BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29195.1 Length=861 Score E Sequences producing significant alignments: (Bits) Value Ahg921952 jgi|Araly1|921952|scaffold_103233.1 953 0.0 > Ahg921952 jgi|Araly1|921952|scaffold_103233.1 Length=624 Score = 953 bits (516), Expect = 0.0 Identities = 582/613 (95%), Gaps = 7/613 (1%) Strand=Plus/Plus Query 136 AAAAAGAATGAAGGAGACAATCAGGTGTTGCATCGCTTGCATTCTACCGTGTGGAGCGCT 195 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 16 AAAGAGAATGAAGGAGACAATCAGGTGTTGCATAGCTTGCATTCTACCGTGTGGAGCTCT 75 Query 196 TGACGTGATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 255 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 TGACGTAATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 135 Query 256 GGCCAGCGAAATCATGAAGGCTCACCCGAAGCACGTACTCAAGAAACCATCTTCTCCAAC 315 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 136 CGCCAGAGAAATCATGAAGGCTCACCCAAAGCACGTACTCAAGAAACCATCTTCTCCACC 195 Query 316 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 255 Query 376 AGCTGAGCTCCAACGTGGTAAGATTTATTTCCTCATGCCTGCTACTAAATCTGATAAATG 435 |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 256 AGCTGAGCTCCAACGTGGCAAGATTTATTTCCTCATGCCTGCAAATAAATCTGATAAATG 315 Query 436 CGCCGGAGGAGGAAAGATCCGCCGGGAAAAAAGTAACGC---AAACGCCGTCGTCAAGAA 492 |||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||| Sbjct 316 CGCCGGCGGAGGAAAGATCCGCCGGGAAAAAGGTAACGCAATAAACGCCGCCGTCAAGAA 375 Query 493 ACGGTCACAGTATCGCCGGCAGCATCGTGACGGTGATGAGAAATGTAACGGCGGCGAAAG 552 |||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 376 ACGGTCACAGAATCGCCGGCAAAATCGTGACGGTGATGAGAAATGTAA---CGGCGAAAA 432 Query 553 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCGTCTGATCGATACTT 612 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 433 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCATCTGATAGATACTT 492 Query 613 GACGGAGATATTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 672 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 GACGGAGATACTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 552 Query 673 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAACTGAAGACTGAGAAAACGG 732 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| Sbjct 553 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAAGTGAAGATTGAGAAA-CGG 611 Query 733 CATCGTTTTAGTG 745 ||||||||| ||| Sbjct 612 CATCGTTTTTGTG 624 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31870758612 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5