BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29280.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336031 jgi|Araly1|336031|fgenesh1_pg.C_scaffold_1002596 1253 0.0
> Ahg336031 jgi|Araly1|336031|fgenesh1_pg.C_scaffold_1002596
Length=780
Score = 1253 bits (678), Expect = 0.0
Identities = 746/780 (96%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 223 ATGAAGCGAGGTCTAGATATGGCGAGAAGCTACAATGATCATGAAAGTAGTCAAGAAACC 282
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGCGAGGTCTAGAGATGGCGAGAAACTACAATGATCATGAAAGCAGTCAAGAAACC 60
Query 283 GGACCCGAATCACCAAATTCTTCAACCTTTAACGGCATGAAAGCTCTTATCTCTTCTCAT 342
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 61 GGACCCGAATCACCAAATTCTTCAACCTTCAACGACATGAAAGCTCTTATCTCTTCTCAT 120
Query 343 TCGCCTAAAAGAAGCAGGAGATCCGTAGAGAAGAGAGTAGTGAACGTACCGATGAAAGAA 402
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TCACCTAAAAGAAGCAGGAGATCCATAGAGAAGAGAGTAGTGAACGTACCGATGAAAGAA 180
Query 403 ATGGAAGGATCTCGGCACAAAGGGGACACAACTCCGCCCTCAGATTCATGGGCTTGGCGT 462
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGGAAGGATCTCGGCACAAAGGTGACACAACTCCGCCGTCAGATTCATGGGCTTGGCGT 240
Query 463 AAGTACGGCCAAAAGCCCATTAAGGGATCTCCATACCCTAGAGGTTATTACCGTTGTAGT 522
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AAGTACGGCCAAAAGCCCATTAAGGGATCTCCTTACCCTAGAGGTTATTACCGTTGTAGT 300
Query 523 AGCACAAAAGGTTGTCCGGCGAGGAAGCAAGTCGAGAGAAGCAGAGATGATCCAACGATG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCACAAAAGGTTGTCCGGCGAGGAAGCAAGTCGAGAGAAGCAGAGATGATCCAACGATG 360
Query 583 ATTCTCATCACTTACACTTCTGAGCATAACCATCCTTGGCCTCTCACTTCTTCCACAAGA 642
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCTCATCACTTACACTTCTGAGCATAACCATCCTTGGCCTCTCACTTCTTCCACAAGA 420
Query 643 AACGGGCCTAAACCTAAACCCGAGCCCAAACCCGAACCTGAGCCTGAGGTAGAGCCAGAG 702
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 421 AACGGGCCTAAACCCAAACCCGAGCCCAAACCTGAACCCGAGCCTGAGGTAGAGCCAGAG 480
Query 703 GCGGAGGAGGAGGATAATAAGTTTATGGTTCTTGGAAGGGGGATTGAAACGACGCCATCA 762
|| ||||| |||||||| |||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 481 GCCGAGGAAGAGGATAACAAGTTTATGGTTCTTGGAAGGGAGATTGAAACAACGCCGTCT 540
Query 763 TGTGTCGACGAGTTCGCATGGTTTACGGAGATGGAGACAACATCTTCGACGATTCTTGAG 822
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TGCGTCGACGAGTTCGCGTGGTTTACGGAGATGGAGACAACATCTTCGACCATTCTTGAG 600
Query 823 AGCCCGATTTTCTCGTCGGAGAAAAAGACGGCTGTCTCGGGGGCTGATGACGTGGCGGTG 882
||||||||||| |||||||||||||||||||||| ||||| ||| ||||| ||||| |||
Sbjct 601 AGCCCGATTTTTTCGTCGGAGAAAAAGACGGCTGCCTCGGCGGCAGATGATGTGGCAGTG 660
Query 883 TTCTTTCCGATGGGAGAAGAGGATGAGTCTTTGTTCGCCGATCTCGGCGAGTTGCCGGAG 942
||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCTTTCCGCTGGGAGAGGAAGATGAGTCTTTGTTCGCCGATCTCGGCGAGTTGCCGGAG 720
Query 943 TGTTCTGTGGTGTTTCGTCACCGGAGTAGCGTAGTGGGGTCACAAGTTGAGATCTTTTGA 1002
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTTCGGTGGTGTTTCGTCACCGGAGTAGCGTAGTGGGGTCACAAGTTGAGATCTTTTGA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5