BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29179.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1 1099 0.0
> Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1
Length=1699
Score = 1099 bits (595), Expect = 0.0
Identities = 668/704 (95%), Gaps = 2/704 (0%)
Strand=Plus/Plus
Query 787 ATTCAAACCAGAAAGTGTTTCTGTTGTGAGGAGGATCTCGAAAAGATATTCTACTATTGC 846
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 997 ATTCAAACTAGAAAATGTTTTTGTTGTGATGAGGATCTCGAAAAGATATTCTACTATTGC 1056
Query 847 TCGGATTGTGATTATGCTATGAATATAGTTTGTGCGGAAAAACCACCAGTCTTGTATATA 906
|||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1057 TCGGATTGTGATTATGCTATGAATATAGCTTGTGCGGAGAAACCACCAGTCTTATATATA 1116
Query 907 GACCATCCGAATTGGCATCAGCATACACTTGCTCTCTTTCCTAGACAAGCTTTCTTAACT 966
|||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 1117 GACCATCCGAATTGGCATAATCATACACTTGCTCTGTTTCCTAGACAAGCTTTCTTAACT 1176
Query 967 TGCAATGTGTGCGCCTTGGCCGATGCAAGCTCTCCTATCTATATGTGTCCCCCTTGTGAT 1026
|||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1177 TGCAATGTCTGCGCCCTGGCCGATTCAAGCTCTCCTATCTATATGTGTCCCCCTTGTGAT 1236
Query 1027 TTTGTGGTCCATCTAAGATGTATCAACTTACCACGTGTCATAAGGATATCTCGCCACCCC 1086
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1237 TTTGTGGTCCATCAAAGCTGTATCAACTTACCACGTGTCATAAGGATATCTCGCCATCCC 1296
Query 1087 CATCGCATCTCTTTTACCCCTTTGTTCGACCAACGA-GATAGATCTTGTGGTGTTTGTCG 1145
||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1297 CATCGTATCTCTTTTACCCCTTTGTTCGACCAAC-ATGATAGATCTTGTGGTGTTTGTCG 1355
Query 1146 CGAAACTATCGACAACGATTTTGGGGGTTATTCTTGCATCAAGGATGATTGTTCGTACGG 1205
||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||| ||
Sbjct 1356 CGAAAAGATCGACAACGATTATGGGGGTTATTCTTGCATCAACGACGATTGTTCGTATGG 1415
Query 1206 AGCACATTCAAGATGTGCCACACAAAGAAATGTGTGGGATGGCATAGAGCTTGAAGGGGT 1265
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1416 AGCACATTCGAGATGTGCCACACAGAGAAATGTGTGGGATGGCATAGAGCTTGAAGGAGT 1475
Query 1266 GTTAGAAGAGATTGAAGAAGAAGTTGAGCCGTTTGTGACGATAAGTGATGGAATCATACA 1325
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GTTAGAAGACATTGAAGAAGAAGTTGAGCCGTTTGTGACGATAAGTGATGGAATCATACA 1535
Query 1326 ACATTTTAGTCATCAACAACATCATTTGAGACTTGATGAGAACAAAGACAGAGATTACGA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 ACATTTTAGTCATCAACAACATCATTTGAGACTTGATGAGAACAAAGACAGAGATTACGA 1595
Query 1386 TGACAGTAAGCAGTGTGATGCATGCATCACACCAATCTATTTTGGTAACCTCTACTCTTG 1445
||||| || ||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1596 TGACAATATGCAGTGTGATGCATGCATCACGCCCATCTATTTCGGTAACCTCTACTCTTG 1655
Query 1446 TATACAATGCAGCTTCATTCTTCACGAAGAATGTGCGAATTTAT 1489
||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1656 TATGCAATGTAGCTTCATTCTTCACGAAGAATGTGCGAATTTAT 1699
Score = 887 bits (480), Expect = 0.0
Identities = 699/798 (88%), Gaps = 42/798 (5%)
Strand=Plus/Plus
Query 1 GTGTTTTTATTACAATTAGAAATTCAGAAACACTAAG-T--TAATCACA-TTCAAACTCA 56
||||||||||||||||||| |||| ||||||||||| | |||||||| ||||||||||
Sbjct 1 GTGTTTTTATTACAATTAG-CATTCGGAAACACTAAGTTAATAATCACATTTCAAACTCA 59
Query 57 AAATCTCTCGTTACTCAAGTAATCGTTCTCTCTCTGC-ACTCTATGGATTCTCCCGAGTC 115
|||||||||| ||||||| ||||||||||||||| || |||||||||||||||| ||||
Sbjct 60 AAATCTCTCGCTACTCAAATAATCGTTCTCTCTCGGCAACTCTATGGATTCTCCGGAGTT 119
Query 116 GAAGCTCATATCACTTGCTACTCAGCTCATCTCTCTAGACAACTCTTCGGATTTGGAGCT 175
||||||| ||||||||||||||||| | ||||||||| |||||||| | |||||||||||
Sbjct 120 GAAGCTCGTATCACTTGCTACTCAGTTGATCTCTCTAAACAACTCTACAGATTTGGAGCT 179
Query 176 CGTATCATGTACTATTATTCAAATAATATCTCTCGTTAGCTCAATGGATTTGGATTCGCA 235
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGTATCATGTACTATTATTCAAATAATCTCTCTCGTTAGCTCAATGGATTTGGATTCGCA 239
Query 236 GCCGAAGCCCGAGACGAAGCTCATGTCACTCATAGCTCAAACAATCTCTCTTTTCAACTC 295
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 240 GCCGAAGCCCGAGACAAAGCTCATGTCACTCATAGCTCAAACAATTTCTCTCTTCAACTC 299
Query 296 CATGGATTTGGATTCCCAGCCGGAGCCGTTAAGGAATCTCATATCACTCATTACTCAAGA 355
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CATGGATTTGGATTCCCAGCCGGAGCCGTTAAGGAAGCTCATATCACTCATTACTCAAGA 359
Query 356 ATTATCTCTCCAAAACTCTATAGATTCTGATTCTGAGCCAAAGCCTAATTCACAGGTTAT 415
| ||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||
Sbjct 360 AGTATCTCTCCAAAACTCTGTAGATTCGGATTCTGAGCCAAAGCCTAATTCAGAGTTTAT 419
Query 416 GTCACTCTACTCTGAAACATTCAAACTCAAGCCGAGACCGGAGCTCATATCGATCATCGT 475
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 420 GTCATTCTACTCTGAAACATTCAAACTCGAGCCGAGACCGGAGCTCATATCAATCATCAC 479
Query 476 TCAAATATACAGTCTTTTCATGTCGCCGGAGCCGGATTTCACAGATTCAGATTCGGGTTC 535
|||||||| ||| ||||| || | || | | ||||||| |||
Sbjct 480 TCAAATATT---TCTCTTCAT--CG----A------TT-C---G-----GATTCGGATTC 515
Query 536 GAGTTCAGATTCGGAGATGGAGTCAAAGCTCATATCAGTCATTTCTCAAATACTCACAGT 595
| | | ||||||||||||||| ||||||||||||||||||||||||||| || || |
Sbjct 516 G-G---A--TTCGGAGATGGAGTCGAAGCTCATATCAGTCATTTCTCAAATAATCTCAAT 569
Query 596 CGACACGGTTGTGGT-A-ACGGGTGAGGAGTTGGATGAGTCGCAAAAGATGTCAAAAACG 653
|| | || |||| | |||| || ||||||||||||||||||||||||||| |||||
Sbjct 570 CGTTTCC-TT-TGGTGAGACGGATGGGGAGTTGGATGAGTCGCAAAAGATGTCCAAAACA 627
Query 654 AAATCACTTATTTTACGTT-TTAGTCAACTAATCTCTCTTGTCAGCTCTATGGACTTGGA 712
|||||| |||| |||| || ||||||||||||||||||| ||||||||| |||| |||||
Sbjct 628 AAATCAGTTATATTAC-TTATTAGTCAACTAATCTCTCTCGTCAGCTCTCTGGATTTGGA 686
Query 713 TTCGGAGCCGGAGCCAGAGTCGGAGCTCATATCACTCATTAAGCAAATAATATCTTTCAG 772
|||| |||||||||| ||||| |||||||||||||||||||||||| |||| ||| || |
Sbjct 687 TTCGCAGCCGGAGCCGGAGTCAGAGCTCATATCACTCATTAAGCAAGTAATCTCTGTCGG 746
Query 773 CAACTCAATATCGGATTC 790
|||||| |||||||||||
Sbjct 747 CAACTCTATATCGGATTC 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5