BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29200.2 Length=2150 Score E Sequences producing significant alignments: (Bits) Value Ahg473137 jgi|Araly1|473137|fgenesh2_kg.1__3091__AT1G29200.2 3314 0.0 Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1 121 3e-26 > Ahg473137 jgi|Araly1|473137|fgenesh2_kg.1__3091__AT1G29200.2 Length=2118 Score = 3314 bits (1794), Expect = 0.0 Identities = 2039/2152 (95%), Gaps = 37/2152 (2%) Strand=Plus/Plus Query 1 ACTTAGAATTAATTTGTTCTGTCGGGATTCCTCCACACTTTTTTCACCAATTGTCATATT 60 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1 ACTTAGAATTAATTTGTTCTGTCTGGATTTCTCCACACTTTTTTCACCAATTGTCATATT 60 Query 61 TTATTGTTGAATATTTTGGTTCCATCAATCTCTTAATTGCTTGCCATACATCGAGAGAG- 119 ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||| Sbjct 61 TTATTGTTGAATATTTTGGTTCCATCAATTTCTTAATTGCTTCCCTTACATCGAGAGAGT 120 Query 120 TTCTTGATTCATTTTGCATTTCCTAAATAGTTTATGAGCTGAGAGAAGAGACAGATCATT 179 ||||||||| |||||||||||| | ||||||||||||||| || ||| Sbjct 121 TTCTTGATTAATTTTGCATTTCGT-AATAGTTTATGAGCT-------------GA--ATT 164 Query 180 AATGGGGAAACAGGGATCACCGAGAAGTCCTCGACCTGAAACCATAGATAAAGAAGAGAA 239 |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 165 AATGGGGAAACAAGGATCACCGAGAAGTCCTCGACCCGAAAATATAGATAAAGAAGAGAA 224 Query 240 ATTTGGGAGGAGAAGTTTGGATTCTTTATCTGGTAATGATCTCTTACTCGGTAGAAGAAT 299 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 225 AGTTGGGAGGAGAAGTTTGGATTCTTTATCTGGAAATGATCTCTTACTCGGTAGAAAAAT 284 Query 300 ATATGCAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCAGTGGTAGTAG 359 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 285 ATATGGAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCTGTGTTAGTAG 344 Query 360 CAACAAATTTTGGAAGAAGCAACATTCATGGCTTCGTAGGAACTTTAAGTCGATAGTTTT 419 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 345 CAACAAGTTTTGGAAGAAGCAACAGTCATGGCTTCGTAGGAACTTCAAGTCGATAGTTTT 404 Query 420 GATGATCTCAGTCACCGGTTTCATTTTCTGTATGGATTCCATTATGGTTTCGATCTTTCA 479 |||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 405 GATGATCTCAGTCACCGGTTTCATTTTCTGCATCGATTCAATCATGGTTTCGATCTTTCA 464 Query 480 TTCCGATAGTAGAGCCGTGGTGCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 539 ||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 465 TTCTGATAGTAGCGCCATGGTTCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 524 Query 540 GAATGGAGCAGTAGATGCTTCACCAGTTCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 599 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 525 GAATGGAGCTCAAGATGCTTCACCAGTGCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 584 Query 600 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATC 659 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 585 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAATTTCCAAGAGGAAAGATC 644 Query 660 TTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 719 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TTCAAAGTCACCGCAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 704 Query 720 GAGGTCTAGAGAATTAAGCAATGGTTACATCATGGTTAGTGCAAATGGAGGCCTTAATCA 779 ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 705 GAGGTATAGAGAATTAAGCAATGGTTACATAATGGTTAGTGCAAATGGTGGCCTTAATCA 764 Query 780 ACAGCGCGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 839 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 ACAGCGTGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 824 Query 840 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 884 Query 900 CCAAGAGGATCATTTTATCGAGTATCTGAAAGATGAGGTGAATATAGTGAAGAATCTTCC 959 ||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||| Sbjct 885 CCAAGAGGATCGTTTTATAGAGTATCTGAAAGATGAGGTGCATATAGTGAAGGATCTTCC 944 Query 960 TCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGGTTACTGATACGGAGCTTGT 1019 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 945 TCAACATCTAAAATCTACTGATAACAAGAATCTTAGCTTGGTTACTGATACAGAGCTTGT 1004 Query 1020 AAAAGAGGCAACA-CCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATG 1078 ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1005 AAAAGAGGCAA-AGCCAGTCGATTACATCGAACGTGTTCTTCCTTTGTTAAAGAAGTATG 1063 Query 1079 GAATGGTTCATCTTTTCGGATACGGGAATCGCCTCGGGTTTGATCCATTGCCTTTTGACG 1138 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 1064 GAATGGTTCATCTTTTTGGATACGGGAATCGCCTCGGATTTGATCCATTGCCTTTTGATG 1123 Query 1139 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGCGCCCAAGATTCAAG 1198 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1124 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGTGCCAAAGATTCAAG 1183 Query 1199 AAGCGGGATCTCTGTTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCAGATTGG 1258 |||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1184 AAGCAGGATCTCTATTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCATATTGG 1243 Query 1259 AAGAAGCATTACTTGGTGAATCCATGGTGAAAAGTACTGTTAAAGGAGAAGAAGAACCGT 1318 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1244 AAGAAGCATTGCTTGGTGAATCCATGGTGAAAAATACTGTTAAAGGAGAAGAAGAACCGT 1303 Query 1319 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCG 1378 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCA 1363 Query 1379 ATTTTGGAGGAGGAGAAGCCGAGCGCAAAGAGCTTCAAGCTTACCGTGAAGATCATTTCC 1438 ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||| Sbjct 1364 ATTTTGGAGGAGGAGAAACTGAGCGTAAAGAGCTTCAAGAGTACCGTGAAGATCATTTCC 1423 Query 1439 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGCCAGTGTCCCCAGAAGAGTTAAGAAAAA 1498 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1424 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGTCAGTGTCCCCAGAAGAGTTAAGAAAAA 1483 Query 1499 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1484 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1543 Query 1559 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1544 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1603 Query 1619 TTCCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1678 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1604 TTTCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1663 Query 1679 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1664 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1723 Query 1739 TAGCATCAGATGTCTTTGCAATGACTGATTCTGGGAGTCAACTATCATCCTTAGTGTCTG 1798 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1724 TAGCATCAGATGTGTTTGCAATGACTGATTCTGGGAGTCAACTATCGTCCTTAGTGTCTG 1783 Query 1799 GATTTAGAAACTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1858 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1784 GATTTAGAACCTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1843 Query 1859 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGTGTGA 1918 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1844 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGCGTGA 1903 Query 1919 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1904 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1963 Query 1979 GACAACCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTAAAACAATAGT 2038 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1964 GACAGCCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTACAACAATAGT 2023 Query 2039 GTCTGGTCTGAAATTTTTGATTACCCGTTAGTACaaaaaaaGAATGAAGGTACTGTATAT 2098 ||||| |||||||||||| | | | | || ||||||| | ||||||||| Sbjct 2024 GTCTGCTCTGAAATTTTT-A--A------A--A-AA-----GAATGAATGCACTGTATAT 2066 Query 2099 CATTGA-TTTTAAGTTTGTACTCGTTATGAAACATTGAACTAGAACCTCTTT 2149 |||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2067 CATTGACTTTTAAGTTTGTACCCGTTATGAAACATTGAACTAGAACCTCTTT 2118 > Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1 Length=1323 Score = 121 bits (65), Expect = 3e-26 Identities = 74/78 (95%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 2074 aaaaaaGAATGAAGGTACTGTATATCATTGA-TTTTAAGTTTGTACTCGTTATGAAACAT 2132 ||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1323 AAAAAAGAATGAATGCACTGTATATCATTGACTTTTAAGTTTGTACCCGTTATGAAACAT 1264 Query 2133 TGAACTAGAACCTCTTTA 2150 |||||||||||||||||| Sbjct 1263 TGAACTAGAACCTCTTTA 1246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80903680380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5