BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29160.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg921948 jgi|Araly1|921948|scaffold_103229.1 760 0.0 Ahg934010 jgi|Araly1|934010|scaffold_401998.1 405 2e-112 > Ahg921948 jgi|Araly1|921948|scaffold_103229.1 Length=573 Score = 760 bits (411), Expect = 0.0 Identities = 491/529 (93%), Gaps = 8/529 (2%) Strand=Plus/Plus Query 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 87 Query 61 AACATCACACAGAC-GATaaaaaaaGAAGagcagcaacaacaacaacagccagagctaca 119 |||| ||||||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 88 AACACCACACAGACAGTTAAAAAA-GAAGAGCAGCAACAACAACA---GCCAGAGCTACA 143 Query 120 agcaacaacagcCGTTAGATCACCCTCATCGGATCTGACGGCTGAGAAGCGTCCAGACAA 179 |||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 144 AGCAACAACACCCGTTAGATCATCATCGTCGGATCTGACGGCTGAGAAGCGTCCAGACAA 203 Query 180 GATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAACTA 239 |||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||| Sbjct 204 GATCATCCCATGTCCGAGATGCAAGTCCATGGAGACTAAGTTCTGTTACTTCAATAACTA 263 Query 240 CAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGGTGG 299 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 264 CAACGTTAATCAACCACGACACTTCTGCAAAGGTTGTCAGCGTTACTGGACCGCCGGTGG 323 Query 300 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACGTGT 359 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 324 AGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGAAAGTCCAAACCTCCGGGACGTGT 383 Query 360 CGGTGGGTTCGCTGAGTTGCTTGGAGCTGCGACTGGAGCTGTTGATCAGGTCGAGCTAGA 419 ||||||||| || |||||||||||||||||||||||||| |||||||| || ||||| || Sbjct 384 CGGTGGGTTTGCCGAGTTGCTTGGAGCTGCGACTGGAGCCGTTGATCAAGTGGAGCTGGA 443 Query 420 TGCTTTGCTAGTGGAAGAGTGGAGAGCTGCTACGGCGTCTCACGGTGGTTTCCGGCATGA 479 ||||||||||||||||||||| |||| || ||| || ||||||||||| |||||||| Sbjct 444 CGCTTTGCTAGTGGAAGAGTGGCGAGCCGCCACG---TCACACGGTGGTTTTCGGCATGA 500 Query 480 TTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTGTTAA 528 ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 501 TTTTCCGGTGAAGAGACTTCGTTGTTACACCGATGGTCAATCTTGTTAA 549 > Ahg934010 jgi|Araly1|934010|scaffold_401998.1 Length=556 Score = 405 bits (219), Expect = 2e-112 Identities = 439/538 (82%), Gaps = 43/538 (8%) Strand=Plus/Plus Query 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60 |||||||| |||||||||||||||||||||||||||||||||||||| |||| || | Sbjct 24 ATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATTGCATTTAA---C 80 Query 61 AACATCACACAGACGATaaaaaaaGAAG-agcagcaacaacaacaacagccagagctaca 119 | |||||| | |||||| | |||| || || | |||||| || || |||| | | Sbjct 81 -TC-TCACAC--A--ATAAAATATGAAGAAG-AG--A-AACAAC--CA-CCGGAGCAAGA 127 Query 120 agcaacaacagcCGTTAGATCA-C--CCTCATCGGATCTGACGGCTGAGAAGCGTCCAGA 176 || |||||| ||||||||||| | | ||||||||||||||||| |||||||||||||| Sbjct 128 GGCTACAACAACCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCAGA 187 Query 177 CAAGATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAA 236 |||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| || Sbjct 188 CAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAATAA 247 Query 237 CTACAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGG 296 ||| ||||||||||| || ||||||| || |||| || || ||||||||||||||||| Sbjct 248 CTATAACGTTAATCAGCCTCGACACTTTTGTAAAGACTGCCACCGTTACTGGACCGCCGG 307 Query 297 TGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACG 356 ||| || || ||||| ||||||||||| ||||||||||||||||| ||||| || || || Sbjct 308 TGGTGCACTTCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCAGGCCG 367 Query 357 TGTCGGTGGGTTCGCTGAGTTGCTTGGAGCTGCG-ACTGGAGCTGTTGATCAGGTCGAGC 415 |||| || |||| | | | ||||||||| || | | ||| | ||| |||| ||||||| Sbjct 368 TGTC-GT-GGTT-GGT-A--TGCTTGGAGATG-GAAATGG-G--GTTCATCAAGTCGAGC 417 Query 416 ---TAGAT-GCTTTGCTAGTGGAAGAGTGG-AG-A-GCTGCTA-CGGC-GTCTCACGGTG 466 || || || ||||| || || |||||| || | || || | | || | ||||||||| Sbjct 418 TTATAAATGGC-TTGCTCGTTGAGGAGTGGCAGCATGCCGC-AGCCGCAG-CTCACGGTG 474 Query 467 GTTTCCGGCATGATTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTG 524 ||||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||||| Sbjct 475 GTTTCCGGCATGATTTTCCTATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATCTTG 532 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5