BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29220.2
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1 1046 0.0
> Ahg473134 jgi|Araly1|473134|fgenesh2_kg.1__3088__AT1G29220.1
Length=1323
Score = 1046 bits (566), Expect = 0.0
Identities = 623/650 (96%), Gaps = 6/650 (1%)
Strand=Plus/Plus
Query 626 AGGAAAATAGATAAGTTTCTGAGCT-TGAAAAAGATGGGGAAGAGTTTCAATTCAGAAGT 684
||||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 575 AGGAAGATAGATAAGTTTCTGAG-TCTGAAAAAGATGGGGAAAAGTTTCAATTCAGAAGT 633
Query 685 GAGGAATAGGAAGGAATACAGGAATCCTGACTTCCTATTGCATGCTGTATCTTACCAAGA 744
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 634 GAGGAATAGGAAGGAATACAGGAATCCTGACTTCCTATTGCATGCGGTGTCTTACCAAGA 693
Query 745 CATTGACCAGATTGGTTCGTGTTTCAGTAAAGATGTATTTGATCCC-AGTGGATATGACC 803
||||||||||||||||||||||||| ||||||||||||| || ||| | |||||||||||
Sbjct 694 CATTGACCAGATTGGTTCGTGTTTCTGTAAAGATGTATTCGACCCCTA-TGGATATGACC 752
Query 804 CAAGTGACTTCTGTGATGCAATAGAAATCGACATGAAGAATGAGAGGGAAAGGAAGGAAC 863
||||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 753 CAAGTGACTTCTGCGATGCAATAGAAGTTGACATGAAGCATGAGAGGGAAAGGAAGGAAC 812
Query 864 AAGAAAGCAAGAAGAACCAGAAGCTTGACTTTGTTTCTGCTGGTACTCAACCTGGGGCGG 923
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AAGAAAGCAAGAAGAATCAAAAGCTTGACTTTGTTTCTGCTGGTACTCAACCTGGGGCGG 872
Query 924 TTTTCGCTGCTCAAAAGCCTAACATCCCCATTCCAGGTATTCCAGCTTTAGCTACTAGTG 983
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 873 TTTTCGCTGCTCAAAAGCCTAACATCCCCATTCCAGGTATTCCAGCTTTAGTTACTAGTG 932
Query 984 GATTGCCTTCCATACCAACCGAAATTGCTGCTCGTGATGGTAGACCGAACAAGAAATCCA 1043
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 933 GATTGCCTTCCATACCAACCGAAATCGCTGCTCGGGATGGTAGACCGAACAAGAAATCCA 992
Query 1044 AATGGGATAAGGTTGATGGGGACGTAAAGAATCCTCCTCTAGCAGCTGGAACTCAGGATT 1103
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 993 AATGGGATAAGGTTGATGGGGACGTAAAGAATCCTCCTCTAGCAGCTGGGACTCAGGATT 1052
Query 1104 CTATATCCTCAATCCGGTCTAATGCAGCTCTTGTATCTGCTACAAGTGCTGGTTCTGGAT 1163
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1053 CCCTATCCTCAATCCGGTCTAATGCAGCTCTTGTATCTGCTGCAAGTGCTGGTTCTGGAT 1112
Query 1164 ACTCAGCTTTTGCGCAACAACggagacgagaggtggaaggaagaagatcttccgagagga 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ACTCAGCTTTTGCGCAACAACGGAGACGAGAGGTGGAAGGAAGAAGATCTTCCGAGAGGA 1172
Query 1224 aattggagagaagaagttgagagaCATAACCAGAACGAAGCTTTTCTATG 1273
|||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1173 AATTGGAGAGAAGAAGTTGAGA--CATAACCAGAACGAAGCTTTTTTATG 1220
Score = 765 bits (414), Expect = 0.0
Identities = 542/600 (90%), Gaps = 24/600 (4%)
Strand=Plus/Plus
Query 1 GGATCCAAGTTCGGGTTGCAATTCGATTCAGAATCAAACCA-TTTTTGAAGAACCCTAAA 59
||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1 GGATCTAAGTTCGGGTTGCAATTCGATTCGGAATCAAA-CATTTTTTGAAGAACCCTAAA 59
Query 60 AGTTCTCTTCTTCCCCCAAATTTGAAT-TTGTTCTTGCAATCGGATTCGAAATCCGAAAG 118
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 60 AGTTCTCTTCTTCCCCCAAATTTGTATCTTGTTCTTGCAATCGGATTCGAATTCCGAAAG 119
Query 119 TCTTAGTCTCGAAT-TTGAGCTCAACAGTTTCTTATGGCTCCGAAGAAGTCTGAAGGAAT 177
|| ||||||||||| || |||||||||| ||||||||||||||||| |||||||||||
Sbjct 120 TCATAGTCTCGAATCTT--CCTCAACAGTTCCTTATGGCTCCGAAGAAATCTGAAGGAAT 177
Query 178 CGCTTTGCTTTCCGTTTACAGtgatgaagatgacgaagagatggaagacgccgaggaaga 237
|||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CGCTTTACTATCGGTTTACAGTGACGAAGATGACGAAGAGATGGAAGACGCCGAGGAAGA 237
Query 238 ggaagaagaggatgagaagcaga-gaaatcaggaagagagtgaaaaaataattgaagaag 296
||||||||| || ||| |||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 238 GGAAGAAGAAGACGAGCAGCAGAAGAA-TCAGGAAGAGAGTGAAAAACGAATTGAAGAAG 296
Query 297 atcaggtagaagaagcgaattatatggatgaagaagagaaaggaagaggaggagaagaTT 356
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 ATCAGGTAGAAGAAACGAATTATATGGATGAAGAAGAGAGAGGAAGAGGAGGAGAAGATT 356
Query 357 CTAGAACGCCGAGGCTATTAGATGGTGTTGGAGCTTCTTCTAGTGCTCATGGGACTCCTC 416
||||||| |||||| ||||||||| || ||||||||||||||||||||| | ||| ||||
Sbjct 357 CTAGAACTCCGAGGTTATTAGATGCTGGTGGAGCTTCTTCTAGTGCTCACGCGACGCCTC 416
Query 417 GTTCACTTGATAACGATGAATCATCGAGACCTGATTGGAGTAATCGAATGATTGGTGAGT 476
||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 417 GTTCAATTGATAACGATGAATCGTCGAG---T------------CGAATGATTGGTGAGT 461
Query 477 CTGGAGTTGCGGATGGTGAGAGAGGTGATGATGCTTCAGGGGAAAGTAGTGATACGTTAT 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 462 CTGGAGTTGCGGATGGTGAGAGAGGTGATGATGCTTCAGGGGAAAGTTGTGATACGTTAT 521
Query 537 TGGATCAGTTTCTTCCGCCAAGACCGAGAGAGAGGTGCTCTGAGGAGCTGCAA-GCAAGA 595
|||||||||||||||||||| |||||||||| | |||||| |||||||||||| | ||||
Sbjct 522 TGGATCAGTTTCTTCCGCCACGACCGAGAGAAAAGTGCTCGGAGGAGCTGCAAAGGAAGA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5