BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29290.1
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473139 jgi|Araly1|473139|fgenesh2_kg.1__3093__AT1G29290.1 678 0.0
> Ahg473139 jgi|Araly1|473139|fgenesh2_kg.1__3093__AT1G29290.1
Length=589
Score = 678 bits (367), Expect = 0.0
Identities = 497/556 (89%), Gaps = 24/556 (4%)
Strand=Plus/Plus
Query 64 TCTCAACCCAAAGATCAAAGCTCTTCATGGCCGTTCGTCTAATTCCGACCATCTGGCTCT 123
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 42 TCTCACCCCAAAGATCAAAGCTCTTCATGGCCGTTCGTCTAGTTCCGACCATCTGGCTCT 101
Query 124 TCATAGTCTTTGCCGTCATCGTGTCAGCCTTGCCTTCGCTGGTATCTTCAAGAAA-ACTG 182
|||||||||| ||| ||||||| ||||||||||| |||| ||| ||||||||||| | ||
Sbjct 102 TCATAGTCTTCGCCATCATCGTCTCAGCCTTGCCCTCGCCGGTTTCTTCAAGAAAGA-TG 160
Query 183 TTGGAGGTGAAGAAACAAGAAAACTTGACGGTGAGAGAGGAAGAGAAGAGTCACATGCCT 242
|||||| | ||||||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct 161 TTGGAGATCAAGAAACAAGAAATCTTGACGGTGCGAGAGGAAGATAAGAGTCACATGCCT 220
Query 243 CATGTGACCAAAACTAGTACGTTAAGTGCTCTACCAAAGGGGAAAATTCCCAACTCGACA 302
|| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 221 CACGTGACCAAAACTAGTACCTTAAGTGCTCTACCAAAGGGTAAAATTCCCAACTCAACG 280
Query 303 CCGAGCAAAAAGGGTCACGCGGCCGTCTTCGCCGGAAAGCTCCGATCACGACATCTCTCC 362
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 281 CCGAGCAAAAAGGGTCACGCCGCCGTCTTCGCCGGAAAGCTCCGATCTCGACATCTCTCC 340
Query 363 ACCGTTGATCGGTATCTCCGATCCGTTCCTAGTCCCGGTGTTGGCCATTGATAGTCTCGG 422
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 341 ACCGTTGATCGGTTTCTCCGATCCGTTCCTAGTCCCGGTGTTGGCCACTGATAGGATCCG 400
Query 423 CTAGATTCATATATATAtttt-ttt--------CTTCCATTTAGTACATTCTTT-ATTCT 472
|||||||||||| | | |||| ||| ||||||||||||||||||||| |||||
Sbjct 401 CTAGATTCATATTTCTTTTTTGTTTTTTTTTTTCTTCCATTTAGTACATTCTTTTATTCT 460
Query 473 AACTATATAATACGAAATTTCCTACAAGGTATACCTTTGTTTTTAGAATTCttt----tt 528
|| | |||||||||||||||||||||||||||||||||| ||| | || ||| ||
Sbjct 461 AA-T-TATAATACGAAATTTCCTACAAGGTATACCTTTGGCTTT-G--TT-TTTAGAATT 514
Query 529 -ttttttCAGGTTACTACAACTTTTGCATATGTAAATTAGTCAAAAGTTTATTTTCTTCC 587
||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||
Sbjct 515 ATTTTTTCAGGTTACTACAA-TTATACTTATGTAAATTAGTCAAAAGTTTATTGTCTTCC 573
Query 588 ATATCACACGAGGTTT 603
||||||| ||||||||
Sbjct 574 ATATCACCCGAGGTTT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22187537694
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5