), Expect = 0.0 Identities = 408/427 (96%), Gaps = 2/427 (0%) Strand=Plus/Plus Query 1 ATGGAAGTGCCAATGGACTGTCCCGGTTGCGAGAACAAAGTTAGGAAAGCTCTTGAAAAG 60 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 1 ATGGAAGTGCCAATGGACTGTCCCGGGTGCGAGAACAAAGTTAAGAAAGCTCTTGAAAAG 60 Query 61 ATGAACGGAGTCCACGATGTTCAGATAGACAT-AAAACAGCAGAGAGTAACGGTGACTGG 119 || || |||||||||||||||||||||||| | ||| ||||||| ||||||||||||||| Sbjct 61 ATTAAGGGAGTCCACGATGTTCAGATAGAC-TCAAAGCAGCAGAAAGTAACGGTGACTGG 119 Query 120 TTCGGCCGAGCAGAAGAAAGTTCTGAAAGTTGCAAGGAATGTTACAAAGAGAGATATATG 179 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 TTCGGCCGAGCAGAAGAAAGTTCTGAAAGTTGCTAGGAATGTTACAAAGAGAGATATATG 179 Query 180 CTTATGGTCGTACCCTTACCACCCTGAATCTAATGGATATAACGACAGGTACTTCAAGAA 239 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 180 CTTATGGTCGTACCCTTACAACCCCGAATCTAATGGATATAACGACAGGTACTTCAAGAA 239 Query 240 GAAGTTTCGCAAAAGAATCAACATGTCGGTGAACGGTGAGAAAGTGAGTTCCTATAACTA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 GAAGTTTCGCAAAAGAATCAACATGTCGGTGAACGGTGAGAAAGTGAGTTCCTACAACTA 299 Query 300 CCACAAGCATGGCTACCACGGACACGAGCATGGATACTATCAAGAACGGCCTTATTCAGG 359 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CCACAAGCATGGCTACCACGGACACGAGCATGGATACTACCAAGAACGGCCTTATTCAGG 359 Query 360 TCTTATCAATCCGAGCGCTAGCTCCATGTTCAGTGAAGAAAACCCTCATTTCTGCAGCAT 419 ||||||| ||| ||||||||| || || |||||||| ||||||||||||||||||||||| Sbjct 360 TCTTATCGATCAGAGCGCTAGTTCTATATTCAGTGAGGAAAACCCTCATTTCTGCAGCAT 419 Query 420 CATGTGA 426 ||||||| Sbjct 420 CATGTGA 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15338546778 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5