BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29170.1
Length=3063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921949 jgi|Araly1|921949|scaffold_103230.1 4748 0.0
> Ahg921949 jgi|Araly1|921949|scaffold_103230.1
Length=3104
Score = 4748 bits (2571), Expect = 0.0
Identities = 2908/3072 (95%), Gaps = 18/3072 (1%)
Strand=Plus/Plus
Query 1 ATGCCACGGAATGTATACGGTATGAACCAAAGC-GAGGTGTATAGAAATGTCGATCGTGA 59
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 21 ATGCCACGGAATGTATACGGTATGAACCAAA-CGGAGGTTTATAGAAATGTCGATCGTGA 79
Query 60 AGACCCTAAAGCAATTCTCAATGGTGTTGCAGTTACTGGACTTGTTGGGGTCTTGCGTCA 119
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 80 AGACCCCAAAGCAATTCTCAATGGTGTTGCAGTTACTGGACTTGTTGGGATCTTGCGTCA 139
Query 120 GCTTGGTGATCTCGCTGAGTTTGCAGCAGAGATATTTCATGGGATACAGGAGGAAGTTAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCTTGGTGATCTCGCTGAGTTTGCAGCAGAGATATTTCATGGGATACAGGAGGAAGTTAT 199
Query 180 GGCTACAGCTTCAAGAAGCAATCAGTTAAAGATTAGATTGCAGCATATAGAAGCTACAGT 239
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 200 GGCTACAGCTTCAAGAAGCAATCAATTGAAGATTAGATTGCAGCATATAGAAGCTACAGT 259
Query 240 GCCTCCACTAGAAAAGGCGATGCTTGCACAAACAACTCATATACATTTTGCATACACAGG 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 260 GCCTCCACTAGAAAAGGCGATGCTTGCACAGACAACTCATATACATTTTGCATACACAGG 319
Query 300 AGGTCTGGAGTGGCATCCTCGTATCCCAATTACGCAAAATCACTTAATTTATGACGACTT 359
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 320 AGGTCTGGAGTGGCATCCTCGTATCCCAATTATGCAAAATCACTTAATTTACGACGACTT 379
Query 360 GCCTCACATTATTATGGATCCCTATGAAGAATGCAGGGGTCCTCCACGGTTACACTTGCT 419
|||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 380 GCCTCACATTATCATGGATCCCTATGAAGAGTGCAGGGATCCTCCACGGTTGCACTTGCT 439
Query 420 TGATAAATTTGATATAAATGGTCCTGGATCTTGCTTGAAGCGATACTCAGATCCTACTTA 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 440 TGATAAATTTGATATAAATGGTCCTGGATCTTGCTTGAAGCGATACTCCGATCCTACTTA 499
Query 480 TTTCAGAAGAGCATCAAGCAACCTGAGTCAAGgaaacaagaagttccaaaaagataaaaa 539
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 500 TTTCAGAAGAGCATCAAGCAACCTGATTCAAGGAAACACGAAGATCCAAAAAGATAAAAA 559
Query 540 gcattgtaaaatgaagaagaaaaaaaCTTCGTCAAGGAGTCGAGATATGTCACGTTTGGC 599
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 560 CCTTTGTAAAATGAAGAAGAAAAAAACTTCGTCAAGGAGTCGAGAGATGTCACGTTTGGC 619
Query 600 CTCCTTGGCTAACCAGAATGCCAGGAAGACATTTGCTTCATTTAGCTTCAGTGGACAAAC 659
|||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 620 CTCCATGGCTAACCAAAATGCCAGGAAGACATTTACTTCATTTAGCTTCAGTGGACGAAC 679
Query 660 CTCTTCTACCAAAACCACCTCAACCAGTGACATGGAAAAAAGATATGATTTTCAAGATCA 719
| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 680 CACTTCTACCAAAACCACCTCAACTAGTGACATGGAAAAAAGATTTGATTTTCAAGATCT 739
Query 720 TCATTCTCGCTCTTTTGAGTCCAGAAGTGGTTCAGGCTACAATGAATGCCTTTCAACTGC 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 740 TCATTCTCGCTCTTTTGAGTCCAGAAGTGGTTCAGGCTACAACGAATGCCTTTCAACCGC 799
Query 780 AACTTCTTCACTGAAGACTGGAGAAAGACCGAAAGGGGTGTTCGTTTCATCCAGCTTGAC 839
||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 800 AACCTCTTCATTGAAGACTGGAGAAAGACCAAAAGGAGTGTTCGTTTCATCCAGCTTGAC 859
Query 840 ACCAGGCTCTTGCACTATTGCTTCAGTCCTTTCTGAATGTGAAACCGAAGATGCTCATGA 899
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACCGGGCTCTTGCACTATCGCTTCAGTCCTTTCTGAATGTGAAACCGAAGATGCTCATGA 919
Query 900 TAATTTCCAGTTTAGTCCTTCTCAAGGGCAAGCTGCTCGTGGCTCTTCTTGCGTTAGTTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TAATTTCCAGTTTAGTCCTTCTCAAGGGCAAGCTGCTCGTGGCTCTTCTTGCGTTAGTTG 979
Query 960 GGATGAGAAAGCAGAGATAGTGGAATCTCTTGGTCTGCAGACAGATGAAGCTTCTGAAAT 1019
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 980 GGATGAGAAAGTAGAGATAGTGGAATCTCTTGGTCTGCAGACAGAGGAAGCTTCTGAAAT 1039
Query 1020 GGTGGAGGCGAACTCTGTTGTAGATACTCTAGATGAGAAACCAAGCTATGGGGAAGGGA- 1078
| ||||| ||||| |||||||||||| | ||||||||||||||||||||| | ||||
Sbjct 1040 GATGGAGACGAACCCTGTTGTAGATAAACCAGATGAGAAACCAAGCTATGG--A-GGGAC 1096
Query 1079 TAGGTGGAGTTGATTTCCATTCTAAGGACAATGAAAATGATAAATCAGAATCAGGACTAC 1138
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1097 T-GGTGGAGTTGATTTCCATTCTAAGGACATTGAAAATGATAAATCAGAATCAGGACTAC 1155
Query 1139 GAAAACGTGCTGGGATTGATGAGGTAAGAGAGA-TAAAAAATGGTC-GGGAGATTGTGGG 1196
||||||| ||||||||||||||||||||| || |||||| || || |||||||||||||
Sbjct 1156 AAAAACGTACTGGGATTGATGAGGTAAGAG-GAATAAAAACTG-TCCGGGAGATTGTGGG 1213
Query 1197 AGAACCGAGGGATAGTGAACAAGAGACTGAAAGCGAAGGGGAGTGTTTTGTTGATGCGCT 1256
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 1214 AGAACCAAGGGATAGTGAACATGAGACTGAAAGCGAAGGGGACTGCTTTGTTGATGCGCT 1273
Query 1257 TAATACTATCGAATCAGAATCTGAAAACAATCAAGGGCTTCAAACTAGTCAAGTGAGCAG 1316
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1274 TAATACTATCGAATCAGAATCTGAAAACAAGCAGGGGCATCAAACTAGTCAAGTGAGCAG 1333
Query 1317 TTCCTGTGGTGTTGCAGATGAGAGGTTGGAAAAGTCAGTGTGTGAGCAAGAAACAGAGCA 1376
||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||
Sbjct 1334 TTCCTGTGGTGTTGCAGATGAGATGTTGGAAAAGTCGGTGTGTGAACAAAAAACAGAGCA 1393
Query 1377 GAATTCCTACAGTGTCGAAGATTCTTGCAGATCAATGGATGGGCTTATGGCCAACAGTTT 1436
||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1394 GAATTGCTACAGTGTCGAAGATTCTTGCAGATCAATGGATGGGCTTATAGCCAACGGTTT 1453
Query 1437 TAAAAATGAAGAGAATGCATCGTCAGAAAATGTATCTGTTGAAATGCATCAACAAAATCT 1496
|||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 1454 TAAAAATGAAGAGAATGCATCGTCAGCAAATGTAGCTGATGAAATGCATCAACAAAATCC 1513
Query 1497 ACAGGCGGGTTCAGATATCAACCGCTTACaaaaaaaTGATCTTTGTGCAAACAAGGATAT 1556
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 ACAGGTGGGTTCAGATATCTACCGCTTACAAAAAAATGATCTTTGTGCAAACAAGGATAT 1573
Query 1557 GCGTAATGATTCTGGTGGAAAAGATACCATCACATTTACATTTGTGCCAGGTCTCGAGAA 1616
|||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1574 GCGTAACGATTCTGGTGGAAAAGATATCATCACATTTACATATGTGCCAGGTCTCGAGAA 1633
Query 1617 CAGCTTAGTTGATTCATCAAACCCCTTGATTCATCATGGCCTACAGGAAAATCAAGAAAC 1676
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1634 CAGCTTAGCTGATTCATCAAACCCCTTGATTCATCATGGCCTACAGGAAAATCAAGAACC 1693
Query 1677 AGAAGCTGAATCTTCTGGGGATCTCGAAGCCTTTAAAATATGGACTAATGGTGGTCTATT 1736
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1694 AGAAGCTGAATCTTCTGGTGATCTCGAAGCCATTAAAATATGGACTAATGGGGGTCTATT 1753
Query 1737 GGGACTGAAACCATCGAAACCTCCAGTCTTGGCAATGCCAAGTTCTTTAAGTCCAGATTG 1796
|||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1754 GGGACTTAAACCATCGAAACCTCCAGTCTTGGCAGTGCAAAGTTCCTTAAGTCCAGATTG 1813
Query 1797 CAAGACCGAGGAAAGGACAGTTGGTTTTGCAGAAGCTGAAAAAGATAAAGCAGATGATCT 1856
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1814 CAAGACCGGGGAAAGGACAGTTGGTTTTGCAGAAGCTGAAAAAGATAAATCAGATGATCT 1873
Query 1857 AGTTGAAAATGCTTCACATAGACATGTTCTGAATAATTCAAGCTTAGCAACGCCAGGAAC 1916
| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 1874 AATTGAAAATGCTTCACATAGACGTGTTCTGAATAATGCAAGCTTAGCAACACCAGGAAC 1933
Query 1917 CCAAAATCCAGGTAGTTCAAATGGCATAGTCATGGGTATTGTAGACCAAAGAGAGTCCCA 1976
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1934 CCAAAATCCAATTAGTTCAAGTGGCATAGCCATGGGTATTGTAGACCAAAGAGAGTCCCA 1993
Query 1977 TGAGACTTCTT-CTGGAGTTTTTGGACTCAGCCACAAGTTTCTTACTAGTGGTTTCCGCA 2035
||||||||||| | |||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 1994 TGAGACTTCTTTC-GGAGTTTTTGGACTCAGCCACAAGTTACTCACTAATGGTTTCCGCA 2052
Query 2036 GAAAGGATTCATTTGCACATGATAGAAAGACTGTACCAGCAACGATTCCAGAGAACGATG 2095
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2053 GAAAGGATTCATTTGCCCATGATAGAAAGACTGTACCAGCAACCATTCTAGAGAACGATG 2112
Query 2096 AAGTGACTACAGAGAGGAGGAGGTTTTGTGACCAAGATATTAATGAGAAAACCTTTATGG 2155
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 2113 AAGTGACTACAGAGAGGAGGAGGTTTTGTGACCAAGATATTGATGACAAAACCTTTGTGG 2172
Query 2156 ACCCCTTCAGAGACGAAGCTCCTATTGATTGGATCACTTCGTCTCCGCCTCTTCAACACA 2215
| |||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2173 ATCCCTTCAGGGATGAAGCTCCCATTGATTGGATTACTTCGTCTCCGCCTCTTCAACACA 2232
Query 2216 TGAAAATATCTCTCAATCCCGCTGACACTCTTCAGGCTTCGAGACTGAAGCTTAAATTTT 2275
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 2233 TGAAAATATCTCTCAGTCCCGCTGACACTCTTCAGGCTTCCAGACTGAAGCTTACATTTG 2292
Query 2276 CAGATGGAGACAACACTTACAATACCTTTTCCTCCTTCCAGTTGCTTCCAGAGACTGGAA 2335
||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| ||| ||
Sbjct 2293 CAGATGGGGACAACAGTTACAATACATTTTCTTCCTTCCAGTTGCTTCCAGAGGCTGCAA 2352
Query 2336 CTTCCCTTCCTGATTCTTATTCTGACGACGAC-AC--TTTTTGTAGATCATCTCCTTACA 2392
|||||||||| ||||| ||||| ||||||||| || |||||||||||| ||||||||||
Sbjct 2353 CTTCCCTTCCAGATTCGTATTCCGACGACGACGACACTTTTTGTAGATCCTCTCCTTACA 2412
Query 2393 TGTCAGATACCGATTATCTTAGCGATAATCACTCCTTGTCAAATTCTGAGCCGTGGGAAG 2452
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2413 TGTCAGATACTGATTATCTTAGCGATAATCACTCCTTGTCATATTCTGAGCAGTGGGAAG 2472
Query 2453 AATCCAGTGACAGCCATGGAAGAAAAGAGCAAGAACTATATGATTCTTTCCACGAAAGTA 2512
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2473 AATTCAGTGACAGCCATGGAAGAAAAGAGCAAGAACTATATGATTCATTCCACGAAAGTA 2532
Query 2513 GGCATGTTGATAACAATGCTGAAGCTTCCCCTCTAGGGATCAAATCAGAAAGTTCTTGCG 2572
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 2533 GGCATGTTGATAACAATGCTGAAGCTTCTCCTCTAGGGATCAAATCAGAAAGTGATTGTG 2592
Query 2573 TCGCCGTAAACCTCTCATATCTCCAAAATCCTGCTGAGCCCTTACCACCGCCATTTCCAC 2632
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2593 TCGCAGTAAACCTCTCATACCTCCAAAATCCTGCTGAGCCCTTACCACCGCCATTTCCGC 2652
Query 2633 CCATGCAATGGATGGTTTCAAAGACACCTTCAGAGAAAATGGAAGACAAAACACAGTCCC 2692
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2653 CCGTGCAATGGATGGTTTCAAAGACACCTTCAGAGAAAATTGAAGACAAAACACAGTCCC 2712
Query 2693 TACAACTACAAGAAGCTCTCAGGTTTGCGTTTGAGAAGCATATTTCATTGCCTACAGCT- 2751
||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||| |
Sbjct 2713 TACAACTACAAGACGCTATCAGGTTCGCATTTGAGAAGCATATTTCATTGCCTACAA-TG 2771
Query 2752 AAGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGGCCCATCTG 2811
||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2772 AAGAAAGAACTGCCTAGCATGGTGACTCCTGCTCCTAAACCAGAAATTAAGGTCCATCTG 2831
Query 2812 AAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAGGAGACTGAAACTGGAGAC 2871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2832 AAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAGGAGACTGAAACTGGAGAC 2891
Query 2872 TTCTTGCAACAAATCCGAACACAACAATTCAACCTTAGGCCTGTGGTCATGACAACGACA 2931
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2892 TTCTTGCAACAAATCCGAACACAACAATTCAACCTGAGACCTGTGGTCATGACAACGACA 2951
Query 2932 TCATCGGCTACTGCAACAACTGACCCTATCATAAACACTAAGATCAGCGCGATTTTGGAG 2991
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2952 TCATCGGCTGCTGCAACAACTGACCCTATCATAAACACTAAGATCAGCGCCATTTTGGAG 3011
Query 2992 AAAGCAAACTCAATACGCCAGGCTGTAGCTAGCAAAGATGGAGATGAAAGCGATACATGG 3051
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3012 AAAGCAAACTCAATACGCCAGGCTGTAGCTAGCAAAGATGGAGATGAAAGTGATACATGG 3071
Query 3052 AGTGATACGTAA 3063
|| ||||| |||
Sbjct 3072 AGCGATACTTAA 3083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115680074065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5