BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G29270.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912731 jgi|Araly1|912731|Al_scaffold_0001_2985                    510    4e-144


> Ahg912731 jgi|Araly1|912731|Al_scaffold_0001_2985
Length=372

 Score =  510 bits (276),  Expect = 4e-144
 Identities = 340/372 (91%), Gaps = 0/372 (0%)
 Strand=Plus/Plus

Query  150  ATGGTTATTAGGGAAGCTCTTCTATACATAGCCATGCTCAAACTCGAGATAGAAGCTTTG  209
            ||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGATTAAGGAGGTTCTTCTATACATAGCCATGCTCAAACTCGAGATAGAAGCTTTG  60

Query  210  CAGAGAGAATATGAAGATCTCAAGATTACCAAAAAAGAATCTTTGCACCAATTTCAGGAG  269
            |||||||||||||||||| | || |||| |||||||||| |||| || || |||||||||
Sbjct  61   CAGAGAGAATATGAAGATTTGAAAATTATCAAAAAAGAACCTTTACATCAGTTTCAGGAG  120

Query  270  GTGAAGGTAGAGAAGATTGGGGAAATGTTTCAAGTAAAAATAAAAAGTCCACGGGGAGAA  329
            ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||
Sbjct  121  GTGAAGGTAGAGAAGATTGGGGAAATGTTTCAAGTGAAAATAAAAAGTCCAAAGGGAGAA  180

Query  330  AACAATCTTGTGAATATTCTTGAAGCATTTGAAGAAATGGGGTTGAATGTGGCTCAAGCA  389
            || ||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  181  AATAATATTGTTAACATTCTTGAAGCATTTGAAGAAATGGGGTTGAGTGTGGCTCAAGCA  240

Query  390  AGGGCATCATGCCTAGATTCATTTGCCATGGAAGCCATTGTTGCACCTCAATCCAAAGAC  449
            |||| ||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct  241  AGGGTATCGTGCCTAGATTCATTTGCCATGGAAGCCATTGTTTCACCTCAGTCGAAAGAC  300

Query  450  AAGCTTTGTAGTGTGGATGATTTGACTCAAACTCTTGTCAAAGCTCTTGTCAAGCCAAGT  509
            ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
Sbjct  301  AAGCTGTGTAGTGTGGATGATTTGACTCAAACTCTTCTCAAAGCTGTTGTCAAGTCAATT  360

Query  510  GTCCCACTGTAA  521
            | |||| |||||
Sbjct  361  GCCCCAATGTAA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5