BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29260.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473130 jgi|Araly1|473130|fgenesh2_kg.1__3084__AT1G29260.1 1764 0.0
> Ahg473130 jgi|Araly1|473130|fgenesh2_kg.1__3084__AT1G29260.1
Length=1162
Score = 1764 bits (955), Expect = 0.0
Identities = 1079/1137 (95%), Gaps = 16/1137 (1%)
Strand=Plus/Plus
Query 1 TAATTCTGCGATGAGCAAAATCGGCGTTATCCGATCAGATCGTTGAATTGAATCTTCGAG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TAATTCTGCGATGAGCAAAATCGGCGTTATCCGATCAGATCGTCGAATTGAATCTTCGAG 60
Query 61 AAGACTC-----TTCTT---TTGATTCAATCACTCACCGGAGAAGAAGAAGAAGCTATGC 112
||||||| |||| |||||||||||||||||| | | |||||||||||||||||
Sbjct 61 AAGACTCAAAAACTCTTCCATTGATTCAATCACTCACC-G-G-AGAAGAAGAAGCTATGC 117
Query 113 CGGTGTTCAAAGCTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCAC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGGTGTTCAAAGCTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCAC 177
Query 173 GCCTCGCCGTCGCTACAGCTCAGAACTTCGGAATTCTCGGAAACGGCCGAATCCATGTCC 232
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 178 GCCTCGCCGTCGCAACAGCTCAGAACTTCGGAATTCTCGGAAACGGTCGAATCCATGTAC 237
Query 233 TCGAGCTCGCTCCTGGAGCTCCAGGCGTAACTGAATCCGTCTCGTACGATACAGCCGACG 292
|||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct 238 TCGAGCTCGCTCCTGGAGCTCCCGGAGTAACCGAATCCGTCGCGTACGATACAGCCGACG 297
Query 293 CTGTATACGACGTATGTTGGTCAGAATCTCATGACTCTGTGCTCATCGCCGCAATTGGTG 352
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 298 CTGTATACGACGTTTGTTGGTCGGAATCTCATGACTCTGTACTCATCGCCGCAATTGGTG 357
Query 353 ACGGCTCAGTGAAGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCAT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGGCTCAGTGAAGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCAT 417
Query 413 TCCAAGAGCACGCGCGTGAGGTTCAATC-TGTGGATTACAATCCCACGCGGCGCGATTCG 471
|||||||||||||||||||||||||||| | ||||||||||||||||||| || ||||||
Sbjct 418 TCCAAGAGCACGCGCGTGAGGTTCAATCCT-TGGATTACAATCCCACGCGCCGTGATTCG 476
Query 472 TTTCTCACTTCTTCGTGGGATGATACGGTTAAGCTTTGGGCTATGGATCGTCCGGCGAGT 531
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 477 TTTCTCACTTCTTCCTGGGATGATACCGTGAAGCTTTGGGCTATGGATCGTCCGGCGAGT 536
Query 532 GTAAGGACTTTTAAGGAACATGCTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACAT 591
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTAGGACTTTTAAGGAACATGTTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACAT 596
Query 592 GGTGATGTGTTTGCTTCTGCTTCTGGAGATTGTACTTTAAGGATTTGGGATGTTAGAGAA 651
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 597 GGTGATGTGTTTGCTTCTGCTTCCGGAGATTGTACTGTGAGGATTTGGGATGTTAGAGAA 656
Query 652 CCTGGATCAACTATGATCATCCCTGCTCATGATTTTGAGATTTTGTCTTGTGATTGGAAT 711
||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 657 CCTGGATCAACTATGATCATCCCTGGTCATGAATATGAGATTTTGTCTTGTGATTGGAAT 716
Query 712 AAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGATAAGACAGTTAAGGTTTGGGAT 771
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 717 AAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGACAAAACGGTTAAGGTATGGGAT 776
Query 772 GTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCATGGATATGCGGTGAGGAAG 831
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 777 GTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCACGGATATGCGGTGAGAAAG 836
Query 832 GTGAAATTCTCGCCGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGAGTGTT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 837 GTGAAATTCTCGCCGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGACTGTT 896
Query 892 TGTCTTTGGGACTATATGGTGGAAGATGCTTTGGTTGGTAGGTATGATCATCATACAGAG 951
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGTCTTTGGGATTATATGGTGGAAGATGCTTTGGTTGGTAGGTATGATCATCATACAGAG 956
Query 952 TTTGCTGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGTACTGGTTGG 1011
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 TTTGCGGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGCACTGGTTGG 1016
Query 1012 GATGAGCTTGTTTATGTTTGGCAGCAAGGGATGGATCCTAGAGCCAGTTGATTCATAAGT 1071
|||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| |||
Sbjct 1017 GATGAGCTTGTTTACGTTTGGCAGCAAGGGATGGATCCTAGAGCGAGTTAAT-CATTAGT 1075
Query 1072 AAGTTTGTGATTGCAAAACAGTTT-CATCTTTATTTGTTGTGGAATTGGTTTGGTTT 1127
| |||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1076 ATGTTTGTAATTGCAAAACAATTTTC-TCTTTATTTGTTGTGGAATTGGTTTGGTTT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5