BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29240.1 Length=2294 Score E Sequences producing significant alignments: (Bits) Value Ahg921956 jgi|Araly1|921956|scaffold_103237.1 2455 0.0 > Ahg921956 jgi|Araly1|921956|scaffold_103237.1 Length=1767 Score = 2455 bits (1329), Expect = 0.0 Identities = 1630/1772 (92%), Gaps = 33/1772 (2%) Strand=Plus/Plus Query 309 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAGCGTACCTCTTCTTTCAACAAGACGGA 368 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAACGTACCTCTTCTTTCAACAAGACGGA 73 Query 369 TGCAGAAGACAGCAGGAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTCACTGATTATG 428 ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 74 TGCAGAAGACAGCAGCAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTTATTGATTATG 133 Query 429 ACTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCCATATATGATGGGTTTAG 488 | ||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| Sbjct 134 ATTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCC--AGA-GATGAGTTTAG 190 Query 489 ATGATGAGGTTACTGAACCTGCCTCTGTTCCTTTCACTTGGGAACAAGCTCCTGGAAGAT 548 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| Sbjct 191 ATGATGAGGTTACTGAACCTGTCTCTGTTCCTTTCACTTGGGAGCAAGCTCCTGGGAGAT 250 Query 549 TAAAGGGCAATGATTTCAAACCCCAAGTTTGTGTTTTGATGAAAGAAGAAGAACAAGTTT 608 |||| | ||||| ||||| ||||||||| |||||||||| | ||||| |||||||||| | Sbjct 251 TAAAAGACAATGGTTTCAGACCCCAAGTCTGTGTTTTGACGCAAGAAAAAGAACAAGTCT 310 Query 609 TTACACCATGTCTTCCACCGGGTAAAGCCGTTGATGCAAACATGACAAGATTGCAGAGTT 668 ||| |||||||||||||||||| ||||||||||||| |||| |||||||| ||||||||| Sbjct 311 TTATACCATGTCTTCCACCGGGGAAAGCCGTTGATGGAAACTTGACAAGACTGCAGAGTT 370 Query 669 CAAAGGGTAAACAAGTTGAAGAATCAGATGATGATGAAGATGATGTGTTTTCTGATGCTC 728 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 371 CAAAGGGTAAACAAGTTGAAGAATCAGAGGATGGTGAAGATGATGTGTTTTCTGATGCTC 430 Query 729 TTGACACTCTCTCTCCAAAGGACTCGTTTTCTTTTAACAATAGCATTAGTGGTGTGAGTG 788 |||| || |||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 431 TTGATACACTCTCTCCAAAGGACTCGTTTTCTTTTAACAACAGTATTAGTGGTGTGAGTG 490 Query 789 AATATGGTGGCGTTGAGACCAAGAAACCACTGGATGCTCAATCTCGGGATTTCATGATGA 848 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 491 AATATGGTGGTGTTGAGACCAAGAAACCACTAGATGCTCAATCTCGGGATTTCATGATGA 550 Query 849 GTCGTTTTTTACCAGCTGCCAAAGCTATGACTGTGGAGCAGTCTCATTATGCTTCGAATC 908 ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 551 GTCGTTTTTTACCGGCTGCCAAGGCTATGACTGTGGAGCAACCTCATTATGCTTCGAATC 610 Query 909 GAAAACCATCCACTTTTATGGCTGAACCAACGATACAGATAAGAGAGTTAGTACCGGGGG 968 |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 611 GAAAACCATCCACTTTTATGGCTGAACCAATTATACAGATGAGAGAGTTAGTACCAGGGG 670 Query 969 AGAAGCAGCAAACTCCTAATAGATATGATGTGTCTATAGTCCCATCTTACTATTACCACC 1028 |||||||||||||||||||||| ||||||| |||| || | | || || || | | Sbjct 671 AGAAGCAGCAAACTCCTAATAGGTATGATGAGTCT-TATT---A-CT-ACCAT--C-A-- 719 Query 1029 AAGACATTGATGATGAAGAAAGCAAGGTGGGTGAGGAAGATGATGAAGTTTCTGAGTACG 1088 || ||||||| ||||||||| || || || ||| |||||||||||||||||||||| | Sbjct 720 AA-ACATTGACGATGAAGAAGGCGGGGCGGATGATAAAGATGATGAAGTTTCTGAGTATG 778 Query 1089 CCTATCTTTCAAAGAGAGGTTGTGGAATGTTGCCACAATTGTGCTTTAAAGACTCTCTCG 1148 ||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 779 CCTATCTTTCAAATAAAGGTTGTGGGATGTTGCCACAATTGTGCTTTAAAGACTCTCTTG 838 Query 1149 GCATGCTGAACACAGTGCCTGGTTTTAAAGCTAAACACAACTCTCCAATAACATCACCAA 1208 ||||||| || || ||| ||||||||||||| ||||||||||||||||||||||| |||| Sbjct 839 GCATGCTTAATACTGTGTCTGGTTTTAAAGCCAAACACAACTCTCCAATAACATCCCCAA 898 Query 1209 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTTA 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 899 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTAA 958 Query 1269 AAAAGCTAGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCATTCACCAG 1328 ||||||| |||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 959 AAAAGCTGGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCAATCGCCGG 1018 Query 1329 TTCATCCAAGCAAT-GGGAAGAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCGAAG 1387 ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1019 TTCATCCAAGCT-TCGGGAACAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCAAAG 1077 Query 1388 AGGTCTTCATCTCCTTACAGACACTCTCGCTGTATGTCACCATTTCGCAGTACAGGTAAC 1447 |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||| Sbjct 1078 AGGTCTTCATCTCCTTACAGACACACTCACTGTATGTCACCATTTCGCAATACAGGCAAC 1137 Query 1448 GGTTCTCCTTTACACCATGCGGGTTTCCCTGAGACTCGTAGGGAAACCGAGAACCTGAGA 1507 |||||||||| |||| ||||||||| |||||||||| || |||| |||||||||||||| Sbjct 1138 AGTTCTCCTTTTCACCCTGCGGGTTTTCCTGAGACTCATAAGGAAGCCGAGAACCTGAGA 1197 Query 1508 GCTAACAGGTTGAGCAATCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1567 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GCTAACAGGTTGAGTAAGCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1257 Query 1568 CCAAAAAGCAATGGTTCAA-T--CT-T-G----GAGAAGACAGTTTATGTCGACACCGAG 1618 |||||||||||||||||| | | | | ||||||||||| ||||||||||||||| Sbjct 1258 TCAAAAAGCAATGGTTCAACTAGCGCTCGCTTTGAGAAGACAGTATATGTCGACACCGAG 1317 Query 1619 AATGATCACA-TGACCAATGATCAGCATAACTCAAATC-TCATGATCTTTCCAGAGGAAG 1676 ||| || || ||| ||||||||||||||||||||| | ||||| ||| ||||||||||| Sbjct 1318 AATTTTC-CAATGAGCAATGATCAGCATAACTCAAA-CGTCATGGTCTATCCAGAGGAAG 1375 Query 1677 CAGATATGACAGGAAGGAAACCAGATGCCAATCCTGAACTTGAAGCTTTTGAAAATATAA 1736 |||| ||| || | ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1376 CAGACATGGCA--A-GGAAACCAGATGCAAATCCTGACCTTGAAGCTTTTGAAAATATAA 1432 Query 1737 GTATTAGAAGTAGTGAAATGGTGAAGGGAAATGAGTTAGTAGAGATCAGTAGTGGTTTTG 1796 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 1433 GTATTAGAAGTGGTGAAATGGTGAAGGAAAATGAGTTAGTAGAGATCAGTAGTGATCTTG 1492 Query 1797 ATCGGTCTCCTCTTGCACCACCTTCTCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1856 ||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 1493 ATCGGTCTCTTCTTGCTCCACCGTCGCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1552 Query 1857 ATCTGCCTTCAGTAACTTCTCAGATCACTTCACGTAGATATCATCCATTCAACCCCCAAA 1916 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1553 ATCTGCCTTTAGTAACTTCTCAGATCCCTTCACGTAGATATCATCCATTCAACCCCCAAA 1612 Query 1917 AGCAGGATCTTACAGAAAACTACAGAAATGGTACCAAGTGGGAAACTATTGTTAAGACTT 1976 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1613 AGCAGCATCTTACAGAAAACTACAGAAATGTTACCAAGTGGGAAACTATTGTTAAGACTT 1672 Query 1977 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 2036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 1732 Query 2037 AATCCAAAACTTGAGACCTTGATGCTTCTCGA 2068 |||||||||||||||||||||| ||||||||| Sbjct 1733 AATCCAAAACTTGAGACCTTGAAGCTTCTCGA 1764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86388675660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5