BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G29310.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473141 jgi|Araly1|473141|fgenesh2_kg.1__3095__AT1G29310.1 2734 0.0
Ahg482367 jgi|Araly1|482367|fgenesh2_kg.4__1427__AT2G34250.1 1738 0.0
> Ahg473141 jgi|Araly1|473141|fgenesh2_kg.1__3095__AT1G29310.1
Length=1680
Score = 2734 bits (1480), Expect = 0.0
Identities = 1616/1682 (96%), Gaps = 7/1682 (0%)
Strand=Plus/Plus
Query 24 aaaaaaaacaaaaaaaaaaCTTTGAATCCGTTTGTTG-CTTCTTCG-CAACGTTCTCTCT 81
|||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 1 AAAAAAAAAAAAAAAAAAACTTTGAATCCGTTTGTTGTCTTCTTCGTC-ACGTTCTCTCT 59
Query 82 CAAACTCGCAGAGTAACAGATTCGATAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTG 141
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAAACTCGCTGAGAAACAGATTCGATAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTT 119
Query 142 AGGCCATTCTTGGCTTTTCTTCCAGAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGA 201
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 120 AGGCCATTCTTGGCTTTTCTTCCAGAAGTTCAAAGTGCTGATAGGAAGATTCCATTTAGA 179
Query 202 GAGAAAGTGATCTACACTGTCATCTCCCTCTTCATTTTCCTTGTTTGTAGTCAGCTTCCT 261
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 180 GAGAAAGTGATCTACACTGTCATTTCTCTCTTCATTTTCCTTGTCTGTAGTCAGCTTCCT 239
Query 262 CTCTATGGGATCCATTCTACCACCGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTC 321
|| |||||||| ||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct 240 CTATATGGGATTCATTCCACGACTGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTC 299
Query 322 GCATCGAATCGTGGAACGGTGATGGAGCTTGGTATTACTCCTATTGTCACATCTGGA-TT 380
|| ||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||
Sbjct 300 GCTTCGAACCGTGGGACGGTGATGGAGCTCGGTATTACTCCTATTGTTACGTCTGGACTT 359
Query 381 AGTGATGCAACTCTTAGCAGGGTCAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGA 440
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 360 -GTGATGCAACTCTTAGCAGGTTCAAAGATTATTGAGGTTGACAACAATGTCCGTGAGGA 418
Query 441 TCGTGCTCTCTTGAATGGTGCTCAGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCGTGCTCTCTTGAATGGTGCTCAGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGC 478
Query 501 TGTTGCATATGTTCTTTCGGGAATGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGC 560
|||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 479 TGTTGCGTATGTTCTTTCGGGAATGTACGGTCCTGTTGGTCAGCTCGGTGTTGGAAATGC 538
Query 561 TATTCTGATCATCCTCCAGCTTTTCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCT 620
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 539 TATTCTGATCATCCTCCAGCTTTTCTTTGCCGGAATTATCGTTATCTGTCTTGACGAGCT 598
Query 621 TCTTCAGAAGGGATATGGTCTTGGCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTG 680
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 599 TCTTCAGAAGGGATATGGTCTTGGCTCTGGGATCTCTCTATTCATAGCAACTAATATCTG 658
Query 681 TGAAAGCATTATCTGGAAAGCATTTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGA 740
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 659 TGAAAGCATTATCTGGAAAGCATTTAGCCCCACAACAATCAACACCGGTCGTGGAGCTGA 718
Query 741 GTTTGAAGGCGCTGTGATTGCGTTGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGC 800
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTTGAAGGCGCTGTGATCGCGTTGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGC 778
Query 801 TGCGCTCAGACAAGCTTTTTACCGGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAAC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGCGCTCAGACAAGCTTTTTACCGGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAAC 838
Query 861 AGTGTTGATCTTCTTGATTGTTATATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAG 920
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 AGTCTTGATCTTCTTGATTGTTATCTACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAG 898
Query 921 GTCAAAGAGTGCTCGTGGCCAACAGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAA 980
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 GTCAAAGAGTGCTCGTGGCCAACAGGGTTCTTACCCGATCAAGCTGTTCTACACCTCCAA 958
Query 981 CATGCCAATCATTCTCCAGTCTGCTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCT 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATGCCAATCATTCTCCAGTCTGCTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCT 1018
Query 1041 CTACAGGAAATTCAGTGGAAATTTCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGA 1100
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 CTACAGGAAGTTCAGTGGAAATTTCTTTGTAAACCTATTGGGACAGTGGAAAGAATCAGA 1078
Query 1101 GTACAGTGGACAATCTATACCAGTTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAG 1160
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1079 GTACAGTGGACAATCTATACCAGTTAGTGGTCTTGCATACTTAATCACAGCTCCGGCAAG 1138
Query 1161 TTTTGCCGATATGGCAGCTCATCCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCAC 1220
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 TTTTGCCGATATGGCAGCTCATCCATTCCATGCGCTGTTCTATATCGTCTTCATGCTCAC 1198
Query 1221 TGCTTGTGCCCTATTCTCAAAAACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGT 1280
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1199 TGCTTGCGCCCTATTCTCAAAGACCTGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGT 1258
Query 1281 AGCTAAGCAGCTAAAGGAACAACAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACA 1340
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1259 AGCTAAGCAGCTCAAGGAACAACAAATGGTGATGCCGGGACACAGAGAGTCTAACTTACA 1318
Query 1341 AAAGGAGCTGAACCGGTACATCCCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGC 1400
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1319 GAAGGAGCTGAACCGGTACATCCCAACAGCAGCTGCATTTGGAGGAGTGTGCATTGGTGC 1378
Query 1401 GCTCACTGTTTTGGCTGATTTCATGGGAGCCATTGGGTCGGGGACTGGAATCTTACTTGC 1460
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1379 GCTCACTGTTTTGGCTGATTTCATGGGAGCAATTGGGTCAGGGACTGGAATCTTACTTGC 1438
Query 1461 AGTCACAATCATATATCAGTATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGG 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGTCACAATCATATATCAGTATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGG 1498
Query 1521 TTTCTTTGGATTCTGATTGTTTCTAGTCATATAAAGGGGTAAATTTT-GCTAAGACTAGT 1579
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1499 CTTCTTTGGATTCTGATTGTTTCTAGTCATATAAAGAGGTAAATTTTTGCTAAGACTAGT 1558
Query 1580 GAGAAATTTGAAAGCCTAATTAAGAAGTAGCTTTCCTCTTATGTGTTCATTCAAAGGTTC 1639
||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||
Sbjct 1559 GAGAAATTTGAAAGCCTAATTAAGAAGTAGCTTTCATCTTCTGTGTTCACTCGAAGGTTC 1618
Query 1640 AATAGACGATTAAAA-GAGCATTTTGGTAGACACTTTTTGATTAACCAACAGATTTTTCT 1698
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AATAGACGATTAAAAAGAGCATTTTGGTAGACACTTTTTGATTAACCAACAGATTTTTCT 1678
Query 1699 CT 1700
||
Sbjct 1679 CT 1680
> Ahg482367 jgi|Araly1|482367|fgenesh2_kg.4__1427__AT2G34250.1
Length=1897
Score = 1738 bits (941), Expect = 0.0
Identities = 1272/1434 (89%), Gaps = 14/1434 (1%)
Strand=Plus/Plus
Query 108 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTC-TTGGCTTTTCTT-CCA 165
||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || ||
Sbjct 181 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTTG-CGTTT-TTGCCT 238
Query 166 GAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATC 225
|| || || ||||||||||||||| | ||||| |||||||| || |||||||||||||||
Sbjct 239 GAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGTCATC 298
Query 226 TCCCTCTTCAT-TTTCCTTGTTTGTAGTCAGCTTCCTCTCTATGGGATCCATTCTACCAC 284
|| |||||||| |||| |||| || |||||||||||||| ||||| |||||||| || ||
Sbjct 299 TCTCTCTTCATCTTTC-TTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACGAC 357
Query 285 CGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTCGCATCGAATCGTGGAACGGTGAT 344
||||||||||| ||||||||||||||||||||||| || || || |||||||| || ||
Sbjct 358 TGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCAT 417
Query 345 GGAGCTTGGTATTACTCCTATTGTCACATCTGGA-TTAGTGATGCAACTCTTAGCAGGGT 403
|||||||||||||||||||||||||||||||||| || |||||||||||||| || || |
Sbjct 418 GGAGCTTGGTATTACTCCTATTGTCACATCTGGACTT-GTGATGCAACTCTTGGCTGGTT 476
Query 404 CAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCTCTCTTGAATGGTGCTC 463
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 477 CCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGCTC 536
Query 464 AGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCATATGTTCTTTCGGGAA 523
|||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 537 AGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAA 596
Query 524 TGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTT 583
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 TGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCTTT 656
Query 584 TCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTG 643
|||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 657 TCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCTCG 716
Query 644 GCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTGTGAAAGCATTATCTGGAAAGCAT 703
| || |||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||
Sbjct 717 GATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGCAT 776
Query 704 TTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATTGCGT 763
||||||| || || ||||||||||| |||||||||||||||||||| || || |||||
Sbjct 777 TTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGCAC 836
Query 764 TGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACC 823
||||||||||||||||||| |||||||| |||||||| || ||| | |||||||| ||||
Sbjct 837 TGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACC 896
Query 824 GGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTGTTGATCTTCTTGATTGTTA 883
|||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |
Sbjct 897 GGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGA 956
Query 884 TATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAAC 943
| ||||||||||| |||||||| || ||||| ||||| ||||||| ||| ||||| ||||
Sbjct 957 TCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAAC 1016
Query 944 AGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTG 1003
||||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||||| || |
Sbjct 1017 AGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATCCG 1076
Query 1004 CTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAATTCAGTGGAAATT 1063
|||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1077 CTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAATT 1136
Query 1064 TCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAG 1123
||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 1137 TCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCCAG 1196
Query 1124 TTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAGTTT-TGCCGATATGGCAGCTCAT 1182
|||||||||| || || | ||||||||||| ||||| || | | || |||||||||||
Sbjct 1197 TTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCT-CTGACATGGCAGCTCAC 1255
Query 1183 CCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCACTGCTTGTGCCCTATTCTCAAAA 1242
|| |||||||| |||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 1256 CCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAG 1315
Query 1243 ACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTAAAGGAACAA 1302
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 ACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAA 1375
Query 1303 CAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACAAAAGGAGCTGAACCGGTACATC 1362
|||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||| |||
Sbjct 1376 CAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATATC 1435
Query 1363 CCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGCGCTCACTGTTTTGGCTGATTTC 1422
|||||||| || || |||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct 1436 CCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTTC 1495
Query 1423 ATGGGAGCCATTGGGTCGGGGACTGGAAT-CTTACTTG-CAGTCACAATCATATATCAGT 1480
||||||||||| |||||||| || ||||| || ||| | ||||| |||||||| ||||
Sbjct 1496 ATGGGAGCCATCGGGTCGGGAACCGGAATTCTG--TTGGCGGTCACGATCATATACCAGT 1553
Query 1481 ATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGTTTCTTTGGATTCT 1534
|||| || ||||||||||||||||||||||| ||||| || ||||| || ||||
Sbjct 1554 ATTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5