BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29120.5
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473118 jgi|Araly1|473118|fgenesh2_kg.1__3072__AT1G29120.2 2663 0.0
> Ahg473118 jgi|Araly1|473118|fgenesh2_kg.1__3072__AT1G29120.2
Length=1744
Score = 2663 bits (1442), Expect = 0.0
Identities = 1670/1773 (94%), Gaps = 43/1773 (2%)
Strand=Plus/Plus
Query 86 GAAGATGATGATTGAATG--TT--TATTTGGCAGTGAATGGAAGAGATAGAGAGGAGCAT 141
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 1 GAAGATGATGATTGAATGTTTTACTATTTGGCAGTGAACGGAAGAGATAGAGAAGAGCAT 60
Query 142 GGGTCTCTGTGAAGAAGATAACGTAGAGAGAGTTATTATGTTTGATTCTGAAGCGTGACG 201
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 61 GGGTCTCTGTGAAGAAGATAACGCAGAGAGAG---GCATGTTTGATTCTGAAGCGTGACG 117
Query 202 TCACTCAGAAACCGTGAATCAAGGATCTTTCTTCCACTCCTTTCTCTGATTTTGACTTTC 261
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 118 TCACTCAGAAACCGTGATTCAAGGATCTTTCTTCCACTCCTTTCTCTGATTTTGAC--T- 174
Query 262 TCTCCTCTCTCTATATATAAG--CTCAACATCAATATGTCTACGGCTTCTTCTTGGATTC 319
| | ||||||||||||||||| ||| |||||||||||||||| || ||||||||||||
Sbjct 175 T-T-CTCTCTCTATATATAAGCTCTCCACATCAATATGTCTAC-GC--CTTCTTGGATTC 229
Query 320 AACAACCTCCTTTTAGATACTTACCGGATCGTGGCGGTTTCTCTAAGCCAAGCTCTCGCA 379
|||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 230 AACAACCTCCTTTTAGATACTTTCCGGATCGT---GG------TAAGCCAAGCTCTCGCA 280
Query 380 GCGCGCGGCAGTTTTCCTCCGGCGTTGTTTCAGCTTC--C-GCTTCTTCTCCTTCGCC-T 435
| ||||||||||||| |||||||||||||||||||| | |||||||| ||||||| |
Sbjct 281 GAGCGCGGCAGTTTTTTTCCGGCGTTGTTTCAGCTTCTTCTTCTTCTTCTTCTTCGCCGT 340
Query 436 --TCATCCTCGTGCTCCTGTGGTTATTCGGAGATTTTGAA-TTTCGATTTCGGGTCAAAC 492
|| ||||||||||| ||||||||||| ||||||||||| |||| ||||||| |||| |
Sbjct 341 CGTCTTCCTCGTGCTCTTGTGGTTATTCCGAGATTTTGAATTTTC-ATTTCGGCTCAAGC 399
Query 493 AGAAGCTGGAACCAACAGGGACGCAGGGTTCAGGCAATGAGTTCCACAGCCCAACGGAAA 552
|||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 400 AGAAGCTGGAACCAACAGGGACTCAGGGTTCAAGCAATGAGTTCCACTGCCCAACGGAAT 459
Query 553 TTTTCGCTATCGAAAGGCGACTCCGATGACAAAAATGAACCTGATCATCTTCTTGTTCTT 612
|||||| |||| ||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 460 TTTTCGTTATCCAAAGGCGACACTGATGATAAAAATGAACCTGATCATCTTCTTGTTCTT 519
Query 613 GTACATGGTATTTTGGCCAGTCCCAGCGACTGGCTCTACGTAGAAGCTGAGCTGAAAAGA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GTACATGGTATTTTGGCCAGTCCCAGCGACTGGCTCTACGTAGAAGCTGAGCTGAAAAGA 579
Query 673 CGCCTTGGAAGAAGATTCTTGATTTATGCAAGTTCTTCCAATACCTTCACTAAAACATTT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CGCCTTGGAAGAAGATTCTTGATTTATGCAAGTTCTTCCAATACCTTCACTAAAACATTT 639
Query 733 GGCGGGATCGATGGAGCTGGAAAACGACTAGCAGAAGAGGTTAGACAAGTTGTCCAAAAG 792
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 640 GGCGGGGTCGATGGAGCTGGAAAACGACTAGCTGAAGAGGTTAGACAAGTTGTCCAAAAG 699
Query 793 AGCAAGAGCTTAAAGAAGATTTCGTTTTTAGCCCACTCCCTCGGTGGCTTATTTTCCAGA 852
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 700 AGCAAGAGCTTAAAGAAGATTTCTTTTTTAGCCCACTCCCTCGGTGGCTTATTTTCCAGA 759
Query 853 CATGCTGTTGCTGTTCTTTACTCAGCAGCAATGGCACAAGTAAGTGATGTTGCTGTCTCT 912
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 760 CATGCTGTTGCTGTTCTTTACTCAGCAGCAATGTCACAAGCAAGTGATGTTGCTGTCTCT 819
Query 913 CAATCTGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCTAGAACCGATTAATTTC 972
|||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 820 AAATCTGGCGATTCACATCTTCTGCGAGGTAGGATTGCGGGGCTCGAACCGATTAATTTC 879
Query 973 ATCACTTTGGCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAGCTGCCTTTTCTGTTG 1032
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 880 ATCACTTTGGCAACACCTCATCTTGGAGTGAGAGGCAGAAAGCAGCTGCCTTTTCTGTTG 939
Query 1033 GGAGTTCCTATTCTTGAGAAACTTGCTGCACCAATAGCTCCATTCTTTGTTGGTCGGACT 1092
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 940 GGAGTTCCTATTCTAGAGAAACTTGCTGCACCAATAGCTCCGTTCTTTGTTGGTCGGACT 999
Query 1093 GGTAGTCAGTTGTTCCTCACTGATGGTAAAGCTGATAAACCACCTCTTCTTTTGAGGATG 1152
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GGTAGCCAGTTGTTCCTCACTGATGGTAAAGCTGATAAACCACCTCTTCTTTTGAGGATG 1059
Query 1153 GCATCTGATGGTGAAGATCTGAAATTCTTATCGGCGCTGGGGGCATTTCGAAGTCGCATT 1212
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1060 GCATCTGATGGTGAAGATCTGAAATTCTTATCGGCGCTAGGGGCATTTCGAAGCCGCATT 1119
Query 1213 ATATATGCAAACGTATCTTATGACCTAGACATGGTTGGTTGGCGTACATCTTCCATTAGG 1272
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1120 ATATATGCAAACGTATCTTATGACC-A--CATGGTTGGTTGGCGTACATCTTCCATAAGG 1176
Query 1273 AGAGAAACTGAACTTATCAAGCCTTCACGCCGGTCTCTGGATGGATACAAGCATGTTGTT 1332
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1177 AGAGAAACTGAACTTATCAAGCCTCCACGCCGGTCTCTGGATGGATACAAGCATGTTGTT 1236
Query 1333 GATGTTGAATACTGTCCACCTGTTTCATCAGATGGTGCCCATTTCCCTCCAGAAGCTGCT 1392
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GATGTAGAATACTGTCCACCTGTTTCATCAGATGGTGCCCATTTCCCTCCAGAAGCTGCT 1296
Query 1393 AAAGCCAAGGAGGCCGCACAAAGCTCTCCTAGCCCTCAGAACACACTTGAGTATCATGAA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AAAGCCAAGGAGGCCGCACAAAGCTCTCCTAGCCCTCAGAACACACTTGAGTATCATGAA 1356
Query 1453 ATTGTGGAAGAGGAAATGATCCGCGGTCTGCAGAGGTTGGGGTGGAAGAAAGTTGATGTC 1512
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1357 ATTGTGGAAGAGGAAATGATCCGCGGTCTGCAGAGGTTAGGGTGGAAGAAAGTTGATGTC 1416
Query 1513 AGCTTCCACTCCACCTTCTGGCCTTACTTAGCTCATAACAACATTCACGTGAAAAGTGAA 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 AGCTTCCACTCCACCTTCTGGCCTTACTTAGCTCATAACAACATTCACGTGAAAAGTGAA 1476
Query 1573 AGACTTTACAAAGCAGGAGCTGGAGTTATTGCACACGTTGCAGATAGTATAAAACAGCAA 1632
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1477 AGACTTTACAAAGCAGGAGCTGGAGTTATTGCGCATGTTGCAGATAGTATAAAACAGCAA 1536
Query 1633 GAGTCTTCCACGTTTATTACCGCCAGCTTATAAA-TCTTTGGGAGATCGGTGCAGATCAA 1691
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1537 GAGTCTTCCACGTTTATTACCGCCAGCTTATAAACTGTTTGGGAGATCGGTGCAGATCAA 1596
Query 1692 GAATGTTCGCATCTTTGCTTCTTCTAttttttttCTTGGCGAAATCAGAAGAAGTACAAT 1751
||| |||||||||||||||| |||| ||| || | | ||||||| |||| ||| || | |
Sbjct 1597 GAACGTTCGCATCTTTGCTT-TTCT-TTTGTTGT-T-GGCGAAAACAGAGGAACTATATT 1652
Query 1752 CCAATTCATCTGTACATGATTTTCTTGTATTAGCTTGTTGATGATACAACACTTGAAAGA 1811
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 1653 CCAATTCATCTGTACATGATTTTCTTGTAATAGCTTGCTGATGATACAACACTTGAA-GA 1711
Query 1812 TGTTATTATAGATTAAGGTTTCTTAAAGAGAAA 1844
|||||||||||||| ||||||||||||||||||
Sbjct 1712 TGTTATTATAGATTCAGGTTTCTTAAAGAGAAA 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5