BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29110.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1 1288 0.0
Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1 353 1e-96
Ahg921942 jgi|Araly1|921942|scaffold_103223.1 230 2e-59
> Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1
Length=969
Score = 1288 bits (697), Expect = 0.0
Identities = 814/870 (94%), Gaps = 10/870 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTCTGTACGATCTGTGTTCGTGGCTCTAACCATTCTTTCCATGGATCTAAGGATC 60
|||||||| ||| | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTGTCGGTATGGTCTGTGTTGGTGGCTCTAACCATTCTTTCCATGGATCTTAGGATC 60
Query 61 TCTCAAGCCAGACCTCATGTCACTTTGAACGAGCAATCAATTGTTGATTACCACCAACAA 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 TCTCAAGCCAGACCTCATGTCACTTTGAACGAGCAATCCATTGTTGATTACCACCAGCAA 120
Query 121 TGGATGACTCAATTCTCTCGAGTTTACAAGGATGAATCCGAGAAAGAAATGAGGCTTAAA 180
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct 121 TGGATGACTCAGTTCTCTCGAGTTTACCAGGATGAATCCGAGAAAGAAATGAGACTTCAA 180
Query 181 GTGTTCAAGAAAAACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTTCAAGAAAAACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTAC 240
Query 241 ACACTTGGTGTCAACGAGTTCACGGATTGGAAAACAGAAGAGTTCCTTGCGACCCACACC 300
||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 241 ACAGTTGGTGTCAACGAGTTCACGGATTGGACAATAGAAGAGTTCCTTGCCACCCACACC 300
Query 301 GGCCTCCGCGTTAACGTAACTTCACTATCCGAACTATTTAATAAAACGAAGCCATCAAGG 360
||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||
Sbjct 301 GGCCTCCGCGTTAACGTAACTACACTATCCGAACTATTTAATGAAACTATGCCATCAAGG 360
Query 361 AATTGGAACATGAGTGATATCGACATGGAAGACGAAAGCAAAGACTGGAGAGACGAAGGA 420
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 AATTGGAACATTAGTGATATCGACATCGACGACGAAAGCAAAGACTGGAGAGACGAAGGA 420
Query 421 GCTGTAACACCTGTTAAA-TATCAAGGAGCATGTCGTTTGACAAAGATATCTGGCAAAAA 479
||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GCTGTAATACCTGTTAAAGT-TCAAGGAGCATGTGGTTTGACAAAGATATCTGGCAAAAA 479
Query 480 TCTATTAACACTGTCCGAACAACAGCTAATAGATTGCGACATAGAGAAAAACGGTGGTTG 539
||||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||
Sbjct 480 TCTATTAACACTGTCCGAACAGCAGCTTATAGATTGCGACACAGAGAAAAACACTGGTTG 539
Query 540 CAATGGCGGAG-AATTTGAAGAAGCTTTCAAGTACATAATAAAAAACGGAGGCGTTTCTT 598
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 TGATGGCGGAGGAATA-GAAGAAGCTTTCAAGTACATAATAAAAAACGGAGGGGTTTCTT 598
Query 599 TAGAAACGGAATACCCTTACCAAGTGAAAAAGGAGAGTTGTCGTGCCAACGCCAGA-CGC 657
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
Sbjct 599 TAGAAACGGAATACCCTTACCAAGTGAAAAAGGGGAGCTGTCGTGCCAACGCCAGATC-C 657
Query 658 GCCCCACATACACAGATTAGAGGGTTTC-AAATGGTTCCAAGCCACAACGAGCGTGCGTT 716
||| | || ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 658 GCCACTCAGACACAGATTAGAGGGTT-CGAAATGGTTCCAAGCCACAACGAGCGTGCGTT 716
Query 717 GCTCGAGGCCGTAAGAAGACAGCCCGTCTCGGTGTTGATTGACGCAAGAGCGGACAGTTT 776
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 717 GCTCGAGGCCGTAAGAAGACAGCCAGTCTCGGTGTTGATTGATGCAAGAGCGGACAGTTT 776
Query 777 CGGT-CATTACAAAGGGGGAGTGTACGCTGGGCTGGACTGTGGGACAGACGTGAATCATG 835
| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 CAAAAC-TTACAAAGGGGGAGTATACGCTGGGCTGGACTGTGGGACAGACGTGAATCATG 835
Query 836 CAGTGACGATCGTTGGGTACGGAACGATGA 865
|||||||| |||||||||||||||||||||
Sbjct 836 CAGTGACGTTCGTTGGGTACGGAACGATGA 865
Score = 171 bits (92), Expect = 1e-41
Identities = 92/92 (100%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 905 AGAGTTGGGGAGAAAATGGTTACATGAGGATCCGTAGAGATGTGGAGTGGCCTCAAGGAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGAGTTGGGGAGAAAATGGTTACATGAGGATCCGTAGAGATGTGGAGTGGCCTCAAGGAA 928
Query 965 TGTGTGGTATAGCTCAGGTTGCTGCTTATCCG 996
||||||||||||||||||||||||||||||||
Sbjct 929 TGTGTGGTATAGCTCAGGTTGCTGCTTATCCG 960
> Ahg473114 jgi|Araly1|473114|fgenesh2_kg.1__3068__AT1G29080.1
Length=1038
Score = 353 bits (191), Expect = 1e-96
Identities = 364/445 (82%), Gaps = 21/445 (5%)
Strand=Plus/Plus
Query 18 TGTGTTCGTGGCTCTAACCATTCTTTCCATGGATCTAAGGATCTCTC-AAGCCAGACCTC 76
|||||| || | | |||||||| ||||||||||||||| |||||| | |||||| | |||
Sbjct 18 TGTGTTAGTTGTTTTAACCATTTTTTCCATGGATCTAAAGATCTC-CGAAGCCACATCTC 76
Query 77 ATGTCACTTTGAACGAG-CAATCAATTGTTGATTACCACCA-ACAATGGATGACTCAA-T 133
|||| ||||| ||||| ||| | ||| || |||||||||| | ||||||||| | || |
Sbjct 77 GTGTCGCTTTGCACGAGCCAA-CCATTTTTTATTACCACCAGA-AATGGATGA-TAAATT 133
Query 134 TCTCTCGAGTTTACAAGGATGAATCCGAGAAAGAAATGAGGCTTAAAGTGTTCAAGAAAA 193
| ||||||||||| | ||||||| |||||| | ||||||||| ||||||||| | |||
Sbjct 134 TTTCTCGAGTTTATGATGATGAATTTGAGAAACAGATGAGGCTTGAAGTGTTCACGGAAA 193
Query 194 ACTTGAAATTCATTGAGAACTTCAATAATATGGGGAACCAAAGCTATACACTTGGTGTCA 253
| ||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 194 ATTTGAAGTTCATTGAGAACTTCAATAATATGGGGAGTCAAAGCTACAAACTTGGTGTCA 253
Query 254 ACGAGTTCACGGATTGGAA-AACAGAAGAGTTCCTTGCGACCCACACCGGCCTCCGCG-- 310
|| ||||||||||||||| || ||| ||||||||||| ||||||||||| ||| | |
Sbjct 254 ACAAGTTCACGGATTGGACTAA-AGAGGAGTTCCTTGCCACCCACACCGGTCTCAGTGGC 312
Query 311 -TTAACGTAACTTCAC-TATCCGAACTATTTAATAAAACGAAGCCATCAAGGAATTGGAA 368
|||| |||||||||| | || ||| | ||||| |||||| |||| | |||||||||
Sbjct 313 ATTAATGTAACTTCACCTTTC-GAAGTGGTTAATGAAACGACGCCAGCTTGGAATTGGAC 371
Query 369 CATGAGTGATATCGACATGGAAGACGAAAGCAAAGACTGGAGAGACGAAGGAGCTGTAAC 428
| | |||||| || | ||| | ||| |||||| |||||| ||||||||||||||||
Sbjct 372 CGTCAGTGATGTC--CTTGGCA--CGAC--CAAAGATTGGAGAAACGAAGGAGCTGTAAC 425
Query 429 ACCTGTTAAATATCAAGGAGCATGT 453
|||||||||||| ||||||| ||||
Sbjct 426 ACCTGTTAAATACCAAGGAGAATGT 450
> Ahg921942 jgi|Araly1|921942|scaffold_103223.1
Length=1086
Score = 230 bits (124), Expect = 2e-59
Identities = 346/447 (77%), Gaps = 40/447 (9%)
Strand=Plus/Plus
Query 20 TGTTCGTG-GCTCTAACCATTCTTTCCATGGA-TCT-AAGGATCTCTCAAGCCAGACCTC 76
|||| ||| | |||||||||||||||||| || ||| || | |||||||||||| | |||
Sbjct 45 TGTTTGTGAG-TCTAACCATTCTTTCCAT-GAGTCTAAAAG-TCTCTCAAGCCACATCTC 101
Query 77 ATGTCACTTTGAACGAG-CAATCAATTGTTGATTACCACCAACAATGGATGACTCAATTC 135
|||||| || ||||| ||||| ||| ||| |||| || ||||||||||||| |||
Sbjct 102 GTGTCACCTTCCACGAGCCAATC-GTTGCTGAACACCATCAGCAATGGATGACTCGGTTC 160
Query 136 TCTCGAGTTTACAAG-GATGAATC-CGAGAAAGAAATGAGGCTTAAAGTGTTCAAGAAAA 193
||||||||||| || |||| | | ||||||| ||||||| || | |||||||||||||
Sbjct 161 TCTCGAGTTTA-TAGCGATG-AGCTCGAGAAACAAATGAGATTTGATGTGTTCAAGAAAA 218
Query 194 ACTTGAAATTCATTGAGAACTTCAATAA-TATGGGGAACCA-AAGCTATAC-A-CTTGGT 249
||||||| ||||||||||| || || || | |||| | | || | |||| | ||||||
Sbjct 219 ACTTGAAGTTCATTGAGAAATTTAACAAGAAAGGGG-A-TAGAA-C-ATACAAGCTTGGT 274
Query 250 GTCAACGAGTTCACGGATTGGA-AAACAGAAGAGTTCCTTGCGACCCACACCGGCCTC-C 307
|||||||| || ||||||||| || ||| |||||| |||| ||||||||||| |||
Sbjct 275 GTCAACGAATTTGCGGATTGGACCAA-AGAGGAGTTCATTGCCACCCACACCGGTCTCAA 333
Query 308 GCG--TTAACGTAACTT-CACT-ATCCGAACTATT-T-AATAAAACGA-AGCCATCAAGG 360
| | |||||| || || || | || ||| | || | || ||| || | || || ||
Sbjct 334 GGGATTTAACGGAA-TTCCA-TCCTCGGAA-T-TTGTCGATGAAATGATA-CCTTCTTGG 388
Query 361 AATTGGAACATGAGTGATATCGACATGGAAGAC-GAAAGCAAAGACTGGAGAGACGAAGG 419
|||||||| | |||||| ||| | || | || | |||||| |||||| |||||||
Sbjct 389 AATTGGAATGTCAGTGATGTCG-C-CGG--CCCTGAGATCAAAGATTGGAGATACGAAGG 444
Query 420 AGCTGTAACACCTGTTAAATATCAAGG 446
||||||||||||||||||||| |||||
Sbjct 445 AGCTGTAACACCTGTTAAATACCAAGG 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5