BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G29300.1 Length=1815 Score E Sequences producing significant alignments: (Bits) Value Ahg473140 jgi|Araly1|473140|fgenesh2_kg.1__3094__AT1G29300.1 2495 0.0 > Ahg473140 jgi|Araly1|473140|fgenesh2_kg.1__3094__AT1G29300.1 Length=1723 Score = 2495 bits (1351), Expect = 0.0 Identities = 1581/1687 (94%), Gaps = 36/1687 (2%) Strand=Plus/Plus Query 1 GCTGTTTCAGACTCACCaaaaaaaCTTCTCC---TTGTCAGaaaaaaaaaaaaaaaCTAC 57 ||||| ||||||||| | |||||||||||| ||||||| ||||||||||| || Sbjct 1 GCTGTATCAGACTCA-C--AAAAACTTCTCCTAATTGTCAG----AAAAAAAAAAA--AC 51 Query 58 TGAATCTCTCTGtttttttttCCTTTCAC--AA---C-ATCTCAATGGAGACATTGAAGA 111 ||||||||||||||||||||| ||||||| || | || ||||||||||||||||||| Sbjct 52 TGAATCTCTCTGTTTTTTTTTTCTTTCACAAAATCTCAATTTCAATGGAGACATTGAAGA 111 Query 112 AGAATCCATCAGTGAGAAGAAAAAGCAAGTTAGCGAGAACATTCCAGAAAGTATGTAACC 171 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 AGAATCCGTCAGTGAGAAGAAAAAGCAAGTTAGCGAGAACATTCCAGAAAGTATGTAACC 171 Query 172 TAAGAACAACGTCGACGAAGGTCTCCTCCAACAACGGAATCGGAATCTGTATGTTAAAGT 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TAAGAACAACGTCGACGAAGGTCTCCTCCAACAACGGAATCGGAATCTGTATGTTAAAGT 231 Query 232 CCCAAAATCCAAATTTCGACGACGAAGACGACGACGGAGACTCTGTTTTCGATTTAAAGA 291 | || |||||||||||| |||| |||||||||||||||||||||||||||||||| |||| Sbjct 232 CACAGAATCCAAATTTCAACGATGAAGACGACGACGGAGACTCTGTTTTCGATTTGAAGA 291 Query 292 GTACTTCCAGTAGCAGAAGCGGAG-AGATCAAAGTGCGAGAGCGTAATAGAGCTGTTTTA 350 ||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||| Sbjct 292 GTACTTCCAGTAGCAGAAGCG-AGGAGATCAAAGTCCGAGAGCGTCGTAGAGCTGTTTTA 350 Query 351 CAAGCTGTGGTTGCGAAGATCTTCGCTAGTACGACTTCCATTAAAGCTGCTTACGCAGAG 410 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 351 GAAGCTGTGGTTGCGAAGATCTTCGCTAGTACGACCTCCATTAAAGCTGCTTACGCTGAG 410 Query 411 CTTCAGATGGCGCAACGTCCGTACGATAACGACGCTATACAAGCGGCGGATACGGCGGTG 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 CTTCAGATGGCGCAACGTCCGTACGATAACGACGCTATACAAGCGGCGGATACGGCGGTG 470 Query 471 GTCGAAGAGCTTAGAGCTTTATCGGAGCTTAAACGGAGTTTTCTCAGGAAGGAATTGAAT 530 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 471 GTCGAAGAGCTTAGAGCTTTATCGGAGCTTAAACGGAGTTTTCTTAGGAAGGAACTGAAT 530 Query 531 CTGTCTCCGCAAGTTGCGATTATGTTAGCTGAGATCCAGGAGCAACAGAGTTTGATGAGG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 CTGTCTCCGCAAGTTGCGATTATGTTAGCTGAGATCCAGGAGCAACAGAGTTTGATGAGG 590 Query 591 ACTTATGAAATCACGATTAAGAAACTCGAGTTTGAAGTTACGGAGAAGCAATTGAAGATC 650 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 591 ACTTACGAAATCACGATTAAGAAACTCGAGTTTGAAGTTACGGAGAAGAAATTGAAGATC 650 Query 651 GATGAATTGAAGATGAGTTTTGAAGAGAGTTTGGTTG-TGAATAAATCGTTGGAGAAGAA 709 |||||||||||||||||| |||| |||| |||||| | |||||||||||||||||||||| Sbjct 651 GATGAATTGAAGATGAGTCTTGATGAGAATTTGGT-GATGAATAAATCGTTGGAGAAGAA 709 Query 710 ACTCTCAGCGAGTGGATCGGTCTCTGTGTTTGATAATATTGAAATT-CGAAATTTGAATT 768 |||| |||||||||||||| | |||| ||||||||||||| ||||| |||| |||||||| Sbjct 710 ACTCACAGCGAGTGGATCGATTTCTGCGTTTGATAATATTCAAATTTCGAA-TTTGAATT 768 Query 769 TGAGT-AGTTTTGTTCAGGTTTTAGGTTTTACGTTGAGATCTGTGAGAAGCTTCGTGAAA 827 ||||| ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 769 TGAGTCAGTTT-GTTCAGGTTTTAGGTTTTACGATGAGATCTGTTAGAAGCTTTGTGAAA 827 Query 828 TTGATTGTGAAGGAGATGGAATCAGCGAGCTGGGATCTAGACGCCGCCGCTTCCGCCGCT 887 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 TTGATTGTGAAGGAGATGGAATCAGCGAGCTGGGATCTAGACGCCGCCGCTTCCGCCGCC 887 Query 888 GTTTCGGTGAACGTTAAAAACGCTTCCACCGTTTTCGCGAGGCCGAGTCACCGTTGTTTC 947 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 888 GTTTCGGTGAACGTTAAAAACGCTTCCACCGTTTTCGCGAGACCGAGTCATCGTTGTTTC 947 Query 948 GCGTTTGAATCGTTTGTTTGTGGGAAAATGTTTGAGAATTTTGGAGCTCCTGATTTCTCG 1007 ||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||| Sbjct 948 GCGTTTGAATCGTTTGTTTGTGGGAAAATGTTTGAGAGTTTCGAATCTCCTGATTTCTCG 1007 Query 1008 AGACGTGAGGAATTCGAAAA-GTTGAGATCCGTTGACCCGATTCAGTACTTGACCCGGAA 1066 || ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1008 AGTCGTGAGGAATTTGAAAACGT-GAGATCCGTTGACCCGATTCAGTACTTGACCCGGAA 1066 Query 1067 CCCGGGTTCGTCTTTTGCCAGGTTCGTGGTTCATAAGTACTTGAGCGTTGTACATGCGAA 1126 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 1067 CCCGGGTTCGTCTTTTGCGAGTTTCGTGGTTCATAAGTACTTGAGCGTTGTACACGCGAA 1126 Query 1127 GATGGAGTGTTCTTTCTTCGGGAACTTGAACCAGAGGAAGCTGGTTAACTCGGGTGGGTT 1186 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1127 GATGGAGTGTTCTTTCTTCGGGAACTTGAACCAGAGGAAACTGGTTAACTCGGGTGGGTT 1186 Query 1187 TCCGGACTCGGGTTTCTTCGCGACGTTTTGTGAAATGGCAAAACGGATCTGGCTT-TTAC 1245 |||| | |||||||| ||||| ||||||||||||||||| ||||||||||||||| || | Sbjct 1187 TCCGAATTCGGGTTTTTTCGCAACGTTTTGTGAAATGGCTAAACGGATCTGGCTTCTT-C 1245 Query 1246 ACTGCTTAGCGTTTTCATTAAGCGGAAACGTCACGGTGTTTCAGCTCAAACGAGGTTGTA 1305 |||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||| Sbjct 1246 ACTGCTTAGCGTTTTCTTTAAGTGAAAACGTCACGGTGTTTCAGCTCAAAAGAGGTTGTA 1305 Query 1306 GATTCTCTCAAGTATATATGGAGAGTGTGAAATCCGGCGATGAGTCATTATTCTCCGGTG 1365 ||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| | Sbjct 1306 GATTCTCTCAAGTGTATATGGAGAGTGTGAAATCAGGCGATGAGTCAATCTTCTCCGGCG 1365 Query 1366 ATAATTCAGATATTCGGGTCGGGTTCACGGTTGTTCCCGGGTTTAAAATCGGCGAGAATG 1425 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1366 ATAATTCAGATATTCGGGTCGGGTTCACGGTTGTTCCCGGGTTTAAAATCGGTGAAAATG 1425 Query 1426 TGATACAAAGCCAGGTTTACTTGACTCCGGTTAACGGTTTTACTTCATGAATAGGCCAA- 1484 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 1426 TGATACAAAGCCAGGTTTACTTGTCTCCGGTTAACGGTTTTACTTCATGAATAG-CCAAA 1484 Query 1485 TCCAAAG-AGAACGCGGTGGGTTGTGTTCACGCGCCGGGGAAGAAAAAAGAGAGGCGGCG 1543 || |||| | |||||||||| ||||||||||||||||||||| || ||| ||||| |||| Sbjct 1485 TCAAAAGGAAAACGCGGTGG-TTGTGTTCACGCGCCGGGGAA-AATAAA-AGAGGTGGCG 1541 Query 1544 CGTGAAAAGGAAATGGTGGGGACATGATTCCTTGGGGGCAGCAAGACTGGCAAGTGGGAC 1603 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1542 CGTGGAAAGGAAATGGTGGGGACATGATTCCTTGGGGGCAGCAAGACTGGCAAGTGGGTC 1601 Query 1604 ATGTTTTAAGAATGTGACGGAGACAGAAAATGGCGCGAGGGACAATCATTATGAAAAAAC 1663 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1602 ATGTTTTGAGAATGTGACGGAGACAGAAAATGGCGCGAGGGACAATCATCATGAGAAAAT 1661 Query 1664 AGTTTAG 1670 ||||||| Sbjct 1662 AGTTTAG 1668 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68143448305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5