BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29195.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921952 jgi|Araly1|921952|scaffold_103233.1 953 0.0
> Ahg921952 jgi|Araly1|921952|scaffold_103233.1
Length=624
Score = 953 bits (516), Expect = 0.0
Identities = 582/613 (95%), Gaps = 7/613 (1%)
Strand=Plus/Plus
Query 136 AAAAAGAATGAAGGAGACAATCAGGTGTTGCATCGCTTGCATTCTACCGTGTGGAGCGCT 195
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 16 AAAGAGAATGAAGGAGACAATCAGGTGTTGCATAGCTTGCATTCTACCGTGTGGAGCTCT 75
Query 196 TGACGTGATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TGACGTAATCAGAATCGTTCACTCAAACGGACACGTGGAGGAGATCAGTGGCACGATCAC 135
Query 256 GGCCAGCGAAATCATGAAGGCTCACCCGAAGCACGTACTCAAGAAACCATCTTCTCCAAC 315
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 136 CGCCAGAGAAATCATGAAGGCTCACCCAAAGCACGTACTCAAGAAACCATCTTCTCCACC 195
Query 316 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GTCAGATCACGACGAGCGTGACGTCATCTCAGCCACAAAGATCGTCATCGTCCCTCCCGA 255
Query 376 AGCTGAGCTCCAACGTGGTAAGATTTATTTCCTCATGCCTGCTACTAAATCTGATAAATG 435
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 256 AGCTGAGCTCCAACGTGGCAAGATTTATTTCCTCATGCCTGCAAATAAATCTGATAAATG 315
Query 436 CGCCGGAGGAGGAAAGATCCGCCGGGAAAAAAGTAACGC---AAACGCCGTCGTCAAGAA 492
|||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 316 CGCCGGCGGAGGAAAGATCCGCCGGGAAAAAGGTAACGCAATAAACGCCGCCGTCAAGAA 375
Query 493 ACGGTCACAGTATCGCCGGCAGCATCGTGACGGTGATGAGAAATGTAACGGCGGCGAAAG 552
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 376 ACGGTCACAGAATCGCCGGCAAAATCGTGACGGTGATGAGAAATGTAA---CGGCGAAAA 432
Query 553 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCGTCTGATCGATACTT 612
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 433 TAATGACGTTAAAGATAAAAACTACGAGAAGGATTTATTGATCTCATCTGATAGATACTT 492
Query 613 GACGGAGATATTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 672
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GACGGAGATACTATCGGAGAAAGTGGCGACGCAAAAAGATCGGAGGAAAGGACGCGTCGG 552
Query 673 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAACTGAAGACTGAGAAAACGG 732
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 553 CGTTTGGAGGCCGCACTTAGAAAGCATATCGGAGATCATAAGTGAAGATTGAGAAA-CGG 611
Query 733 CATCGTTTTAGTG 745
||||||||| |||
Sbjct 612 CATCGTTTTTGTG 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5