BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29200.2
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473137 jgi|Araly1|473137|fgenesh2_kg.1__3091__AT1G29200.2 3314 0.0
Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1 121 3e-26
> Ahg473137 jgi|Araly1|473137|fgenesh2_kg.1__3091__AT1G29200.2
Length=2118
Score = 3314 bits (1794), Expect = 0.0
Identities = 2039/2152 (95%), Gaps = 37/2152 (2%)
Strand=Plus/Plus
Query 1 ACTTAGAATTAATTTGTTCTGTCGGGATTCCTCCACACTTTTTTCACCAATTGTCATATT 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACTTAGAATTAATTTGTTCTGTCTGGATTTCTCCACACTTTTTTCACCAATTGTCATATT 60
Query 61 TTATTGTTGAATATTTTGGTTCCATCAATCTCTTAATTGCTTGCCATACATCGAGAGAG- 119
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 61 TTATTGTTGAATATTTTGGTTCCATCAATTTCTTAATTGCTTCCCTTACATCGAGAGAGT 120
Query 120 TTCTTGATTCATTTTGCATTTCCTAAATAGTTTATGAGCTGAGAGAAGAGACAGATCATT 179
||||||||| |||||||||||| | ||||||||||||||| || |||
Sbjct 121 TTCTTGATTAATTTTGCATTTCGT-AATAGTTTATGAGCT-------------GA--ATT 164
Query 180 AATGGGGAAACAGGGATCACCGAGAAGTCCTCGACCTGAAACCATAGATAAAGAAGAGAA 239
|||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 165 AATGGGGAAACAAGGATCACCGAGAAGTCCTCGACCCGAAAATATAGATAAAGAAGAGAA 224
Query 240 ATTTGGGAGGAGAAGTTTGGATTCTTTATCTGGTAATGATCTCTTACTCGGTAGAAGAAT 299
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 225 AGTTGGGAGGAGAAGTTTGGATTCTTTATCTGGAAATGATCTCTTACTCGGTAGAAAAAT 284
Query 300 ATATGCAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCAGTGGTAGTAG 359
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 285 ATATGGAAGTGAAGTTTCCAAGGCTCAAGGATCTAAGCATGATCAAAGCTGTGTTAGTAG 344
Query 360 CAACAAATTTTGGAAGAAGCAACATTCATGGCTTCGTAGGAACTTTAAGTCGATAGTTTT 419
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 345 CAACAAGTTTTGGAAGAAGCAACAGTCATGGCTTCGTAGGAACTTCAAGTCGATAGTTTT 404
Query 420 GATGATCTCAGTCACCGGTTTCATTTTCTGTATGGATTCCATTATGGTTTCGATCTTTCA 479
|||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 405 GATGATCTCAGTCACCGGTTTCATTTTCTGCATCGATTCAATCATGGTTTCGATCTTTCA 464
Query 480 TTCCGATAGTAGAGCCGTGGTGCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 539
||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 465 TTCTGATAGTAGCGCCATGGTTCAAGACATTTCAAGGTTGAGCAATATGACTTTGCATAA 524
Query 540 GAATGGAGCAGTAGATGCTTCACCAGTTCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 599
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 525 GAATGGAGCTCAAGATGCTTCACCAGTGCAAATGTATAGCCGTCTTCTAAACTTAGCTTC 584
Query 600 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATC 659
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 585 GGATTCTCTTGCAAAGAATGAATTCAAACCCGATACACCAAATTTCCAAGAGGAAAGATC 644
Query 660 TTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 719
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTCAAAGTCACCGCAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCATTAGA 704
Query 720 GAGGTCTAGAGAATTAAGCAATGGTTACATCATGGTTAGTGCAAATGGAGGCCTTAATCA 779
||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 705 GAGGTATAGAGAATTAAGCAATGGTTACATAATGGTTAGTGCAAATGGTGGCCTTAATCA 764
Query 780 ACAGCGCGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ACAGCGTGTGGCTATCTGTAACGCTGTTGCGGTTGCTGCTCTGCTCAACGCGACTCTAGT 824
Query 840 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TCTTCCTCGGTTTCTTTACAGCAATGTATGGAAAGATCCTAGCCAATTTGGTGATATATA 884
Query 900 CCAAGAGGATCATTTTATCGAGTATCTGAAAGATGAGGTGAATATAGTGAAGAATCTTCC 959
||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 885 CCAAGAGGATCGTTTTATAGAGTATCTGAAAGATGAGGTGCATATAGTGAAGGATCTTCC 944
Query 960 TCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGGTTACTGATACGGAGCTTGT 1019
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 945 TCAACATCTAAAATCTACTGATAACAAGAATCTTAGCTTGGTTACTGATACAGAGCTTGT 1004
Query 1020 AAAAGAGGCAACA-CCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATG 1078
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1005 AAAAGAGGCAA-AGCCAGTCGATTACATCGAACGTGTTCTTCCTTTGTTAAAGAAGTATG 1063
Query 1079 GAATGGTTCATCTTTTCGGATACGGGAATCGCCTCGGGTTTGATCCATTGCCTTTTGACG 1138
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1064 GAATGGTTCATCTTTTTGGATACGGGAATCGCCTCGGATTTGATCCATTGCCTTTTGATG 1123
Query 1139 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGCGCCCAAGATTCAAG 1198
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1124 TTCAGAGATTACGATGTAAATGCAACTTTCACGCGCTGAAATTCGTGCCAAAGATTCAAG 1183
Query 1199 AAGCGGGATCTCTGTTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCAGATTGG 1258
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1184 AAGCAGGATCTCTATTGGTGAAACGGATAAGAAGATTCAAAACATCGCGTAGCATATTGG 1243
Query 1259 AAGAAGCATTACTTGGTGAATCCATGGTGAAAAGTACTGTTAAAGGAGAAGAAGAACCGT 1318
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1244 AAGAAGCATTGCTTGGTGAATCCATGGTGAAAAATACTGTTAAAGGAGAAGAAGAACCGT 1303
Query 1319 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAAGACATGGTTGCTTATTCTCTATGCA 1363
Query 1379 ATTTTGGAGGAGGAGAAGCCGAGCGCAAAGAGCTTCAAGCTTACCGTGAAGATCATTTCC 1438
||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1364 ATTTTGGAGGAGGAGAAACTGAGCGTAAAGAGCTTCAAGAGTACCGTGAAGATCATTTCC 1423
Query 1439 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGCCAGTGTCCCCAGAAGAGTTAAGAAAAA 1498
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1424 CTCTTCTACTCAAACGTTTGAAGAAATCAAAGTCAGTGTCCCCAGAAGAGTTAAGAAAAA 1483
Query 1499 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CGGGCAAGTGTCCACTAACACCAGAGGAAGCAACTCTGGTTCTTGCTGGTCTTGGATTCA 1543
Query 1559 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AGAGAAAAACATATATTTACTTAGCTGGATCTCAAATCTATGGAGGCTCTTCTCGTATGC 1603
Query 1619 TTCCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1678
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TTTCTTTAACAAGACTGTACCCGAATATCGCGACCAAAGAAACTCTCCTTACACCTCAAG 1663
Query 1679 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 AACTTGCGCCATTCAAGAACTTCTCTTCTCAGCTAGCTGCACTAGATTTCATAGCTTGTA 1723
Query 1739 TAGCATCAGATGTCTTTGCAATGACTGATTCTGGGAGTCAACTATCATCCTTAGTGTCTG 1798
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1724 TAGCATCAGATGTGTTTGCAATGACTGATTCTGGGAGTCAACTATCGTCCTTAGTGTCTG 1783
Query 1799 GATTTAGAAACTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1858
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 GATTTAGAACCTACTACGGAAACGGTCAGGCACCAACATTGAGACCTAACAAGAAGAGGC 1843
Query 1859 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGTGTGA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1844 TTGCAGCAATCTTATCAGACAGTGAAACAATAAAGTGGAAGATTTTTGAAGATCGCGTGA 1903
Query 1919 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 GAAAAATGGTAGAGGAAGGCCAAAAGCTTCGTACTAGGCCTTATGGACGCAGCATTTATA 1963
Query 1979 GACAACCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTAAAACAATAGT 2038
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1964 GACAGCCGAGATGTCCTGAGTGTATGTGTAAATTTTGATCCTTGAAAGTACAACAATAGT 2023
Query 2039 GTCTGGTCTGAAATTTTTGATTACCCGTTAGTACaaaaaaaGAATGAAGGTACTGTATAT 2098
||||| |||||||||||| | | | | || ||||||| | |||||||||
Sbjct 2024 GTCTGCTCTGAAATTTTT-A--A------A--A-AA-----GAATGAATGCACTGTATAT 2066
Query 2099 CATTGA-TTTTAAGTTTGTACTCGTTATGAAACATTGAACTAGAACCTCTTT 2149
|||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2067 CATTGACTTTTAAGTTTGTACCCGTTATGAAACATTGAACTAGAACCTCTTT 2118
> Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1
Length=1323
Score = 121 bits (65), Expect = 3e-26
Identities = 74/78 (95%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 2074 aaaaaaGAATGAAGGTACTGTATATCATTGA-TTTTAAGTTTGTACTCGTTATGAAACAT 2132
||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1323 AAAAAAGAATGAATGCACTGTATATCATTGACTTTTAAGTTTGTACCCGTTATGAAACAT 1264
Query 2133 TGAACTAGAACCTCTTTA 2150
||||||||||||||||||
Sbjct 1263 TGAACTAGAACCTCTTTA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5