BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29240.1
Length=2294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921956 jgi|Araly1|921956|scaffold_103237.1 2455 0.0
> Ahg921956 jgi|Araly1|921956|scaffold_103237.1
Length=1767
Score = 2455 bits (1329), Expect = 0.0
Identities = 1630/1772 (92%), Gaps = 33/1772 (2%)
Strand=Plus/Plus
Query 309 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAGCGTACCTCTTCTTTCAACAAGACGGA 368
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 14 CTCTTACTATGGAGGAGAGGAAACTGAACTTCAACGTACCTCTTCTTTCAACAAGACGGA 73
Query 369 TGCAGAAGACAGCAGGAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTCACTGATTATG 428
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 74 TGCAGAAGACAGCAGCAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTTATTGATTATG 133
Query 429 ACTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCCATATATGATGGGTTTAG 488
| ||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||
Sbjct 134 ATTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCC--AGA-GATGAGTTTAG 190
Query 489 ATGATGAGGTTACTGAACCTGCCTCTGTTCCTTTCACTTGGGAACAAGCTCCTGGAAGAT 548
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 191 ATGATGAGGTTACTGAACCTGTCTCTGTTCCTTTCACTTGGGAGCAAGCTCCTGGGAGAT 250
Query 549 TAAAGGGCAATGATTTCAAACCCCAAGTTTGTGTTTTGATGAAAGAAGAAGAACAAGTTT 608
|||| | ||||| ||||| ||||||||| |||||||||| | ||||| |||||||||| |
Sbjct 251 TAAAAGACAATGGTTTCAGACCCCAAGTCTGTGTTTTGACGCAAGAAAAAGAACAAGTCT 310
Query 609 TTACACCATGTCTTCCACCGGGTAAAGCCGTTGATGCAAACATGACAAGATTGCAGAGTT 668
||| |||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 311 TTATACCATGTCTTCCACCGGGGAAAGCCGTTGATGGAAACTTGACAAGACTGCAGAGTT 370
Query 669 CAAAGGGTAAACAAGTTGAAGAATCAGATGATGATGAAGATGATGTGTTTTCTGATGCTC 728
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 371 CAAAGGGTAAACAAGTTGAAGAATCAGAGGATGGTGAAGATGATGTGTTTTCTGATGCTC 430
Query 729 TTGACACTCTCTCTCCAAAGGACTCGTTTTCTTTTAACAATAGCATTAGTGGTGTGAGTG 788
|||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 431 TTGATACACTCTCTCCAAAGGACTCGTTTTCTTTTAACAACAGTATTAGTGGTGTGAGTG 490
Query 789 AATATGGTGGCGTTGAGACCAAGAAACCACTGGATGCTCAATCTCGGGATTTCATGATGA 848
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 AATATGGTGGTGTTGAGACCAAGAAACCACTAGATGCTCAATCTCGGGATTTCATGATGA 550
Query 849 GTCGTTTTTTACCAGCTGCCAAAGCTATGACTGTGGAGCAGTCTCATTATGCTTCGAATC 908
||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 551 GTCGTTTTTTACCGGCTGCCAAGGCTATGACTGTGGAGCAACCTCATTATGCTTCGAATC 610
Query 909 GAAAACCATCCACTTTTATGGCTGAACCAACGATACAGATAAGAGAGTTAGTACCGGGGG 968
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 611 GAAAACCATCCACTTTTATGGCTGAACCAATTATACAGATGAGAGAGTTAGTACCAGGGG 670
Query 969 AGAAGCAGCAAACTCCTAATAGATATGATGTGTCTATAGTCCCATCTTACTATTACCACC 1028
|||||||||||||||||||||| ||||||| |||| || | | || || || | |
Sbjct 671 AGAAGCAGCAAACTCCTAATAGGTATGATGAGTCT-TATT---A-CT-ACCAT--C-A-- 719
Query 1029 AAGACATTGATGATGAAGAAAGCAAGGTGGGTGAGGAAGATGATGAAGTTTCTGAGTACG 1088
|| ||||||| ||||||||| || || || ||| |||||||||||||||||||||| |
Sbjct 720 AA-ACATTGACGATGAAGAAGGCGGGGCGGATGATAAAGATGATGAAGTTTCTGAGTATG 778
Query 1089 CCTATCTTTCAAAGAGAGGTTGTGGAATGTTGCCACAATTGTGCTTTAAAGACTCTCTCG 1148
||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 779 CCTATCTTTCAAATAAAGGTTGTGGGATGTTGCCACAATTGTGCTTTAAAGACTCTCTTG 838
Query 1149 GCATGCTGAACACAGTGCCTGGTTTTAAAGCTAAACACAACTCTCCAATAACATCACCAA 1208
||||||| || || ||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 839 GCATGCTTAATACTGTGTCTGGTTTTAAAGCCAAACACAACTCTCCAATAACATCCCCAA 898
Query 1209 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTTA 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 GTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTAA 958
Query 1269 AAAAGCTAGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCATTCACCAG 1328
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 959 AAAAGCTGGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCAATCGCCGG 1018
Query 1329 TTCATCCAAGCAAT-GGGAAGAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCGAAG 1387
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 TTCATCCAAGCT-TCGGGAACAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCAAAG 1077
Query 1388 AGGTCTTCATCTCCTTACAGACACTCTCGCTGTATGTCACCATTTCGCAGTACAGGTAAC 1447
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |||
Sbjct 1078 AGGTCTTCATCTCCTTACAGACACACTCACTGTATGTCACCATTTCGCAATACAGGCAAC 1137
Query 1448 GGTTCTCCTTTACACCATGCGGGTTTCCCTGAGACTCGTAGGGAAACCGAGAACCTGAGA 1507
|||||||||| |||| ||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 1138 AGTTCTCCTTTTCACCCTGCGGGTTTTCCTGAGACTCATAAGGAAGCCGAGAACCTGAGA 1197
Query 1508 GCTAACAGGTTGAGCAATCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1567
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GCTAACAGGTTGAGTAAGCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTAC 1257
Query 1568 CCAAAAAGCAATGGTTCAA-T--CT-T-G----GAGAAGACAGTTTATGTCGACACCGAG 1618
|||||||||||||||||| | | | | ||||||||||| |||||||||||||||
Sbjct 1258 TCAAAAAGCAATGGTTCAACTAGCGCTCGCTTTGAGAAGACAGTATATGTCGACACCGAG 1317
Query 1619 AATGATCACA-TGACCAATGATCAGCATAACTCAAATC-TCATGATCTTTCCAGAGGAAG 1676
||| || || ||| ||||||||||||||||||||| | ||||| ||| |||||||||||
Sbjct 1318 AATTTTC-CAATGAGCAATGATCAGCATAACTCAAA-CGTCATGGTCTATCCAGAGGAAG 1375
Query 1677 CAGATATGACAGGAAGGAAACCAGATGCCAATCCTGAACTTGAAGCTTTTGAAAATATAA 1736
|||| ||| || | ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1376 CAGACATGGCA--A-GGAAACCAGATGCAAATCCTGACCTTGAAGCTTTTGAAAATATAA 1432
Query 1737 GTATTAGAAGTAGTGAAATGGTGAAGGGAAATGAGTTAGTAGAGATCAGTAGTGGTTTTG 1796
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 1433 GTATTAGAAGTGGTGAAATGGTGAAGGAAAATGAGTTAGTAGAGATCAGTAGTGATCTTG 1492
Query 1797 ATCGGTCTCCTCTTGCACCACCTTCTCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1856
||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1493 ATCGGTCTCTTCTTGCTCCACCGTCGCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATA 1552
Query 1857 ATCTGCCTTCAGTAACTTCTCAGATCACTTCACGTAGATATCATCCATTCAACCCCCAAA 1916
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1553 ATCTGCCTTTAGTAACTTCTCAGATCCCTTCACGTAGATATCATCCATTCAACCCCCAAA 1612
Query 1917 AGCAGGATCTTACAGAAAACTACAGAAATGGTACCAAGTGGGAAACTATTGTTAAGACTT 1976
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1613 AGCAGCATCTTACAGAAAACTACAGAAATGTTACCAAGTGGGAAACTATTGTTAAGACTT 1672
Query 1977 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATC 1732
Query 2037 AATCCAAAACTTGAGACCTTGATGCTTCTCGA 2068
|||||||||||||||||||||| |||||||||
Sbjct 1733 AATCCAAAACTTGAGACCTTGAAGCTTCTCGA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86388675660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5