BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29160.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921948 jgi|Araly1|921948|scaffold_103229.1 760 0.0
Ahg934010 jgi|Araly1|934010|scaffold_401998.1 405 2e-112
> Ahg921948 jgi|Araly1|921948|scaffold_103229.1
Length=573
Score = 760 bits (411), Expect = 0.0
Identities = 491/529 (93%), Gaps = 8/529 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 87
Query 61 AACATCACACAGAC-GATaaaaaaaGAAGagcagcaacaacaacaacagccagagctaca 119
|||| ||||||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 88 AACACCACACAGACAGTTAAAAAA-GAAGAGCAGCAACAACAACA---GCCAGAGCTACA 143
Query 120 agcaacaacagcCGTTAGATCACCCTCATCGGATCTGACGGCTGAGAAGCGTCCAGACAA 179
|||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 144 AGCAACAACACCCGTTAGATCATCATCGTCGGATCTGACGGCTGAGAAGCGTCCAGACAA 203
Query 180 GATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAACTA 239
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 204 GATCATCCCATGTCCGAGATGCAAGTCCATGGAGACTAAGTTCTGTTACTTCAATAACTA 263
Query 240 CAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGGTGG 299
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 264 CAACGTTAATCAACCACGACACTTCTGCAAAGGTTGTCAGCGTTACTGGACCGCCGGTGG 323
Query 300 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACGTGT 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 324 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGAAAGTCCAAACCTCCGGGACGTGT 383
Query 360 CGGTGGGTTCGCTGAGTTGCTTGGAGCTGCGACTGGAGCTGTTGATCAGGTCGAGCTAGA 419
||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 384 CGGTGGGTTTGCCGAGTTGCTTGGAGCTGCGACTGGAGCCGTTGATCAAGTGGAGCTGGA 443
Query 420 TGCTTTGCTAGTGGAAGAGTGGAGAGCTGCTACGGCGTCTCACGGTGGTTTCCGGCATGA 479
||||||||||||||||||||| |||| || ||| || ||||||||||| ||||||||
Sbjct 444 CGCTTTGCTAGTGGAAGAGTGGCGAGCCGCCACG---TCACACGGTGGTTTTCGGCATGA 500
Query 480 TTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTGTTAA 528
||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 501 TTTTCCGGTGAAGAGACTTCGTTGTTACACCGATGGTCAATCTTGTTAA 549
> Ahg934010 jgi|Araly1|934010|scaffold_401998.1
Length=556
Score = 405 bits (219), Expect = 2e-112
Identities = 439/538 (82%), Gaps = 43/538 (8%)
Strand=Plus/Plus
Query 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60
|||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 24 ATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATTGCATTTAA---C 80
Query 61 AACATCACACAGACGATaaaaaaaGAAG-agcagcaacaacaacaacagccagagctaca 119
| |||||| | |||||| | |||| || || | |||||| || || |||| | |
Sbjct 81 -TC-TCACAC--A--ATAAAATATGAAGAAG-AG--A-AACAAC--CA-CCGGAGCAAGA 127
Query 120 agcaacaacagcCGTTAGATCA-C--CCTCATCGGATCTGACGGCTGAGAAGCGTCCAGA 176
|| |||||| ||||||||||| | | ||||||||||||||||| ||||||||||||||
Sbjct 128 GGCTACAACAACCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCAGA 187
Query 177 CAAGATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAA 236
|||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 188 CAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAATAA 247
Query 237 CTACAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGG 296
||| ||||||||||| || ||||||| || |||| || || |||||||||||||||||
Sbjct 248 CTATAACGTTAATCAGCCTCGACACTTTTGTAAAGACTGCCACCGTTACTGGACCGCCGG 307
Query 297 TGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACG 356
||| || || ||||| ||||||||||| ||||||||||||||||| ||||| || || ||
Sbjct 308 TGGTGCACTTCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCAGGCCG 367
Query 357 TGTCGGTGGGTTCGCTGAGTTGCTTGGAGCTGCG-ACTGGAGCTGTTGATCAGGTCGAGC 415
|||| || |||| | | | ||||||||| || | | ||| | ||| |||| |||||||
Sbjct 368 TGTC-GT-GGTT-GGT-A--TGCTTGGAGATG-GAAATGG-G--GTTCATCAAGTCGAGC 417
Query 416 ---TAGAT-GCTTTGCTAGTGGAAGAGTGG-AG-A-GCTGCTA-CGGC-GTCTCACGGTG 466
|| || || ||||| || || |||||| || | || || | | || | |||||||||
Sbjct 418 TTATAAATGGC-TTGCTCGTTGAGGAGTGGCAGCATGCCGC-AGCCGCAG-CTCACGGTG 474
Query 467 GTTTCCGGCATGATTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTG 524
||||||||||||||||||| ||||| ||||||| |||||| |||| |||||||||||
Sbjct 475 GTTTCCGGCATGATTTTCCTATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATCTTG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5