BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29300.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473140 jgi|Araly1|473140|fgenesh2_kg.1__3094__AT1G29300.1 2495 0.0
> Ahg473140 jgi|Araly1|473140|fgenesh2_kg.1__3094__AT1G29300.1
Length=1723
Score = 2495 bits (1351), Expect = 0.0
Identities = 1581/1687 (94%), Gaps = 36/1687 (2%)
Strand=Plus/Plus
Query 1 GCTGTTTCAGACTCACCaaaaaaaCTTCTCC---TTGTCAGaaaaaaaaaaaaaaaCTAC 57
||||| ||||||||| | |||||||||||| ||||||| ||||||||||| ||
Sbjct 1 GCTGTATCAGACTCA-C--AAAAACTTCTCCTAATTGTCAG----AAAAAAAAAAA--AC 51
Query 58 TGAATCTCTCTGtttttttttCCTTTCAC--AA---C-ATCTCAATGGAGACATTGAAGA 111
||||||||||||||||||||| ||||||| || | || |||||||||||||||||||
Sbjct 52 TGAATCTCTCTGTTTTTTTTTTCTTTCACAAAATCTCAATTTCAATGGAGACATTGAAGA 111
Query 112 AGAATCCATCAGTGAGAAGAAAAAGCAAGTTAGCGAGAACATTCCAGAAAGTATGTAACC 171
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AGAATCCGTCAGTGAGAAGAAAAAGCAAGTTAGCGAGAACATTCCAGAAAGTATGTAACC 171
Query 172 TAAGAACAACGTCGACGAAGGTCTCCTCCAACAACGGAATCGGAATCTGTATGTTAAAGT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TAAGAACAACGTCGACGAAGGTCTCCTCCAACAACGGAATCGGAATCTGTATGTTAAAGT 231
Query 232 CCCAAAATCCAAATTTCGACGACGAAGACGACGACGGAGACTCTGTTTTCGATTTAAAGA 291
| || |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 232 CACAGAATCCAAATTTCAACGATGAAGACGACGACGGAGACTCTGTTTTCGATTTGAAGA 291
Query 292 GTACTTCCAGTAGCAGAAGCGGAG-AGATCAAAGTGCGAGAGCGTAATAGAGCTGTTTTA 350
||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||
Sbjct 292 GTACTTCCAGTAGCAGAAGCG-AGGAGATCAAAGTCCGAGAGCGTCGTAGAGCTGTTTTA 350
Query 351 CAAGCTGTGGTTGCGAAGATCTTCGCTAGTACGACTTCCATTAAAGCTGCTTACGCAGAG 410
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 351 GAAGCTGTGGTTGCGAAGATCTTCGCTAGTACGACCTCCATTAAAGCTGCTTACGCTGAG 410
Query 411 CTTCAGATGGCGCAACGTCCGTACGATAACGACGCTATACAAGCGGCGGATACGGCGGTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTTCAGATGGCGCAACGTCCGTACGATAACGACGCTATACAAGCGGCGGATACGGCGGTG 470
Query 471 GTCGAAGAGCTTAGAGCTTTATCGGAGCTTAAACGGAGTTTTCTCAGGAAGGAATTGAAT 530
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 471 GTCGAAGAGCTTAGAGCTTTATCGGAGCTTAAACGGAGTTTTCTTAGGAAGGAACTGAAT 530
Query 531 CTGTCTCCGCAAGTTGCGATTATGTTAGCTGAGATCCAGGAGCAACAGAGTTTGATGAGG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTGTCTCCGCAAGTTGCGATTATGTTAGCTGAGATCCAGGAGCAACAGAGTTTGATGAGG 590
Query 591 ACTTATGAAATCACGATTAAGAAACTCGAGTTTGAAGTTACGGAGAAGCAATTGAAGATC 650
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 591 ACTTACGAAATCACGATTAAGAAACTCGAGTTTGAAGTTACGGAGAAGAAATTGAAGATC 650
Query 651 GATGAATTGAAGATGAGTTTTGAAGAGAGTTTGGTTG-TGAATAAATCGTTGGAGAAGAA 709
|||||||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||
Sbjct 651 GATGAATTGAAGATGAGTCTTGATGAGAATTTGGT-GATGAATAAATCGTTGGAGAAGAA 709
Query 710 ACTCTCAGCGAGTGGATCGGTCTCTGTGTTTGATAATATTGAAATT-CGAAATTTGAATT 768
|||| |||||||||||||| | |||| ||||||||||||| ||||| |||| ||||||||
Sbjct 710 ACTCACAGCGAGTGGATCGATTTCTGCGTTTGATAATATTCAAATTTCGAA-TTTGAATT 768
Query 769 TGAGT-AGTTTTGTTCAGGTTTTAGGTTTTACGTTGAGATCTGTGAGAAGCTTCGTGAAA 827
||||| ||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 769 TGAGTCAGTTT-GTTCAGGTTTTAGGTTTTACGATGAGATCTGTTAGAAGCTTTGTGAAA 827
Query 828 TTGATTGTGAAGGAGATGGAATCAGCGAGCTGGGATCTAGACGCCGCCGCTTCCGCCGCT 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTGATTGTGAAGGAGATGGAATCAGCGAGCTGGGATCTAGACGCCGCCGCTTCCGCCGCC 887
Query 888 GTTTCGGTGAACGTTAAAAACGCTTCCACCGTTTTCGCGAGGCCGAGTCACCGTTGTTTC 947
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 888 GTTTCGGTGAACGTTAAAAACGCTTCCACCGTTTTCGCGAGACCGAGTCATCGTTGTTTC 947
Query 948 GCGTTTGAATCGTTTGTTTGTGGGAAAATGTTTGAGAATTTTGGAGCTCCTGATTTCTCG 1007
||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 948 GCGTTTGAATCGTTTGTTTGTGGGAAAATGTTTGAGAGTTTCGAATCTCCTGATTTCTCG 1007
Query 1008 AGACGTGAGGAATTCGAAAA-GTTGAGATCCGTTGACCCGATTCAGTACTTGACCCGGAA 1066
|| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGTCGTGAGGAATTTGAAAACGT-GAGATCCGTTGACCCGATTCAGTACTTGACCCGGAA 1066
Query 1067 CCCGGGTTCGTCTTTTGCCAGGTTCGTGGTTCATAAGTACTTGAGCGTTGTACATGCGAA 1126
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1067 CCCGGGTTCGTCTTTTGCGAGTTTCGTGGTTCATAAGTACTTGAGCGTTGTACACGCGAA 1126
Query 1127 GATGGAGTGTTCTTTCTTCGGGAACTTGAACCAGAGGAAGCTGGTTAACTCGGGTGGGTT 1186
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1127 GATGGAGTGTTCTTTCTTCGGGAACTTGAACCAGAGGAAACTGGTTAACTCGGGTGGGTT 1186
Query 1187 TCCGGACTCGGGTTTCTTCGCGACGTTTTGTGAAATGGCAAAACGGATCTGGCTT-TTAC 1245
|||| | |||||||| ||||| ||||||||||||||||| ||||||||||||||| || |
Sbjct 1187 TCCGAATTCGGGTTTTTTCGCAACGTTTTGTGAAATGGCTAAACGGATCTGGCTTCTT-C 1245
Query 1246 ACTGCTTAGCGTTTTCATTAAGCGGAAACGTCACGGTGTTTCAGCTCAAACGAGGTTGTA 1305
|||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 1246 ACTGCTTAGCGTTTTCTTTAAGTGAAAACGTCACGGTGTTTCAGCTCAAAAGAGGTTGTA 1305
Query 1306 GATTCTCTCAAGTATATATGGAGAGTGTGAAATCCGGCGATGAGTCATTATTCTCCGGTG 1365
||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| |
Sbjct 1306 GATTCTCTCAAGTGTATATGGAGAGTGTGAAATCAGGCGATGAGTCAATCTTCTCCGGCG 1365
Query 1366 ATAATTCAGATATTCGGGTCGGGTTCACGGTTGTTCCCGGGTTTAAAATCGGCGAGAATG 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1366 ATAATTCAGATATTCGGGTCGGGTTCACGGTTGTTCCCGGGTTTAAAATCGGTGAAAATG 1425
Query 1426 TGATACAAAGCCAGGTTTACTTGACTCCGGTTAACGGTTTTACTTCATGAATAGGCCAA- 1484
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1426 TGATACAAAGCCAGGTTTACTTGTCTCCGGTTAACGGTTTTACTTCATGAATAG-CCAAA 1484
Query 1485 TCCAAAG-AGAACGCGGTGGGTTGTGTTCACGCGCCGGGGAAGAAAAAAGAGAGGCGGCG 1543
|| |||| | |||||||||| ||||||||||||||||||||| || ||| ||||| ||||
Sbjct 1485 TCAAAAGGAAAACGCGGTGG-TTGTGTTCACGCGCCGGGGAA-AATAAA-AGAGGTGGCG 1541
Query 1544 CGTGAAAAGGAAATGGTGGGGACATGATTCCTTGGGGGCAGCAAGACTGGCAAGTGGGAC 1603
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1542 CGTGGAAAGGAAATGGTGGGGACATGATTCCTTGGGGGCAGCAAGACTGGCAAGTGGGTC 1601
Query 1604 ATGTTTTAAGAATGTGACGGAGACAGAAAATGGCGCGAGGGACAATCATTATGAAAAAAC 1663
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1602 ATGTTTTGAGAATGTGACGGAGACAGAAAATGGCGCGAGGGACAATCATCATGAGAAAAT 1661
Query 1664 AGTTTAG 1670
|||||||
Sbjct 1662 AGTTTAG 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5