BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29150.1
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336019 jgi|Araly1|336019|fgenesh1_pg.C_scaffold_1002584 2023 0.0
> Ahg336019 jgi|Araly1|336019|fgenesh1_pg.C_scaffold_1002584
Length=1866
Score = 2023 bits (1095), Expect = 0.0
Identities = 1189/1236 (96%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 131 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTACGATACTGTACCAG 190
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 631 GAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTTCGATACTGTACCAG 690
Query 191 GTTTTGGAAGACCCTTCTTCATCTCCTGAGGCTATACGGATCAAGGAGCAAGCGATTACA 250
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 691 GTTTTGGAAGATCCTTCTTCATCTCCAGAGGCTATACGGATCAAGGAGCAAGCGATTACA 750
Query 251 AACCTTTGTGATCGATTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTGACC 310
|| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 751 AATCTCTGTGATCGACTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTAACC 810
Query 311 AAGTTGAGGCCTTTCTTTTCCTTAATCCCCAAGGCGAAAACTGCGAAAATCGTCAGAGGA 370
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 811 AAGTTGAGGCCTTTCTTTTCGTTAATCCCCAAGGCGAAAACTGCAAAAATCGTCAGAGGA 870
Query 371 ATCATTGATGCTGTGGCAAAGATTCCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 430
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 871 ATCATTGATGCTGTGGCAAAGATACCTGGAACAACTGATCTCCAGATCACTCTCTGCAAA 930
Query 431 GAGATGGTCGAATGGACCCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 490
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GAAATGGTGGAATGGACTCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCT 990
Query 491 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCGTTGTTGAGT 550
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 991 AGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCACTGTTGAGT 1050
Query 551 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTCGACATAGACTTG 610
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1051 ACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTTGACATAGACTTG 1110
Query 611 CTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACT 1170
Query 671 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCAGCTCAACAAGGCACGATAGAT 730
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1171 GCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCGGCTCAACAAGGCACCATAGAC 1230
Query 731 CTGCAGAGTGGGATTCTTCATGCTGAAGAGAAAGACTACAAAACCGGATACAGTTACTTC 790
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1231 CTGCAGAGTGGGATTCTTCACGCTGAAGAGAAGGACTACAAAACCGGATACAGTTACTTC 1290
Query 791 TTTGAAGCCTTTGAGTCCTTCAACGCTCTCGGAGATCCGAGAGCGGTTTTCAGTTTGAAG 850
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1291 TTTGAAGCCTTTGAGTCCTTCAATGCTCTCGGAGATCCAAGAGCGGTTTTCAGTTTGAAA 1350
Query 851 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCC 1410
Query 911 TCAAAGGCTGGACTACAGTACGTTGGCCCTGACCTGGATGCCATGAAAGCAGTCGCTGAT 970
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 1411 TCAAAGGCTGGACTACAATATGTTGGCCCTGACTTGGATGCCATGAAAGCAGTCGCTGAT 1470
Query 971 GCTCACTCGAAGAGGTCCTTGAAGTTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1030
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1471 GCTCACTCAAAGAGATCCTTGAAACTGTTTGAGAACGCACTCCGTGACTACAAAGCACAG 1530
Query 1031 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCTTCTCTCTATGACACGCTTCTGGAG 1090
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1531 CTTGAAGATGACCCAATTGTCCACAGGCATCTCTCGTCTCTCTATGACACGCTTTTGGAG 1590
Query 1091 CAAAATCTGTGTCGTTTGATCGAGCCCTTCTCAAGAGTTGAGATAGCTCACATTGCTGAG 1150
||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1591 CAAAACCTGTGTCGTTTGATCGAGCCCTTTTCAAGGGTTGAGATAGCGCACATTGCTGAG 1650
Query 1151 CTCATTGGATTGCCGCTCGACCATGTGGAAAAGAAGCTATCTCAGATGATACTCGACAAG 1210
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1651 CTGATTGGATTACCGCTCGACCATGTGGAGAAGAAGCTATCTCAGATGATACTGGACAAG 1710
Query 1211 AAATTTGCAGGTACCTTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1270
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 AAATTTGCAGGGACATTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAG 1770
Query 1271 GCAGATGCTATCTACTCGGCTACCCTCGAAACCATTGCAAACATGGGGAAGGTCGTCGAC 1330
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1771 GCAGATGCTATCTACTCAGCTACTCTCGACACCATTGCAAACATGGGGAAGGTCGTCGAC 1830
Query 1331 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1366
||||||||||||||||||||||||||||||||||||
Sbjct 1831 AGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA 1866
Score = 100 bits (54), Expect = 3e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 13 TCTTCTTATTTCTTCTATACCGTCGTCGAAAAGCTTTACCAAAATCTCACGCCCCCGACG 72
||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 557 TCTTC-TATTTCTTCTCTACCGTCGTCG-AAAGCTTTACCAAAATCTCACGCCCCCGACG 614
Query 73 ATTC 76
||||
Sbjct 615 ATTC 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58811338280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5