BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29250.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473131 jgi|Araly1|473131|fgenesh2_kg.1__3085__AT1G29250.1 1033 0.0
Ahg482359 jgi|Araly1|482359|fgenesh2_kg.4__1419__AT2G34160.1 484 3e-136
Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1 145 5e-34
> Ahg473131 jgi|Araly1|473131|fgenesh2_kg.1__3085__AT1G29250.1
Length=690
Score = 1033 bits (559), Expect = 0.0
Identities = 639/675 (95%), Gaps = 16/675 (2%)
Strand=Plus/Plus
Query 38 TCTCTCTGTCTCTTCAATTTCATTCGTTTTCTGAGATAAAAG-TGAGAGAGAAATCTAAA 96
||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 22 TCTCTCTTTCTCTTCAATTTCATTCG-TTTCTGAGAT-AAAGTTGAGAGAGAAATCTAAA 79
Query 97 TTCGAGAGGAGAAGTTTTAATTTTTCTGAGTTAGATTCAATGGAAGAGATCACGGAAGGA 156
||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||| ||
Sbjct 80 TTCGAGAAGAGAAGTTTTGAGTTTTC-GAGTTAGATTCAATGGAAGAGATCACGGAAAGA 138
Query 157 GTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAAGAATCGGATTCAAGTTTCCAAC 216
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 139 GTTAACAACATGAACTTGGCCGTCGATACCCAGAAGAAGAATCGGATTCAAGTTTCCAAC 198
Query 217 ACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCAGTACACT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAGAGGTACATGCAGCAGTACACT 258
Query 277 GATGTCGAATTGTCTGCACTAGGAATGGCTATTGCCACTGTTGTTACGGTCGCTGAGATA 336
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 259 GATGTCGAATTGTCTGCACTAGGAATGGCCATTGCTACTGTTGTTACGGTCGCTGAGATA 318
Query 337 TTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATGACATCGACTGTGGATATCAAG 396
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 319 TTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATGACCTCGACTGTGGATATCAAG 378
Query 397 GATGATTCAAGGGGTCGTCCTGTGCAGAAAGCTAAGATTGAGATCACGCTTGCCAAGTCT 456
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 379 GATGATTCAAGGGGTCGTCCTGTGCAGAAAGCCAAGATTGAGATCACGCTTGCCAAGTCT 438
Query 457 GAGAAGTTTGATGAACTAATGGCTGCAGCTAATGAAGAGAAGGAGGCTGCAGAAGCCCAA 516
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 439 GAGAAGTTTGATGAATTAATGGCTGCAGCCAATGAAGAGAAGGAGGCTGCAGAAGCCCAA 498
Query 517 GAGCAAAACTAGATTGTTTCAAGTTTTTTCTGTTCAACGATCTTATTTCTTCGTTCCCTA 576
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 499 GAGCAGAACTAGATTGTTTCAAGTTTTT-CTGTTCAACGATCTTATTTCTTCGTTCCCTA 557
Query 577 TCTCTATCTGCTTAATTTTAAGACACTT---------CTATTTCGTTAATTTTTGGTTCA 627
||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 558 TCTCT--CTGCTTAATTTTAAGACACTTTTATTTGTTCTATTTCCTTAATTTTTGGTTCA 615
Query 628 CTTTTTTATTTCACCTTGGATTGTGTCCTCTGTACCTCTGAGCATTTTTATTTAAAGATC 687
|||||| || ||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 616 CTTTTTGATGTCACCTTGGATTGTGTCCTCTCTACCTCTGAACAATTTTATTTAAAGATC 675
Query 688 GTAGGAAGTATAAAA 702
|||||||||||||||
Sbjct 676 GTAGGAAGTATAAAA 690
> Ahg482359 jgi|Araly1|482359|fgenesh2_kg.4__1419__AT2G34160.1
Length=569
Score = 484 bits (262), Expect = 3e-136
Identities = 348/391 (89%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 136 ATGGAAGAGATCACGGAAGGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAAG 195
|||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 30 ATGGAAGAGATCACCGATGGAGTGAACAACATGAACTTGGCCGTTGATTCCCAGAAGAAA 89
Query 196 AATCGGATTCAAGTTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 255
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 90 AATCGGATTCAGGTTTCAAACACCAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 149
Query 256 AGGTACATGCAGCAGTACACTGATGTCGAATTGTCTGCACTAGGAATGGCTATTGCCACT 315
||||| ||||||||||||| |||||||||| | ||||| || |||||||| ||||| |||
Sbjct 150 AGGTATATGCAGCAGTACAATGATGTCGAACTCTCTGCCCTTGGAATGGCCATTGCAACT 209
Query 316 GTTGTTACGGTCGCTGAGATATTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATG 375
|||||||| || ||||| ||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 210 GTTGTTACTGTTGCTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAAGATTATG 269
Query 376 ACATCGACTGTGGATATCAAGGATGATTCAAGGGGTCGTCCTGTGCAGAAAGCTAAGATT 435
|| || ||||||||||| |||||||| || || || ||||||||||||||||||||||||
Sbjct 270 ACTTCAACTGTGGATATTAAGGATGACTCGAGAGGACGTCCTGTGCAGAAAGCTAAGATT 329
Query 436 GAGATCACGCTTGCCAAGTCTGAGAAGTTTGATGAACTAATGGCTGCAGCTAATGAAGAG 495
|| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 330 GAAATTACGCTTGCAAAGTCAGAGAAGTTTGATGAACTAATGGCTGCAGCCAATGAAGAA 389
Query 496 AAGGAGGCTGCAGAAGCCCAAGAGCAAAACT 526
|| || ||||||||||| || | ||| ||||
Sbjct 390 AAAGAAGCTGCAGAAGCTCAGGTGCAGAACT 420
> Ahg487296 jgi|Araly1|487296|fgenesh2_kg.6__430__AT5G05040.1
Length=603
Score = 145 bits (78), Expect = 5e-34
Identities = 109/123 (89%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 136 ATGGAAGAGATCACGGAA-GGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAA 194
|||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 295 ATGGAAGAGATCAC-CAATGGAGTGAACAACATGAACTTGGCCGTTGATTCCCAGAAGAA 353
Query 195 GAA-TCGGATTCAAG-TTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCC 252
|| ||| |||| || |||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 354 -AAGTCGTATTC-AGATTTCAAACACCAAGAAACGATTGTTCTTCTACGTCAATCTCGCC 411
Query 253 AAG 255
|||
Sbjct 412 AAG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5